MS014608 (gene) Bitter gourd (TR) v1

Overview


Name	MS014608
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	CAP-Gly domain-containing linker protein 1-like
Location	scaffold1096: 48789 .. 49723 (+)
RNA-Seq Expression	MS014608
Synteny	MS014608

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGGATCTCCAGAATTGGAGGTCAAAACTTGACATGCAAGTTAATACCTACCGCAGTGTAAGTTAATATATTGCTTGTTATCTTCTTCTTTTCTATGTATTCATATATTTTATATAAGGAATTGTTACTGCGCGCCGCAGTGCCATGTTTTAAGATACTTGTGTTTGAGTTTTCTTTCCTGGGTTTACATGATCCATAAACAAGTCAGAGTAGACTCGAAATTTTGATTCTTGGTGATTCAAAGAGATTTCAAGCCTGCTAATGTTTTCAACATAGGACATTTATTATTTAATCCCTTAATACCTCGGTTATTACAAAAAAAGAAGAAAAACAGAAAGATCGGATATTAATGGTAGTGTGATTTTTCCTTTTGTTGGTCATAGATATTTTCTTTATTTTCTGCTTTTGTATCTGTATATTACGGCAGCACCTGATATATTCCTTCAATGCTTCATGCAGGAACTCTCGGAACTCAAGAAATCGCTAAATGTTGAGGTAGAGAACCTTCGTACGGTAAGAAATGCTTCATAGATTGAATATGCTTTTGAACTTTTGAGTGGTATTCAAAACGGTATGAAATTTGTAGCATAAAAGCAGGAATTCGAAGAACTAAGGACTACCCTTCAGCAGCAACAAGAAGATGTGACTGCTAGCCTGAGGAACTTGGGTGTAAGTTCTAATTCTATGATTTTACTACCCGAATGTGCAGATGAATTTCCTCGAAACACCTCCAACTCACCCCTCTCCTACCGTATATATTAACCGTAACTAAAGGAAAATACAAATGTTGGCAGCTTCAGGATGTTTCCATGGACAATGACGAGACTCAACGTCAACATCCTATAGCAGAAAGCAGTGACAAGGAAGCACACGACGCAAACGAGGTTAAGGATGGACATGCCTTAACAGAGGACAAGGGGAATGAAGCTGAAAAT

mRNA sequence

CAGGATCTCCAGAATTGGAGGTCAAAACTTGACATGCAAGTTAATACCTACCGCAGTGAACTCTCGGAACTCAAGAAATCGCTAAATGTTGAGGTAGAGAACCTTCGTACGGAATTCGAAGAACTAAGGACTACCCTTCAGCAGCAACAAGAAGATGTGACTGCTAGCCTGAGGAACTTGGGTCTTCAGGATGTTTCCATGGACAATGACGAGACTCAACGTCAACATCCTATAGCAGAAAGCAGTGACAAGGAAGCACACGACGCAAACGAGGTTAAGGATGGACATGCCTTAACAGAGGACAAGGGGAATGAAGCTGAAAAT

Coding sequence (CDS)

CAGGATCTCCAGAATTGGAGGTCAAAACTTGACATGCAAGTTAATACCTACCGCAGTGAACTCTCGGAACTCAAGAAATCGCTAAATGTTGAGGTAGAGAACCTTCGTACGGAATTCGAAGAACTAAGGACTACCCTTCAGCAGCAACAAGAAGATGTGACTGCTAGCCTGAGGAACTTGGGTCTTCAGGATGTTTCCATGGACAATGACGAGACTCAACGTCAACATCCTATAGCAGAAAGCAGTGACAAGGAAGCACACGACGCAAACGAGGTTAAGGATGGACATGCCTTAACAGAGGACAAGGGGAATGAAGCTGAAAAT

Protein sequence

QDLQNWRSKLDMQVNTYRSELSELKKSLNVEVENLRTEFEELRTTLQQQQEDVTASLRNLGLQDVSMDNDETQRQHPIAESSDKEAHDANEVKDGHALTEDKGNEAEN

Homology

[Close]

BLAST of MS014608 vs. NCBI nr
Match: XP_022137849.1 (uncharacterized protein LOC111009183 [Momordica charantia])

HSP 1 Score: 201.4 bits (511), Expect = 3.8e-48
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   QDLQNWRSKLDMQVNTYRSELSELKKSLNVEVENLRTEFEELRTTLQQQQEDVTASLRNL 60
           QDLQNWRSKLDMQVNTYRSELSELKKSLNVEVENLRTEFEELRTTLQQQQEDVTASLRNL
Sbjct: 50  QDLQNWRSKLDMQVNTYRSELSELKKSLNVEVENLRTEFEELRTTLQQQQEDVTASLRNL 109

