MS014626 (gene) Bitter gourd (TR) v1

Overview
NameMS014626
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description3-ketoacyl-CoA synthase
Locationscaffold1096: 146012 .. 146173 (+)
RNA-Seq ExpressionMS014626
SyntenyMS014626
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTATAGCATGGAGGGCTTCGCTAATTTGTTCAAAACTATTTATCACAAGGAAAGGCGTATTCATAACAAACTCCAATCATGCTTTTGACCACTTATGTATCCATACTAAGGGGAGAGTTCGAATTCAAGACATCGAAACAAACCTACGGTTGGAAAGAAAG

mRNA sequence

CTTATAGCATGGAGGGCTTCGCTAATTTGTTCAAAACTATTTATCACAAGGAAAGGCGTATTCATAACAAACTCCAATCATGCTTTTGACCACTTATGTATCCATACTAAGGGGAGAGTTCGAATTCAAGACATCGAAACAAACCTACGGTTGGAAAGAAAG

Coding sequence (CDS)

CTTATAGCATGGAGGGCTTCGCTAATTTGTTCAAAACTATTTATCACAAGGAAAGGCGTATTCATAACAAACTCCAATCATGCTTTTGACCACTTATGTATCCATACTAAGGGGAGAGTTCGAATTCAAGACATCGAAACAAACCTACGGTTGGAAAGAAAG

Protein sequence

LIAWRASLICSKLFITRKGVFITNSNHAFDHLCIHTKGRVRIQDIETNLRLERK
Homology
BLAST of MS014626 vs. NCBI nr
Match: XP_027905184.1 (probable 3-ketoacyl-CoA synthase 21 [Vigna unguiculata])

HSP 1 Score: 55.1 bits (131), Expect = 2.2e-04
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 0

Query: 7   SLICSKLFIT-RKGVFITNSNHAFDHLCIHTKGRVRIQDIETNLRLERK 55
           S+IC K++ T R  ++  N NHAF+H CIH+ GR  IQ +ETNLRL ++
Sbjct: 326 SIICRKMWSTGRISIYTPNFNHAFEHFCIHSGGRAIIQAVETNLRLRKQ 374

BLAST of MS014626 vs. NCBI nr
Match: QCE13276.1 (chalcone synthase [Vigna unguiculata])

HSP 1 Score: 55.1 bits (131), Expect = 2.2e-04
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 0

Query: 7   SLICSKLFIT-RKGVFITNSNHAFDHLCIHTKGRVRIQDIETNLRLERK 55
           S+IC K++ T R  ++  N NHAF+H CIH+ GR  IQ +ETNLRL ++
Sbjct: 255 SIICRKMWSTGRISIYTPNFNHAFEHFCIHSGGRAIIQAVETNLRLRKQ 303

BLAST of MS014626 vs. NCBI nr
Match: XP_020221060.1 (probable 3-ketoacyl-CoA synthase 21 [Cajanus cajan] >KYP62443.1 putative 3-ketoacyl-CoA synthase 20 [Cajanus cajan])

HSP 1 Score: 53.1 bits (126), Expect = 8.4e-04
Identity = 23/49 (46.94%), Postives = 34/49 (69.39%), Query Frame = 0

Query: 7   SLICSKLFITRK-GVFITNSNHAFDHLCIHTKGRVRIQDIETNLRLERK 55
           S++C KL+  R+  ++  N NHAF+H CIH+ GR  IQ +E NLRL ++
Sbjct: 326 SIVCRKLWSARRISIYTPNFNHAFEHFCIHSGGRAIIQAVERNLRLRKQ 374

BLAST of MS014626 vs. ExPASy TrEMBL
Match: A0A4D6NHY2 (Very-long-chain 3-oxoacyl-CoA synthase OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g269 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-04
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 0

Query: 7   SLICSKLFIT-RKGVFITNSNHAFDHLCIHTKGRVRIQDIETNLRLERK 55
           S+IC K++ T R  ++  N NHAF+H CIH+ GR  IQ +ETNLRL ++
Sbjct: 255 SIICRKMWSTGRISIYTPNFNHAFEHFCIHSGGRAIIQAVETNLRLRKQ 303

BLAST of MS014626 vs. ExPASy TrEMBL
Match: A0A151T5W8 (3-ketoacyl-CoA synthase OS=Cajanus cajan OX=3821 GN=KK1_016976 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.1e-04
Identity = 23/49 (46.94%), Postives = 34/49 (69.39%), Query Frame = 0

