MS014679 (gene) Bitter gourd (TR) v1

Overview
NameMS014679
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionlate embryogenesis abundant protein 18
Locationscaffold1315: 208028 .. 208309 (-)
RNA-Seq ExpressionMS014679
SyntenyMS014679
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGAAATGTATGCAGGTCAAGAAATCCACGGCGAAAACGGCGGAGGAGAAGAGGATTGTGAAGGAGAGGAGGAAGGCGAGGGAGGCGGAGGCGAAGCGGGAGCTGCACGAGGCGAAAGCCAGGCATGCAGCTCAAAAGCTAAGCAGTAGGAAGCATTCCCACGTACATGGTGGCCATGCACCACTGCCGGTGGAGGGCGGCGCCGCCACTCATCTCGCCGGAGCAAATGTTCCTGCTTATCCTTTACCCAGCCAGGGCTACCGTCCGGCGGGGCACAAATTT

mRNA sequence

CTGAAATGTATGCAGGTCAAGAAATCCACGGCGAAAACGGCGGAGGAGAAGAGGATTGTGAAGGAGAGGAGGAAGGCGAGGGAGGCGGAGGCGAAGCGGGAGCTGCACGAGGCGAAAGCCAGGCATGCAGCTCAAAAGCTAAGCAGTAGGAAGCATTCCCACGTACATGGTGGCCATGCACCACTGCCGGTGGAGGGCGGCGCCGCCACTCATCTCGCCGGAGCAAATGTTCCTGCTTATCCTTTACCCAGCCAGGGCTACCGTCCGGCGGGGCACAAATTT

Coding sequence (CDS)

CTGAAATGTATGCAGGTCAAGAAATCCACGGCGAAAACGGCGGAGGAGAAGAGGATTGTGAAGGAGAGGAGGAAGGCGAGGGAGGCGGAGGCGAAGCGGGAGCTGCACGAGGCGAAAGCCAGGCATGCAGCTCAAAAGCTAAGCAGTAGGAAGCATTCCCACGTACATGGTGGCCATGCACCACTGCCGGTGGAGGGCGGCGCCGCCACTCATCTCGCCGGAGCAAATGTTCCTGCTTATCCTTTACCCAGCCAGGGCTACCGTCCGGCGGGGCACAAATTT

Protein sequence

LKCMQVKKSTAKTAEEKRIVKERRKAREAEAKRELHEAKARHAAQKLSSRKHSHVHGGHAPLPVEGGAATHLAGANVPAYPLPSQGYRPAGHKF
Homology
BLAST of MS014679 vs. NCBI nr
Match: XP_022145338.1 (late embryogenesis abundant protein 18 [Momordica charantia])

HSP 1 Score: 166.4 bits (420), Expect = 1.2e-37
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 0

Query: 5   QVKKSTAKTAEEKRIVKERRKAREAEAKRELHEAKARHAAQKLSSRKHSHVHGGHAPLPV 64
           +VKKSTAKTAEEKRIVKERRKAREAEAKRELHEAKARHAAQKLSSRKHSHVHGGHAPLPV
Sbjct: 29  KVKKSTAKTAEEKRIVKERRKAREAEAKRELHEAKARHAAQKLSSRKHSHVHGGHAPLPV 88

Query: 65  EGGAATHLAGANVPAYPLPSQGYRPAGHKF 95
           EGGAATHLAGANVPAYPLPSQGYRPAGHKF
Sbjct: 89  EGGAATHLAGANVPAYPLPSQGYRPAGHKF 118

BLAST of MS014679 vs. NCBI nr
Match: XP_004148757.1 (late embryogenesis abundant protein 6 [Cucumis sativus] >KAE8650031.1 hypothetical protein Csa_009894 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 6.8e-17
Identity = 64/93 (68.82%), Postives = 76/93 (81.72%), Query Frame = 0

Query: 5   QVKKSTAKTAEEKRIVKERRKAREAEAKRELHEAKARHAAQKLSSRKHSHVHGGHA--PL 64
           +V+K++ KTAEE++I++ERRKA  AEAKRELHEAKARHAAQKL +RK SHV GGH     
Sbjct: 29  KVEKASVKTAEERKIIEERRKAATAEAKRELHEAKARHAAQKLRNRK-SHVLGGHRHHQS 88

Query: 65  PVEGGAATHLAGA-NVPAYPLPS-QGYRPAGHK 94
           P+EGGAATHL GA NVPAYP+ S +GY P GHK
Sbjct: 89  PMEGGAATHLGGATNVPAYPITSPEGYHP-GHK 119