Query: 61  GLQDVSMDNDETQRQHPIAESSDKEAHDANEVKDGHALTEDKGNEAEN 109
           GLQDVSMDNDETQRQHPIAESSDKEAHDANEVKDGHALTEDKGNEAEN
Sbjct: 110 GLQDVSMDNDETQRQHPIAESSDKEAHDANEVKDGHALTEDKGNEAEN 157

[Close]

BLAST of MS014608 vs. NCBI nr
Match: XP_022948034.1 (CAP-Gly domain-containing linker protein 1-like [Cucurbita moschata] >KAG7028975.1 hypothetical protein SDJN02_10158 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151.0 bits (380), Expect = 5.9e-33
Identity = 87/109 (79.82%), Postives = 93/109 (85.32%), Query Frame = 0


Query: 1   QDLQNWRSKLDMQVNTYRSELSELKKSLNVEVENLRTEFEELRTTLQQQQEDVTASLRNL 60
           QDLQNWR KLD QVNTYRSELSELKKSLNVEVE LRTEF ELRTTLQQQQEDVT SLRNL
Sbjct: 50  QDLQNWRLKLDTQVNTYRSELSELKKSLNVEVEQLRTEFRELRTTLQQQQEDVTTSLRNL 109

Query: 61  GLQDVSMDNDETQRQHPIAESSDKEAHDANEVKDG-HALTEDKGNEAEN 109
           G+QD S DN++T+ QHP+AESSDKE  D  + KDG H LTE KGNEAEN
Sbjct: 110 GVQDDSKDNNKTRHQHPVAESSDKEDEDEGK-KDGLHGLTEGKGNEAEN 157

[Close]

BLAST of MS014608 vs. NCBI nr
Match: KAG6597517.1 (hypothetical protein SDJN03_10697, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 151.0 bits (380), Expect = 5.9e-33
Identity = 87/109 (79.82%), Postives = 93/109 (85.32%), Query Frame = 0


Query: 1   QDLQNWRSKLDMQVNTYRSELSELKKSLNVEVENLRTEFEELRTTLQQQQEDVTASLRNL 60
           QDLQNWR KLD QVNTYRSELSELKKSLNVEVE LRTEF ELRTTLQQQQEDVT SLRNL
Sbjct: 50  QDLQNWRLKLDTQVNTYRSELSELKKSLNVEVEQLRTEFRELRTTLQQQQEDVTTSLRNL 109

Query: 61  GLQDVSMDNDETQRQHPIAESSDKEAHDANEVKDG-HALTEDKGNEAEN 109
           G+QD S DN++T+ QHP+AESSDKE  D  + KDG H LTE KGNEAEN
Sbjct: 110 GVQDDSKDNNKTRHQHPVAESSDKEDEDEGK-KDGLHGLTEGKGNEAEN 157

[Close]

BLAST of MS014608 vs. NCBI nr
Match: XP_023539906.1 (CAP-Gly domain-containing linker protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 148.7 bits (374), Expect = 3.0e-32
Identity = 86/109 (78.90%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 1   QDLQNWRSKLDMQVNTYRSELSELKKSLNVEVENLRTEFEELRTTLQQQQEDVTASLRNL 60
           QDLQNWR KLD QVNTYRSELSELKKSLNVEVE LRTEF ELRTTLQQQQEDVT SLRNL
Sbjct: 50  QDLQNWRLKLDTQVNTYRSELSELKKSLNVEVEQLRTEFRELRTTLQQQQEDVTTSLRNL 109

Query: 61  GLQDVSMDNDETQRQHPIAESSDKEAHDANEVKDG-HALTEDKGNEAEN 109
           G+QD S DN++T+ QHP+AESSDKE  D  + KDG H LTE KGNE EN
Sbjct: 110 GVQDDSKDNNKTRHQHPVAESSDKEDEDEGK-KDGLHGLTEGKGNEYEN 157

[Close]

BLAST of MS014608 vs. NCBI nr
Match: XP_004134206.1 (CAP-Gly domain-containing linker protein 1 [Cucumis sativus] >KAE8650394.1 hypothetical protein Csa_010955 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 3.0e-32
Identity = 87/108 (80.56%), Postives = 96/108 (88.89%), Query Frame = 0