Query: 7   SLICSKLFITRK-GVFITNSNHAFDHLCIHTKGRVRIQDIETNLRLERK 55
           S++C KL+  R+  ++  N NHAF+H CIH+ GR  IQ +E NLRL ++
Sbjct: 326 SIVCRKLWSARRISIYTPNFNHAFEHFCIHSGGRAIIQAVERNLRLRKQ 374

BLAST of MS014626 vs. ExPASy TrEMBL
Match: A0A1S3TYX8 (3-ketoacyl-CoA synthase OS=Vigna radiata var. radiata OX=3916 GN=LOC106760038 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.3e-04
Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 0

Query: 7   SLICSKLFIT-RKGVFITNSNHAFDHLCIHTKGRVRIQDIETNLRLERK 55
           S+IC K++ T R  ++  N NHAF+H CIH+ GR  IQ +E NLRL ++
Sbjct: 326 SIICRKMWSTGRISIYTPNFNHAFEHFCIHSGGRAIIQAVERNLRLRKQ 374

BLAST of MS014626 vs. ExPASy TrEMBL
Match: A0A0L9TBI0 (3-ketoacyl-CoA synthase OS=Phaseolus angularis OX=3914 GN=LR48_Vigan468s009500 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.0e-04
Identity = 23/49 (46.94%), Postives = 34/49 (69.39%), Query Frame = 0

Query: 7   SLICSKLFIT-RKGVFITNSNHAFDHLCIHTKGRVRIQDIETNLRLERK 55
           S++C K++ T R  ++  N NHAF+H CIH+ GR  IQ +E NLRL ++
Sbjct: 326 SIVCRKMWSTGRISIYTPNFNHAFEHFCIHSGGRAIIQAVERNLRLRKQ 374

BLAST of MS014626 vs. TAIR 10
Match: AT2G16280.1 (3-ketoacyl-CoA synthase 9 )

HSP 1 Score: 42.0 bits (97), Expect = 1.8e-04
Identity = 19/47 (40.43%), Postives = 29/47 (61.70%), Query Frame = 0

Query: 7   SLICSKLFITRKGVFITNSNHAFDHLCIHTKGRVRIQDIETNLRLER 54
           +L+  KLF ++   +I +   AFDH CIH  GR  I ++E NL+L +
Sbjct: 383 TLVTKKLFNSKLKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLSQ 429

BLAST of MS014626 vs. TAIR 10
Match: AT5G49070.1 (3-ketoacyl-CoA synthase 21 )

HSP 1 Score: 40.0 bits (92), Expect = 6.9e-04
Identity = 21/47 (44.68%), Postives = 27/47 (57.45%), Query Frame = 0

Query: 8   LICSKLFITRKGVFIT-NSNHAFDHLCIHTKGRVRIQDIETNLRLER 54
           ++C KL I       T N   AF+H CIHT GR  IQ +E NL+L +
Sbjct: 328 ILCKKLKIYESNSSYTPNFKTAFEHFCIHTGGRAVIQAMEMNLKLTK 374

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_027905184.12.2e-0451.02probable 3-ketoacyl-CoA synthase 21 [Vigna unguiculata][more]
QCE13276.12.2e-0451.02chalcone synthase [Vigna unguiculata][more]
XP_020221060.18.4e-0446.94probable 3-ketoacyl-CoA synthase 21 [Cajanus cajan] >KYP62443.1 putative 3-ketoa... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A4D6NHY21.1e-0451.02Very-long-chain 3-oxoacyl-CoA synthase OS=Vigna unguiculata OX=3917 GN=DEO72_LG1... [more]
A0A151T5W84.1e-0446.943-ketoacyl-CoA synthase OS=Cajanus cajan OX=3821 GN=KK1_016976 PE=3 SV=1[more]
A0A1S3TYX85.3e-0448.983-ketoacyl-CoA synthase OS=Vigna radiata var. radiata OX=3916 GN=LOC106760038 PE... [more]
A0A0L9TBI07.0e-0446.943-ketoacyl-CoA synthase OS=Phaseolus angularis OX=3914 GN=LR48_Vigan468s009500 P... [more]
Match NameE-valueIdentityDescription
AT2G16280.11.8e-0440.433-ketoacyl-CoA synthase 9 [more]
AT5G49070.16.9e-0444.683-ketoacyl-CoA synthase 21 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS014626.1MS014626.1mRNA