BLAST of MS014679 vs. NCBI nr
Match: XP_008448704.1 (PREDICTED: uncharacterized protein LOC103490795 [Cucumis melo] >KAA0053052.1 seed maturation protein [Cucumis melo var. makuwa] >TYK11507.1 seed maturation protein [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 2.6e-16
Identity = 65/94 (69.15%), Postives = 75/94 (79.79%), Query Frame = 0

Query: 5   QVKKSTAKTAEEKRIVKERRKAREAEAKRELHEAKARHAAQKLSSRKHSHVHGG---HAP 64
           +V+K++ KTAEE++IV+ERRKA  AEAKRELHEAKARHAAQKL +RK SHV GG   H  
Sbjct: 29  KVEKASVKTAEERKIVEERRKAATAEAKRELHEAKARHAAQKLRNRK-SHVLGGGHLHHH 88

Query: 65  LPVEGGAATHLAG-ANVPAYPLPS-QGYRPAGHK 94
            PVEGGAATHL G  NVPAYP+ S +GY P GHK
Sbjct: 89  SPVEGGAATHLGGETNVPAYPIASPEGYYP-GHK 120

BLAST of MS014679 vs. NCBI nr
Match: XP_038906206.1 (late embryogenesis abundant protein 6-like [Benincasa hispida])

HSP 1 Score: 87.4 bits (215), Expect = 7.0e-14
Identity = 60/93 (64.52%), Postives = 73/93 (78.49%), Query Frame = 0

Query: 5   QVKKSTAKTAEEKRIVKERRKAREAEAKRELHEAKARHAAQKLSSRKHSHVHGGHA--PL 64
           +V+K++ KT EE++I +ERRKA  AEAKRELHEAKARHAAQKL S+K SHV GGH     
Sbjct: 29  KVEKASVKTREERKIAEERRKAATAEAKRELHEAKARHAAQKLRSKK-SHVLGGHLHHHP 88

Query: 65  PVEGGAATHLAGANVP-AYPLP-SQGYRPAGHK 94
           P+EG AAT+L  ANVP AYP+P ++GY P GHK
Sbjct: 89  PMEGAAATNLGAANVPAAYPIPTTEGYYP-GHK 119

BLAST of MS014679 vs. NCBI nr
Match: XP_022923387.1 (late embryogenesis abundant protein 6-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 82.8 bits (203), Expect = 1.7e-12
Identity = 59/92 (64.13%), Postives = 72/92 (78.26%), Query Frame = 0

Query: 5   QVKKSTAKTAEEKRIVKERRKAREAEAKRELHEAKARHAAQKLSSRKHSHV--HGGHAPL 64
           +V+K++AKTAEE++I +ERRKA EAEAKRELHEAKARHAAQKL +R+ SHV  H  H   
Sbjct: 25  KVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQ-SHVVGHRLHHQP 84

Query: 65  PVEGGAATHLAGANVPAYPLPS-QGYRPAGHK 94
           PVEGG+A     ANVPAYP+ S +GY P GH+
Sbjct: 85  PVEGGSA-----ANVPAYPIASPEGYYP-GHR 109

BLAST of MS014679 vs. ExPASy Swiss-Prot
Match: Q39138 (Late embryogenesis abundant protein 6 OS=Arabidopsis thaliana OX=3702 GN=LEA6 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 6.9e-04
Identity = 38/93 (40.86%), Postives = 52/93 (55.91%), Query Frame = 0

Query: 5   QVKKSTAKTAEEKRIVKERRKAREAEAKRELHEAKARHAAQKLSSRK-HSHV--HGGH-- 64
           + +++ A+T EEK I  +RRKA+EAEA  ++H AKA HA  KL +++ H HV  HG H  
Sbjct: 29  KAERAMARTKEEKEIAHQRRKAKEAEANMDMHMAKAAHAEDKLMAKQSHYHVTDHGPHVP 88

Query: 65  --APLPVEGGAATHLAGAN-VPAYPLPSQGYRP 90
             AP+P       H  G N      +P Q Y P
Sbjct: 89  QQAPVPAPAPVMGHGYGHNPTGVTSVPPQTYHP 121

BLAST of MS014679 vs. ExPASy TrEMBL
Match: A0A6J1CVP3 (late embryogenesis abundant protein 18 OS=Momordica charantia OX=3673 GN=LOC111014818 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 5.8e-38
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 0

