MS014589 (gene) Bitter gourd (TR) v1

Overview


Name	MS014589
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold553: 1119510 .. 1119827 (-)
RNA-Seq Expression	MS014589
Synteny	MS014589

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCCGCCGCGCTCCTCATTCCATCAATGGCGATTCTCATTCTGCTGCTCCATCCATCGCCTCGCATTGCCGCCCTCTCATCTTCCAACCACACTGCATCCACGTGGTGGGACAACGATTCCGAGTTCCTCATGGATTCCGAGATCAGCCGGATGCTGGTCGAGCTTCAGACTTTCCAAACCGGCGCCACCAAAAACGCCGACAAACCTGCGGCGGATTGCAATCGGCCGCCGCGGTACGACAGCTGCCTCGGCGAGAAGAGGACTACTCCGCCGCCCGAGAATTGCGGCACCTTCAATCGCGTCTCTCCTTCC

mRNA sequence

ATGGCCGCCGCCGCGCTCCTCATTCCATCAATGGCGATTCTCATTCTGCTGCTCCATCCATCGCCTCGCATTGCCGCCCTCTCATCTTCCAACCACACTGCATCCACGTGGTGGGACAACGATTCCGAGTTCCTCATGGATTCCGAGATCAGCCGGATGCTGGTCGAGCTTCAGACTTTCCAAACCGGCGCCACCAAAAACGCCGACAAACCTGCGGCGGATTGCAATCGGCCGCCGCGGTACGACAGCTGCCTCGGCGAGAAGAGGACTACTCCGCCGCCCGAGAATTGCGGCACCTTCAATCGCGTCTCTCCTTCC

Coding sequence (CDS)

ATGGCCGCCGCCGCGCTCCTCATTCCATCAATGGCGATTCTCATTCTGCTGCTCCATCCATCGCCTCGCATTGCCGCCCTCTCATCTTCCAACCACACTGCATCCACGTGGTGGGACAACGATTCCGAGTTCCTCATGGATTCCGAGATCAGCCGGATGCTGGTCGAGCTTCAGACTTTCCAAACCGGCGCCACCAAAAACGCCGACAAACCTGCGGCGGATTGCAATCGGCCGCCGCGGTACGACAGCTGCCTCGGCGAGAAGAGGACTACTCCGCCGCCCGAGAATTGCGGCACCTTCAATCGCGTCTCTCCTTCC

Protein sequence

MAAAALLIPSMAILILLLHPSPRIAALSSSNHTASTWWDNDSEFLMDSEISRMLVELQTFQTGATKNADKPAADCNRPPRYDSCLGEKRTTPPPENCGTFNRVSPS

Homology

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BLAST of MS014589 vs. NCBI nr
Match: XP_022143304.1 (uncharacterized protein LOC111013208 [Momordica charantia])

HSP 1 Score: 104.0 bits (258), Expect = 8.2e-19
Identity = 63/114 (55.26%), Postives = 81/114 (71.05%), Query Frame = 0


Query: 1   MAAAALLIP-SMAILILLLHPSPRIAALSSSNHTASTW------WDNDSEFLMDSEISRM 60
           +AAAAL+IP ++AI+ LLL P+  I AL SSN T++T        D DSEFLM+S +SR+
Sbjct: 3   VAAAALMIPTAVAIVFLLLSPTGCI-ALISSNDTSNTIKHLVGDKDLDSEFLMESHLSRI 62

Query: 61  LV-ELQTFQTGATKNADKPAADCNRPPRYDSCLGEKRTTPPPENCGTFNRVSPS 107
           L    Q FQT +T NA++ A DC+R PRYDSCLG+K   PPPENC T+NRV P+
Sbjct: 63  LASNSQNFQTSSTNNANRAAVDCSRQPRYDSCLGQKNGVPPPENCATYNRVCPT 115

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BLAST of MS014589 vs. NCBI nr
Match: KAG7011063.1 (hypothetical protein SDJN02_27861, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-18
Identity = 58/116 (50.00%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 3   AAALLIPSMAILILLLHPSPRIAALSSSNHTASTWWD------------NDSEFLMDSEI 62
           AA LL PSM IL ++L  +P   + ++ N TA+ W D            +DSEFLM++E 
Sbjct: 9   AATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETET 68

Query: 63  SRMLVELQTFQTGATKNADKPAA-DCNRPPRYDSCLGEKRTTPPPENCGTFNRVSP 106
           SRML++  +FQT  T N DK +A +CNRPPRYDSCLG+K + P PENC T NRV+P
Sbjct: 69  SRMLLDFNSFQTPNTNNPDKQSAPECNRPPRYDSCLGQKTSIPNPENCDTRNRVNP 124

[Close]

BLAST of MS014589 vs. NCBI nr
Match: KAG6607065.1 (hypothetical protein SDJN03_00407, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 101.7 bits (252), Expect = 4.1e-18
Identity = 57/116 (49.14%), Postives = 74/116 (63.79%), Query Frame = 0