Query: 1   QDLQNWRSKLDMQVNTYRSELSELKKSLNVEVENLRTEFEELRTTLQQQQEDVTASLRNL 60
           QDLQNWRSKLD QV+TYRSELSELKKSLNVEVE+LRTEF+ELRTTLQQQQEDVT SLRNL
Sbjct: 47  QDLQNWRSKLDTQVHTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNL 106

Query: 61  GLQDVSMDNDETQRQHPIAESSDKEAHDANEVKDGHALTEDKGNEAEN 109
           GLQDVS+DN+ETQ QHP+  S DKE  DA+E K  + LTE+KGNEAEN
Sbjct: 107 GLQDVSVDNNETQHQHPVG-SPDKE--DADEAKKDN-LTEEKGNEAEN 150

[Close]

BLAST of MS014608 vs. ExPASy TrEMBL
Match: A0A6J1C8F7 (uncharacterized protein LOC111009183 OS=Momordica charantia OX=3673 GN=LOC111009183 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.9e-48
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   QDLQNWRSKLDMQVNTYRSELSELKKSLNVEVENLRTEFEELRTTLQQQQEDVTASLRNL 60
           QDLQNWRSKLDMQVNTYRSELSELKKSLNVEVENLRTEFEELRTTLQQQQEDVTASLRNL
Sbjct: 50  QDLQNWRSKLDMQVNTYRSELSELKKSLNVEVENLRTEFEELRTTLQQQQEDVTASLRNL 109

Query: 61  GLQDVSMDNDETQRQHPIAESSDKEAHDANEVKDGHALTEDKGNEAEN 109
           GLQDVSMDNDETQRQHPIAESSDKEAHDANEVKDGHALTEDKGNEAEN
Sbjct: 110 GLQDVSMDNDETQRQHPIAESSDKEAHDANEVKDGHALTEDKGNEAEN 157

[Close]

BLAST of MS014608 vs. ExPASy TrEMBL
Match: A0A6J1G8M8 (CAP-Gly domain-containing linker protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111451732 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.9e-33
Identity = 87/109 (79.82%), Postives = 93/109 (85.32%), Query Frame = 0


Query: 1   QDLQNWRSKLDMQVNTYRSELSELKKSLNVEVENLRTEFEELRTTLQQQQEDVTASLRNL 60
           QDLQNWR KLD QVNTYRSELSELKKSLNVEVE LRTEF ELRTTLQQQQEDVT SLRNL
Sbjct: 50  QDLQNWRLKLDTQVNTYRSELSELKKSLNVEVEQLRTEFRELRTTLQQQQEDVTTSLRNL 109

Query: 61  GLQDVSMDNDETQRQHPIAESSDKEAHDANEVKDG-HALTEDKGNEAEN 109
           G+QD S DN++T+ QHP+AESSDKE  D  + KDG H LTE KGNEAEN
Sbjct: 110 GVQDDSKDNNKTRHQHPVAESSDKEDEDEGK-KDGLHGLTEGKGNEAEN 157

[Close]

BLAST of MS014608 vs. ExPASy TrEMBL
Match: A0A5D3D134 (CAP-Gly domain-containing linker protein 1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G00970 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 3.2e-32
Identity = 90/109 (82.57%), Postives = 96/109 (88.07%), Query Frame = 0


Query: 1   QDLQNWRSKLDMQVNTYRSELSELKKSLNVEVENLRTEFEELRTTLQQQQEDVTASLRNL 60
           QDLQNWRSKLD QVNTYRSELSELKKSLNVEVE+LRTEF+ELRTTLQQQQEDVT SLRNL
Sbjct: 47  QDLQNWRSKLDTQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNL 106

Query: 61  GLQDVSMDNDETQRQHPIAESSDKEAHDANEV-KDGHALTEDKGNEAEN 109
           GLQDVS+D +ETQ QHP A S DKE  DA+E  KDG  LTE+KGNEAEN
Sbjct: 107 GLQDVSVDTNETQHQHP-AGSRDKE--DADEAKKDG--LTEEKGNEAEN 150

[Close]

BLAST of MS014608 vs. ExPASy TrEMBL
Match: A0A1S3AY29 (CAP-Gly domain-containing linker protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483838 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 3.2e-32
Identity = 90/109 (82.57%), Postives = 96/109 (88.07%), Query Frame = 0


Query: 1   QDLQNWRSKLDMQVNTYRSELSELKKSLNVEVENLRTEFEELRTTLQQQQEDVTASLRNL 60
           QDLQNWRSKLD QVNTYRSELSELKKSLNVEVE+LRTEF+ELRTTLQQQQEDVT SLRNL
Sbjct: 47  QDLQNWRSKLDTQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNL 106