Query: 5   QVKKSTAKTAEEKRIVKERRKAREAEAKRELHEAKARHAAQKLSSRKHSHVHGGHAPLPV 64
           +VKKSTAKTAEEKRIVKERRKAREAEAKRELHEAKARHAAQKLSSRKHSHVHGGHAPLPV
Sbjct: 29  KVKKSTAKTAEEKRIVKERRKAREAEAKRELHEAKARHAAQKLSSRKHSHVHGGHAPLPV 88

Query: 65  EGGAATHLAGANVPAYPLPSQGYRPAGHKF 95
           EGGAATHLAGANVPAYPLPSQGYRPAGHKF
Sbjct: 89  EGGAATHLAGANVPAYPLPSQGYRPAGHKF 118

BLAST of MS014679 vs. ExPASy TrEMBL
Match: A0A0A0L1A9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011770 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.1e-17
Identity = 65/97 (67.01%), Postives = 78/97 (80.41%), Query Frame = 0

Query: 1  LKCMQVKKSTAKTAEEKRIVKERRKAREAEAKRELHEAKARHAAQKLSSRKHSHVHGGHA 60
          ++  QV+K++ KTAEE++I++ERRKA  AEAKRELHEAKARHAAQKL +RK SHV GGH 
Sbjct: 1  MQTTQVEKASVKTAEERKIIEERRKAATAEAKRELHEAKARHAAQKLRNRK-SHVLGGHR 60

Query: 61 --PLPVEGGAATHLAGA-NVPAYPLPS-QGYRPAGHK 94
              P+EGGAATHL GA NVPAYP+ S +GY P GHK
Sbjct: 61 HHQSPMEGGAATHLGGATNVPAYPITSPEGYHP-GHK 95

BLAST of MS014679 vs. ExPASy TrEMBL
Match: A0A5D3CHS9 (Seed maturation protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001710 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.2e-16
Identity = 65/94 (69.15%), Postives = 75/94 (79.79%), Query Frame = 0

Query: 5   QVKKSTAKTAEEKRIVKERRKAREAEAKRELHEAKARHAAQKLSSRKHSHVHGG---HAP 64
           +V+K++ KTAEE++IV+ERRKA  AEAKRELHEAKARHAAQKL +RK SHV GG   H  
Sbjct: 29  KVEKASVKTAEERKIVEERRKAATAEAKRELHEAKARHAAQKLRNRK-SHVLGGGHLHHH 88

Query: 65  LPVEGGAATHLAG-ANVPAYPLPS-QGYRPAGHK 94
            PVEGGAATHL G  NVPAYP+ S +GY P GHK
Sbjct: 89  SPVEGGAATHLGGETNVPAYPIASPEGYYP-GHK 120

BLAST of MS014679 vs. ExPASy TrEMBL
Match: A0A1S3BKB4 (uncharacterized protein LOC103490795 OS=Cucumis melo OX=3656 GN=LOC103490795 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.2e-16
Identity = 65/94 (69.15%), Postives = 75/94 (79.79%), Query Frame = 0

Query: 5   QVKKSTAKTAEEKRIVKERRKAREAEAKRELHEAKARHAAQKLSSRKHSHVHGG---HAP 64
           +V+K++ KTAEE++IV+ERRKA  AEAKRELHEAKARHAAQKL +RK SHV GG   H  
Sbjct: 29  KVEKASVKTAEERKIVEERRKAATAEAKRELHEAKARHAAQKLRNRK-SHVLGGGHLHHH 88

Query: 65  LPVEGGAATHLAG-ANVPAYPLPS-QGYRPAGHK 94
            PVEGGAATHL G  NVPAYP+ S +GY P GHK
Sbjct: 89  SPVEGGAATHLGGETNVPAYPIASPEGYYP-GHK 120

BLAST of MS014679 vs. ExPASy TrEMBL
Match: A0A6J1E5Y8 (late embryogenesis abundant protein 6-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111431099 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 8.4e-13
Identity = 59/92 (64.13%), Postives = 72/92 (78.26%), Query Frame = 0

Query: 5   QVKKSTAKTAEEKRIVKERRKAREAEAKRELHEAKARHAAQKLSSRKHSHV--HGGHAPL 64
           +V+K++AKTAEE++I +ERRKA EAEAKRELHEAKARHAAQKL +R+ SHV  H  H   
Sbjct: 25  KVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQ-SHVVGHRLHHQP 84

