MS014579 (gene) Bitter gourd (TR) v1

Overview
NameMS014579
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold553: 1041949 .. 1042320 (+)
RNA-Seq ExpressionMS014579
SyntenyMS014579
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTTCAAACACCGGAGTTGCAATGGTGGTGGCGGTGACGGTGGCAGTCTTGTTTTTGACGTTGGGTGCCAACAACTGCAATGCTGCTCCTTTAAGTCCTTCAAATTTTGGTGACGAGTTTGTCGCCGTTTCAGCATCAATGTGGTGCAACGACCGCATTGAAGAATGCCTCACCGGAGAAGATGGCGTGGAGTCGGCATTTCCAAGCCTGCAATCAGGCTCCCCATACACAACTCCACAAACAGGACAACCTGAGACACCTATATGCAATCGGCCCAAAGACAACTATGGCCCCTGTCTCCAAAACCCACGCCCAATTAAAATTAATGAGCATTGCGGCGACGTGTACGCTCGAAACCGAGCCTGTCCGTCA

mRNA sequence

GCTTCAAACACCGGAGTTGCAATGGTGGTGGCGGTGACGGTGGCAGTCTTGTTTTTGACGTTGGGTGCCAACAACTGCAATGCTGCTCCTTTAAGTCCTTCAAATTTTGGTGACGAGTTTGTCGCCGTTTCAGCATCAATGTGGTGCAACGACCGCATTGAAGAATGCCTCACCGGAGAAGATGGCGTGGAGTCGGCATTTCCAAGCCTGCAATCAGGCTCCCCATACACAACTCCACAAACAGGACAACCTGAGACACCTATATGCAATCGGCCCAAAGACAACTATGGCCCCTGTCTCCAAAACCCACGCCCAATTAAAATTAATGAGCATTGCGGCGACGTGTACGCTCGAAACCGAGCCTGTCCGTCA

Coding sequence (CDS)

GCTTCAAACACCGGAGTTGCAATGGTGGTGGCGGTGACGGTGGCAGTCTTGTTTTTGACGTTGGGTGCCAACAACTGCAATGCTGCTCCTTTAAGTCCTTCAAATTTTGGTGACGAGTTTGTCGCCGTTTCAGCATCAATGTGGTGCAACGACCGCATTGAAGAATGCCTCACCGGAGAAGATGGCGTGGAGTCGGCATTTCCAAGCCTGCAATCAGGCTCCCCATACACAACTCCACAAACAGGACAACCTGAGACACCTATATGCAATCGGCCCAAAGACAACTATGGCCCCTGTCTCCAAAACCCACGCCCAATTAAAATTAATGAGCATTGCGGCGACGTGTACGCTCGAAACCGAGCCTGTCCGTCA

Protein sequence

ASNTGVAMVVAVTVAVLFLTLGANNCNAAPLSPSNFGDEFVAVSASMWCNDRIEECLTGEDGVESAFPSLQSGSPYTTPQTGQPETPICNRPKDNYGPCLQNPRPIKINEHCGDVYARNRACPS
Homology
BLAST of MS014579 vs. NCBI nr
Match: KAG6607070.1 (hypothetical protein SDJN03_00412, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 86.3 bits (212), Expect = 2.1e-13
Identity = 51/125 (40.80%), Postives = 71/125 (56.80%), Query Frame = 0

Query: 1   ASNTGVAMVVAVTVA--VLFLTLGANNCNAAPLSPSNFGDEFVAVSASMWCNDRIEECLT 60
           +SN+G  M  A   A  V  L L  ++C+ A  +PS++G+  VA +ASMWC+ R+EEC+T
Sbjct: 4   SSNSGAVMAAAAAAAMGVFILMLSGSHCSVASPTPSSYGNITVAAAASMWCDGRVEECVT 63

Query: 61  GEDGVESAFPSLQSGSP-YTTPQTGQPETPICNRPKDNYGPCLQNPRPIKINEHCGDVYA 120
            ED  ESAFPSL + +P + +  T     P+C RP D Y  C    R    N++CG    
Sbjct: 64  REDDGESAFPSLLASTPKFISFPTRNRNKPVCERPGD-YKSCFNARRTNTKNDNCG---T 123