Query: 3   AAALLIPSMAILILLLHPSPRIAALSSSNHTASTWWD------------NDSEFLMDSEI 62
           AA LL PSM IL ++L  +P   + ++ N TA+ W D            +DSEFLM++E 
Sbjct: 9   AATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETET 68

Query: 63  SRMLVELQTFQTGATKNADKPAA-DCNRPPRYDSCLGEKRTTPPPENCGTFNRVSP 106
           SRML++  +FQT  T N DK +A +CNRPPRYD CLG+K   P PENC T NRV+P
Sbjct: 69  SRMLLDFNSFQTPNTNNPDKQSAPECNRPPRYDGCLGQKNIIPNPENCDTRNRVNP 124

[Close]

BLAST of MS014589 vs. NCBI nr
Match: KAG6607028.1 (hypothetical protein SDJN03_00370, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036724.1 hypothetical protein SDJN02_00344 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 101.7 bits (252), Expect = 4.1e-18
Identity = 62/108 (57.41%), Postives = 76/108 (70.37%), Query Frame = 0


Query: 1   MAAAALLIPSMAILILLLHPSPRIAALSSSNHTASTWWDN--DSEFLMDSEISRMLVELQ 60
           MAAAAL+I +M I+ILLL+P+       +S+   S   D   +SEFLM   ISR+L E Q
Sbjct: 1   MAAAALMILAM-IIILLLNPT----GCDTSDAKRSLVGDENIESEFLMSLHISRVLAESQ 60

Query: 61  TFQTGATKNADKPA-ADCNRPPRYDSCLGEKRTTPPPENCGTFNRVSP 106
            F+T AT NA +PA  +C+RPPRYDSCLGEKR+TPPPENCG FNR  P
Sbjct: 61  GFETSATSNATEPAVGECDRPPRYDSCLGEKRSTPPPENCGPFNREHP 103

[Close]

BLAST of MS014589 vs. NCBI nr
Match: XP_022948338.1 (uncharacterized protein LOC111452044 [Cucurbita moschata])

HSP 1 Score: 100.5 bits (249), Expect = 9.0e-18
Identity = 62/116 (53.45%), Postives = 78/116 (67.24%), Query Frame = 0


Query: 1   MAAAALLIP-SMAILILLLHPSPRIAALS---SSNHTASTW------WDNDSEFLMDSEI 60
           MAAAA++IP +MAI+ILLL+P+   A  S    +N T++         D DSEFLM+S I
Sbjct: 1   MAAAAVIIPAAMAIMILLLNPTTSDALTSFKPLNNDTSAAGKYLIGDQDLDSEFLMESHI 60

Query: 61  SRMLVELQTFQTGATKNADKPA-ADCNRPPRYDSCLGEKRTTPPPENCGTFNRVSP 106
           SR+L   Q FQT  T +A+K +   C RPPRYDSCLG+K   PPPENCGTFNR +P
Sbjct: 61  SRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNP 116

[Close]

BLAST of MS014589 vs. ExPASy TrEMBL
Match: A0A6J1CNY1 (uncharacterized protein LOC111013208 OS=Momordica charantia OX=3673 GN=LOC111013208 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 4.0e-19
Identity = 63/114 (55.26%), Postives = 81/114 (71.05%), Query Frame = 0


Query: 1   MAAAALLIP-SMAILILLLHPSPRIAALSSSNHTASTW------WDNDSEFLMDSEISRM 60
           +AAAAL+IP ++AI+ LLL P+  I AL SSN T++T        D DSEFLM+S +SR+
Sbjct: 3   VAAAALMIPTAVAIVFLLLSPTGCI-ALISSNDTSNTIKHLVGDKDLDSEFLMESHLSRI 62

Query: 61  LV-ELQTFQTGATKNADKPAADCNRPPRYDSCLGEKRTTPPPENCGTFNRVSPS 107
           L    Q FQT +T NA++ A DC+R PRYDSCLG+K   PPPENC T+NRV P+
Sbjct: 63  LASNSQNFQTSSTNNANRAAVDCSRQPRYDSCLGQKNGVPPPENCATYNRVCPT 115

[Close]

BLAST of MS014589 vs. ExPASy TrEMBL
Match: A0A6J1G927 (uncharacterized protein LOC111452044 OS=Cucurbita moschata OX=3662 GN=LOC111452044 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 4.4e-18
Identity = 62/116 (53.45%), Postives = 78/116 (67.24%), Query Frame = 0


Query: 1   MAAAALLIP-SMAILILLLHPSPRIAALS---SSNHTASTW------WDNDSEFLMDSEI 60
           MAAAA++IP +MAI+ILLL+P+   A  S    +N T++         D DSEFLM+S I
Sbjct: 1   MAAAAVIIPAAMAIMILLLNPTTSDALTSFKPLNNDTSAAGKYLIGDQDLDSEFLMESHI 60

