MS014617 (gene) Bitter gourd (TR) v1

Overview
NameMS014617
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTOG domain-containing protein
Locationscaffold1096: 100025 .. 100168 (-)
RNA-Seq ExpressionMS014617
SyntenyMS014617
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAGCTGCTCGGAGCATTGTGATGGGAATGTTCAAGGCATTCACAGAGAATGAGGAGGAGAAACAGGAGGCCTGGCAAAGCTTTTGCCAAGCTAATCTGTCGCGGATTCATGCGCAGTCTCTGCTCAAAGTTACCTCCTCTCAG

mRNA sequence

GAAGCTGCTCGGAGCATTGTGATGGGAATGTTCAAGGCATTCACAGAGAATGAGGAGGAGAAACAGGAGGCCTGGCAAAGCTTTTGCCAAGCTAATCTGTCGCGGATTCATGCGCAGTCTCTGCTCAAAGTTACCTCCTCTCAG

Coding sequence (CDS)

GAAGCTGCTCGGAGCATTGTGATGGGAATGTTCAAGGCATTCACAGAGAATGAGGAGGAGAAACAGGAGGCCTGGCAAAGCTTTTGCCAAGCTAATCTGTCGCGGATTCATGCGCAGTCTCTGCTCAAAGTTACCTCCTCTCAG

Protein sequence

EAARSIVMGMFKAFTENEEEKQEAWQSFCQANLSRIHAQSLLKVTSSQ
Homology
BLAST of MS014617 vs. NCBI nr
Match: XP_022137956.1 (uncharacterized protein LOC111009242 [Momordica charantia])

HSP 1 Score: 89.7 bits (221), Expect = 7.2e-15
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 0

Query: 1   EAARSIVMGMFKAFTENEEEKQEAWQSFCQANLSRIHAQSLLKVTSS 48
           EAARSIVMGMFKAFTENEEEKQEAWQSFCQANLS IHAQSLLKVT+S
Sbjct: 250 EAARSIVMGMFKAFTENEEEKQEAWQSFCQANLSPIHAQSLLKVTTS 296

BLAST of MS014617 vs. NCBI nr
Match: XP_011651061.1 (uncharacterized protein LOC101204184 [Cucumis sativus] >KGN57110.1 hypothetical protein Csa_011499 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 3.0e-13
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 0

Query: 1   EAARSIVMGMFKAFTENEEEKQEAWQSFCQANLSRIHAQSLLK-VTSSQ 49
           EAARSIVMGMFKA+TENEE+KQEAWQSFCQANLS IH+QSLLK VTSSQ
Sbjct: 245 EAARSIVMGMFKAYTENEEDKQEAWQSFCQANLSPIHSQSLLKVVTSSQ 293

BLAST of MS014617 vs. NCBI nr
Match: XP_008438886.1 (PREDICTED: uncharacterized protein LOC103483845 [Cucumis melo] >KAA0049497.1 protein FAM179B [Cucumis melo var. makuwa] >TYK16177.1 protein FAM179B [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 3.0e-13
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 0

Query: 1   EAARSIVMGMFKAFTENEEEKQEAWQSFCQANLSRIHAQSLLK-VTSSQ 49
           EAARSIVMGMFKA+TENEE+KQEAWQSFCQANLS IH+QSLLK VTSSQ
Sbjct: 245 EAARSIVMGMFKAYTENEEDKQEAWQSFCQANLSPIHSQSLLKVVTSSQ 293

BLAST of MS014617 vs. NCBI nr
Match: XP_023540087.1 (TOG array regulator of axonemal microtubules protein 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 82.4 bits (202), Expect = 1.2e-12
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 0

Query: 1   EAARSIVMGMFKAFTENEEEKQEAWQSFCQANLSRIHAQSLLKVTSS 48
           EAARSIVMG+FKAFT NEEEKQEAWQSFCQ NLS I AQSLLKVTSS
Sbjct: 250 EAARSIVMGVFKAFTANEEEKQEAWQSFCQTNLSPIQAQSLLKVTSS 296

BLAST of MS014617 vs. NCBI nr
Match: XP_022979892.1 (uncharacterized protein LOC111479447 [Cucurbita maxima])

HSP 1 Score: 82.4 bits (202), Expect = 1.2e-12
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 0

Query: 1   EAARSIVMGMFKAFTENEEEKQEAWQSFCQANLSRIHAQSLLKVTSS 48
           EAAR IVMGMFKA TENEE+KQEAWQSFCQANLS IHAQSLLKV +S
Sbjct: 246 EAARCIVMGMFKALTENEEQKQEAWQSFCQANLSPIHAQSLLKVATS 292

BLAST of MS014617 vs. ExPASy TrEMBL
Match: A0A6J1C894 (uncharacterized protein LOC111009242 OS=Momordica charantia OX=3673 GN=LOC111009242 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.5e-15
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 0