Query: 121 RNRAC 123
             RAC
Sbjct: 124 YGRAC 124

BLAST of MS014579 vs. NCBI nr
Match: KAG6607071.1 (hypothetical protein SDJN03_00413, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 81.3 bits (199), Expect = 6.6e-12
Identity = 47/115 (40.87%), Postives = 68/115 (59.13%), Query Frame = 0

Query: 1   ASNTGVAMVVAVTVAVLFLTLGANNCNAAPLSPSNFGDEFVAVSASMWCNDRIEECLTGE 60
           +SN+G  ++ A  + V  L L  ++CN A  +PS++G+  VA +ASMWC+ R+EEC+T E
Sbjct: 4   SSNSG-GVMAAAAMGVFILVLSGSDCNVASPTPSSYGNNTVAAAASMWCDGRVEECVTRE 63

Query: 61  DGVESAFPSLQSGS-PYTTPQTGQPETPICNRPKDNYGPCLQNPRPIKIN-EHCG 114
               SAFPSLQ+ +  Y +P +      +C RP D Y  C  NPR    N  +CG
Sbjct: 64  GDSASAFPSLQTSTRKYISPSSVNSNKAVCERP-DEYRSCF-NPRRSNPNPNNCG 115

BLAST of MS014579 vs. NCBI nr
Match: KAG6607014.1 (Protein PTST, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-05
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 0

Query: 7  AMVVAVTVAVLFLTLGANNCNAAPLSPSNFGDEFVAVSASMWCNDRIEECLTGEDGVESA 66
          A ++A   A++ LTL A+N NAA LS SNFG+E  A + S WC+ R EECL G+D V+ +
Sbjct: 4  AAMMAAVAAIVVLTLAASNGNAASLSRSNFGNETDAGAPSTWCDRRTEECLVGDDDVDGS 63

BLAST of MS014579 vs. NCBI nr
Match: KGN57814.1 (hypothetical protein Csa_009509 [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 6.0e-05
Identity = 46/122 (37.70%), Postives = 67/122 (54.92%), Query Frame = 0

Query: 1   ASNTGVAM-------VVAVTVAVLFLTLGANNCNAAPLSPSNFGDE-FVAVSASMWCNDR 60
           +SNT  +M       +VAV + V+  T+GA++C AA L+ SN G+E   A ++S WCN  
Sbjct: 4   SSNTKTSMATPTTTTMVAVAIIVVVSTIGASHCKAASLN-SNLGNETTTAATSSTWCNSL 63

Query: 61  IEECLTG--EDGVE-SAFPSLQSGSPYTTPQTGQPETPICNR-PKDNYGPCLQNPRPIKI 111
            +ECL G  +D +E SAFPSL     Y T +T   +  +C R  + +   CL   RP  I
Sbjct: 64  DKECLIGVEDDNIETSAFPSL-----YNTVRTANGQKAVCGRVGRYDNQRCLPQKRPNPI 119

BLAST of MS014579 vs. ExPASy TrEMBL
Match: A0A0A0LA12 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G316270 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.9e-05
Identity = 46/122 (37.70%), Postives = 67/122 (54.92%), Query Frame = 0

Query: 1   ASNTGVAM-------VVAVTVAVLFLTLGANNCNAAPLSPSNFGDE-FVAVSASMWCNDR 60
           +SNT  +M       +VAV + V+  T+GA++C AA L+ SN G+E   A ++S WCN  
Sbjct: 4   SSNTKTSMATPTTTTMVAVAIIVVVSTIGASHCKAASLN-SNLGNETTTAATSSTWCNSL 63

Query: 61  IEECLTG--EDGVE-SAFPSLQSGSPYTTPQTGQPETPICNR-PKDNYGPCLQNPRPIKI 111
            +ECL G  +D +E SAFPSL     Y T +T   +  +C R  + +   CL   RP  I
Sbjct: 64  DKECLIGVEDDNIETSAFPSL-----YNTVRTANGQKAVCGRVGRYDNQRCLPQKRPNPI 119

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6607070.12.1e-1340.80hypothetical protein SDJN03_00412, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6607071.16.6e-1240.87hypothetical protein SDJN03_00413, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6607014.11.2e-0550.00Protein PTST, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia][more]
KGN57814.16.0e-0537.70hypothetical protein Csa_009509 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LA122.9e-0537.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G316270 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS014579.1MS014579.1mRNA