Query: 65  PVEGGAATHLAGANVPAYPLPS-QGYRPAGHK 94
           PVEGG+A     ANVPAYP+ S +GY P GH+
Sbjct: 85  PVEGGSA-----ANVPAYPIASPEGYYP-GHR 109

BLAST of MS014679 vs. TAIR 10
Match: AT1G32560.1 (Late embryogenesis abundant protein, group 1 protein )

HSP 1 Score: 44.7 bits (104), Expect = 4.9e-05
Identity = 38/93 (40.86%), Postives = 52/93 (55.91%), Query Frame = 0

Query: 5   QVKKSTAKTAEEKRIVKERRKAREAEAKRELHEAKARHAAQKLSSRK-HSHV--HGGH-- 64
           + +++ A+T EEK I  +RRKA+EAEA  ++H AKA HA  KL +++ H HV  HG H  
Sbjct: 29  KAERAMARTKEEKEIAHQRRKAKEAEANMDMHMAKAAHAEDKLMAKQSHYHVTDHGPHVP 88

Query: 65  --APLPVEGGAATHLAGAN-VPAYPLPSQGYRP 90
             AP+P       H  G N      +P Q Y P
Sbjct: 89  QQAPVPAPAPVMGHGYGHNPTGVTSVPPQTYHP 121

BLAST of MS014679 vs. TAIR 10
Match: AT2G35300.1 (Late embryogenesis abundant protein, group 1 protein )

HSP 1 Score: 41.6 bits (96), Expect = 4.1e-04
Identity = 30/72 (41.67%), Postives = 44/72 (61.11%), Query Frame = 0

Query: 7  KKSTAKTAEEKRIVKERRKAREAEAKRELHEAKARHAAQKLSSRKHSHVHGGHAPLPVEG 66
          +K+ A+T +EK++ +ER K++EA+AK +LH++KA HAA        + VHG H  LP   
Sbjct: 31 EKTMARTKKEKKLAQEREKSKEAQAKADLHQSKAEHAAD-------AQVHGHH--LPGHS 90

Query: 67 GAATHLAGANVP 79
             T   GAN P
Sbjct: 91 TYPTRATGANYP 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022145338.11.2e-3798.89late embryogenesis abundant protein 18 [Momordica charantia][more]
XP_004148757.16.8e-1768.82late embryogenesis abundant protein 6 [Cucumis sativus] >KAE8650031.1 hypothetic... [more]
XP_008448704.12.6e-1669.15PREDICTED: uncharacterized protein LOC103490795 [Cucumis melo] >KAA0053052.1 see... [more]
XP_038906206.17.0e-1464.52late embryogenesis abundant protein 6-like [Benincasa hispida][more]
XP_022923387.11.7e-1264.13late embryogenesis abundant protein 6-like isoform X2 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Q391386.9e-0440.86Late embryogenesis abundant protein 6 OS=Arabidopsis thaliana OX=3702 GN=LEA6 PE... [more]
Match NameE-valueIdentityDescription
A0A6J1CVP35.8e-3898.89late embryogenesis abundant protein 18 OS=Momordica charantia OX=3673 GN=LOC1110... [more]
A0A0A0L1A91.1e-1767.01Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011770 PE=3 SV=1[more]
A0A5D3CHS91.2e-1669.15Seed maturation protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3BKB41.2e-1669.15uncharacterized protein LOC103490795 OS=Cucumis melo OX=3656 GN=LOC103490795 PE=... [more]
A0A6J1E5Y88.4e-1364.13late embryogenesis abundant protein 6-like isoform X2 OS=Cucurbita moschata OX=3... [more]
Match NameE-valueIdentityDescription
AT1G32560.14.9e-0540.86Late embryogenesis abundant protein, group 1 protein [more]
AT2G35300.14.1e-0441.67Late embryogenesis abundant protein, group 1 protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 12..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..44
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..66
NoneNo IPR availablePANTHERPTHR33493:SF6LATE EMBRYOGENESIS ABUNDANT PROTEIN 6coord: 5..85
IPR005513Late embryogenesis abundant protein, LEA_1 subgroupPFAMPF03760LEA_1coord: 6..46
e-value: 2.2E-8
score: 34.6
IPR005513Late embryogenesis abundant protein, LEA_1 subgroupPANTHERPTHR33493LATE EMBRYOGENESIS ABUNDANT PROTEIN 6-RELATEDcoord: 5..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS014679.1MS014679.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009793 embryo development ending in seed dormancy