Query: 1   EAARSIVMGMFKAFTENEEEKQEAWQSFCQANLSRIHAQSLLKVTSS 48
           EAARSIVMGMFKAFTENEEEKQEAWQSFCQANLS IHAQSLLKVT+S
Sbjct: 250 EAARSIVMGMFKAFTENEEEKQEAWQSFCQANLSPIHAQSLLKVTTS 296

BLAST of MS014617 vs. ExPASy TrEMBL
Match: A0A5D3CW98 (Protein FAM179B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001050 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.5e-13
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 0

Query: 1   EAARSIVMGMFKAFTENEEEKQEAWQSFCQANLSRIHAQSLLK-VTSSQ 49
           EAARSIVMGMFKA+TENEE+KQEAWQSFCQANLS IH+QSLLK VTSSQ
Sbjct: 245 EAARSIVMGMFKAYTENEEDKQEAWQSFCQANLSPIHSQSLLKVVTSSQ 293

BLAST of MS014617 vs. ExPASy TrEMBL
Match: A0A0A0L588 (TOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G154330 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.5e-13
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 0

Query: 1   EAARSIVMGMFKAFTENEEEKQEAWQSFCQANLSRIHAQSLLK-VTSSQ 49
           EAARSIVMGMFKA+TENEE+KQEAWQSFCQANLS IH+QSLLK VTSSQ
Sbjct: 245 EAARSIVMGMFKAYTENEEDKQEAWQSFCQANLSPIHSQSLLKVVTSSQ 293

BLAST of MS014617 vs. ExPASy TrEMBL
Match: A0A1S3AX30 (uncharacterized protein LOC103483845 OS=Cucumis melo OX=3656 GN=LOC103483845 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.5e-13
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 0

Query: 1   EAARSIVMGMFKAFTENEEEKQEAWQSFCQANLSRIHAQSLLK-VTSSQ 49
           EAARSIVMGMFKA+TENEE+KQEAWQSFCQANLS IH+QSLLK VTSSQ
Sbjct: 245 EAARSIVMGMFKAYTENEEDKQEAWQSFCQANLSPIHSQSLLKVVTSSQ 293

BLAST of MS014617 vs. ExPASy TrEMBL
Match: A0A6J1IF80 (uncharacterized protein LOC111472248 OS=Cucurbita maxima OX=3661 GN=LOC111472248 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.6e-13
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 0

Query: 1   EAARSIVMGMFKAFTENEEEKQEAWQSFCQANLSRIHAQSLLKVTSS 48
           EAARSIVMG+FKAFT NEEEKQEAWQSFCQ NLS I AQSLLKVTSS
Sbjct: 250 EAARSIVMGVFKAFTANEEEKQEAWQSFCQTNLSPIQAQSLLKVTSS 296

BLAST of MS014617 vs. TAIR 10
Match: AT4G15830.1 (ARM repeat superfamily protein )

HSP 1 Score: 54.3 bits (129), Expect = 3.1e-08
Identity = 26/53 (49.06%), Postives = 40/53 (75.47%), Query Frame = 0

Query: 1   EAARSIVMGMFKAFTENEEE-----KQEAWQSFCQANLSRIHAQSLLKVTSSQ 49
           EAARS+V  +F+ FT NEEE     KQEAW+ FC+ N++ ++AQ+++K+ +SQ
Sbjct: 244 EAARSMVNSLFEKFTWNEEEDEEGSKQEAWKKFCEKNVTGLNAQAMIKIVASQ 296

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022137956.17.2e-1595.74uncharacterized protein LOC111009242 [Momordica charantia][more]
XP_011651061.13.0e-1389.80uncharacterized protein LOC101204184 [Cucumis sativus] >KGN57110.1 hypothetical ... [more]
XP_008438886.13.0e-1389.80PREDICTED: uncharacterized protein LOC103483845 [Cucumis melo] >KAA0049497.1 pro... [more]
XP_023540087.11.2e-1289.36TOG array regulator of axonemal microtubules protein 2 [Cucurbita pepo subsp. pe... [more]
XP_022979892.11.2e-1287.23uncharacterized protein LOC111479447 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1C8943.5e-1595.74uncharacterized protein LOC111009242 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
A0A5D3CW981.5e-1389.80Protein FAM179B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G0010... [more]
A0A0A0L5881.5e-1389.80TOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G154330 PE=4 SV... [more]
A0A1S3AX301.5e-1389.80uncharacterized protein LOC103483845 OS=Cucumis melo OX=3656 GN=LOC103483845 PE=... [more]
A0A6J1IF805.6e-1389.36uncharacterized protein LOC111472248 OS=Cucurbita maxima OX=3661 GN=LOC111472248... [more]
Match NameE-valueIdentityDescription
AT4G15830.13.1e-0849.06ARM repeat superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS014617.1MS014617.1mRNA