Query: 61  SRMLVELQTFQTGATKNADKPA-ADCNRPPRYDSCLGEKRTTPPPENCGTFNRVSP 106
           SR+L   Q FQT  T +A+K +   C RPPRYDSCLG+K   PPPENCGTFNR +P
Sbjct: 61  SRILAGSQNFQTSKTNDANKASGGGCGRPPRYDSCLGQKSNNPPPENCGTFNRNNP 116

[Close]

BLAST of MS014589 vs. ExPASy TrEMBL
Match: A0A6J1KBP5 (uncharacterized protein LOC111492854 OS=Cucurbita maxima OX=3661 GN=LOC111492854 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 9.8e-18
Identity = 61/116 (52.59%), Postives = 77/116 (66.38%), Query Frame = 0


Query: 1   MAAAALLIP-SMAILILLLHPSPRIA-----ALSSSNHTASTW----WDNDSEFLMDSEI 60
           MAAAA++IP +MAI+ILLL+P+   A      L++    A  +     D DSEFLM+S I
Sbjct: 1   MAAAAVMIPAAMAIMILLLNPTSSDALTTFKPLNNDTSAAGKYLIGDQDIDSEFLMESHI 60

Query: 61  SRMLVELQTFQTGATKNADKPA-ADCNRPPRYDSCLGEKRTTPPPENCGTFNRVSP 106
           SR+L   Q FQT  T +A+K +   C RPPRYDSCLG+K   PPPENCGTFNR +P
Sbjct: 61  SRILAGSQDFQTSKTNDANKASGGGCERPPRYDSCLGQKSNNPPPENCGTFNRNNP 116

[Close]

BLAST of MS014589 vs. ExPASy TrEMBL
Match: A0A6J1CP71 (uncharacterized protein LOC111013278 OS=Momordica charantia OX=3673 GN=LOC111013278 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.1e-16
Identity = 58/117 (49.57%), Postives = 71/117 (60.68%), Query Frame = 0


Query: 1   MAAAALLIPS-MAILILLLHPSPRIAALSSSNHTASTWWDN----------DSEFLMDSE 60
           MA AA++IP+ MA+ ILL +P    A  +S     +  W N           SEFLM+  
Sbjct: 1   MATAAVMIPTVMALAILLPNPIDCDALTTSKRLLNNETWGNHKRLIGDEDIGSEFLMELH 60

Query: 61  ISRMLVELQTFQTGATKNADKPAA-DCNRPPRYDSCLGEKRTTPPPENCGTFNRVSP 106
           +SR+L E   FQT  T NA+  +  DC RPPRYDSCLGEKR TPP ENCGTFNR +P
Sbjct: 61  LSRILAESLRFQTMTTPNANMGSVRDCERPPRYDSCLGEKRNTPPAENCGTFNRANP 117

[Close]

BLAST of MS014589 vs. ExPASy TrEMBL
Match: A0A0A0L711 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298570 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 9.1e-16
Identity = 56/116 (48.28%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 3   AAALLIP-SMAILILLLHPSPRIAALSS----SNHTAS-------TWWDNDSEFLMDSEI 62
           A AL+IP +MA+++++L P+    AL+S    +NHT+           D  S F+M+S I
Sbjct: 4   APALMIPAAMAMMLMMLIPTACGGALTSFKPLNNHTSGGLVKYMVEEEDIKSNFVMESHI 63

Query: 63  SRMLVELQTFQTGATKNADK-PAADCNRPPRYDSCLGEKRTTPPPENCGTFNRVSP 106
           SRML + Q F+T +T NA +  A +C+RPPRYDSCLG KR TPPP+NC TFNR  P
Sbjct: 64  SRMLADSQDFETSSTNNATQVSAGECDRPPRYDSCLGVKRNTPPPQNCSTFNREHP 119

The following BLAST results are available for this feature:

BLAST of MS014589 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143304.1	8.2e-19	55.26	uncharacterized protein LOC111013208 [Momordica charantia]	[more]
KAG7011063.1	1.1e-18	50.00	hypothetical protein SDJN02_27861, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6607065.1	4.1e-18	49.14	hypothetical protein SDJN03_00407, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6607028.1	4.1e-18	57.41	hypothetical protein SDJN03_00370, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022948338.1	9.0e-18	53.45	uncharacterized protein LOC111452044 [Cucurbita moschata]	[more]

BLAST of MS014589 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS014589 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CNY1	4.0e-19	55.26	uncharacterized protein LOC111013208 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1G927	4.4e-18	53.45	uncharacterized protein LOC111452044 OS=Cucurbita moschata OX=3662 GN=LOC1114520...	[more]
A0A6J1KBP5	9.8e-18	52.59	uncharacterized protein LOC111492854 OS=Cucurbita maxima OX=3661 GN=LOC111492854...	[more]
A0A6J1CP71	4.1e-16	49.57	uncharacterized protein LOC111013278 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A0A0L711	9.1e-16	48.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298570 PE=4 SV=1	[more]

BLAST of MS014589 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS014589.1	MS014589.1	mRNA