Query: 61  GLQDVSMDNDETQRQHPIAESSDKEAHDANEV-KDGHALTEDKGNEAEN 109
           GLQDVS+D +ETQ QHP A S DKE  DA+E  KDG  LTE+KGNEAEN
Sbjct: 107 GLQDVSVDTNETQHQHP-AGSRDKE--DADEAKKDG--LTEEKGNEAEN 150

[Close]

BLAST of MS014608 vs. ExPASy TrEMBL
Match: A0A6J1GVY7 (CAP-Gly domain-containing linker protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111457976 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 5.4e-32
Identity = 87/109 (79.82%), Postives = 95/109 (87.16%), Query Frame = 0


Query: 1   QDLQNWRSKLDMQVNTYRSELSELKKSLNVEVENLRTEFEELRTTLQQQQEDVTASLRNL 60
           QDLQNWRSKLD QVNTYRSELSELKKSLNVEVE+LRTEF+ELRTTLQQQQEDVT SLRNL
Sbjct: 50  QDLQNWRSKLDTQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNL 109

Query: 61  GLQDVSMDNDETQRQHPIAESSDKEAHDANE-VKDGHALTEDKGNEAEN 109
           GLQDVS+DN+ET+ QHP AE S+KE  DA E  K+G   TE+KGNEA N
Sbjct: 110 GLQDVSVDNNETRHQHP-AEISEKE--DAGEATKEGRGSTEEKGNEAGN 155

[Close]

BLAST of MS014608 vs. TAIR 10
Match: AT4G15790.1 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 411 Blast hits to 380 proteins in 121 species: Archae - 4; Bacteria - 107; Metazoa - 85; Fungi - 29; Plants - 59; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink). )

HSP 1 Score: 85.9 bits (211), Expect = 2.2e-17
Identity = 52/92 (56.52%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 1   QDLQNWRSKLDMQVNTYRSELSELKKSLNVEVENLRTEFEELRTTLQQQQEDVTASLRNL 60
           QDLQ+WR KLD QV  YR ELS LKK+LN+EVE LR EF++L+TTL QQQ+DV+ASL++L
Sbjct: 54  QDLQSWRGKLDTQVKVYREELSGLKKTLNLEVEQLREEFKDLKTTLNQQQDDVSASLKSL 113

Query: 61  GLQDVSMDND---ETQRQHPIAESSDKEAHDA 90
           GLQD     D   E   +   A S+D  A +A
Sbjct: 114 GLQDSKEQIDKRSEVTEEKVEALSTDDNAKEA 145

The following BLAST results are available for this feature:

BLAST of MS014608 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137849.1	3.8e-48	100.00	uncharacterized protein LOC111009183 [Momordica charantia]	[more]
XP_022948034.1	5.9e-33	79.82	CAP-Gly domain-containing linker protein 1-like [Cucurbita moschata] >KAG7028975...	[more]
KAG6597517.1	5.9e-33	79.82	hypothetical protein SDJN03_10697, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023539906.1	3.0e-32	78.90	CAP-Gly domain-containing linker protein 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_004134206.1	3.0e-32	80.56	CAP-Gly domain-containing linker protein 1 [Cucumis sativus] >KAE8650394.1 hypot...	[more]

BLAST of MS014608 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS014608 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C8F7	1.9e-48	100.00	uncharacterized protein LOC111009183 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A6J1G8M8	2.9e-33	79.82	CAP-Gly domain-containing linker protein 1-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A5D3D134	3.2e-32	82.57	CAP-Gly domain-containing linker protein 1 isoform X2 OS=Cucumis melo var. makuw...	[more]
A0A1S3AY29	3.2e-32	82.57	CAP-Gly domain-containing linker protein 1 isoform X2 OS=Cucumis melo OX=3656 GN...	[more]
A0A6J1GVY7	5.4e-32	79.82	CAP-Gly domain-containing linker protein 1-like OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of MS014608 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15790.1	2.2e-17	56.52	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplas...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 18..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..108
None	No IPR available	PANTHER	PTHR34681	UVEAL AUTOANTIGEN WITH COILED-COIL/ANKYRIN	coord: 1..95
None	No IPR available	PANTHER	PTHR34681:SF2	UVEAL AUTOANTIGEN WITH COILED-COIL/ANKYRIN	coord: 1..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS014608.1	MS014608.1	mRNA