MS014576 (gene) Bitter gourd (TR) v1

Overview


Name	MS014576
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	NADH-ubiquinone reductase complex 1 MLRQ subunit
Location	scaffold553: 1021304 .. 1022429 (-)
RNA-Seq Expression	MS014576
Synteny	MS014576

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGGTTTATCCGCTACTGGCGGCCATGGGGTTTGTGACAAGTATGTGCGTATTTCAGCTTACCAGGAACATTCTTCTAAACCCTGACGTCAGGTAATTCCCATTTTTATTCCAATTAAATGTTGACCCAAAAAAAAAAATTTCTTTTAATTTCATCGAATTGTACTTTTAAACTTGAAAAAAAAAAGGTTGATTTTTACTTTCTAATATATTTTTTATTTGGGTAATCGTTAAAAAAAGAAATTCATATATGCCTTCAATAAATTATAAAACGTATATCTACTAGTTCACAATATTTCAAAGAAAAATGACAATAGAGTTAGTTTTTTATTTTGTCTAAATTTGTAAGTTTTGGCGTAATTATTCAATTGTTAGTTTTATATGAATGAGTGATTTTTTTAAGGTTATTTACATTATGTTTACTTATCAATTACCTTAAAATTTAATATATGGTAAAAAAGTGTAGCACCTATCTAAATCTACAGTCTAATTTGATGAAACTGAAAGTTTACCGTGAAAATTGTTAAAATTTATAGGGACAAATTCTGATTTTTTTTCTTTGAAATTTTCTTTTTTTAACAAAGTTTCATTTTATGCAAAAGAGTTATTCTTAAATGGAAATAAAAATGCAACTTATTTCATAACTCGTTTTATTCTTCACCAGCATCCTTTTTCTCCCTATATAGAAAAGGAAAAAGTTAAATTAAAAAATTTAAACATTACTTTGATTAAGTTTTTTTCTTTTTTTCATCTCTAGAAAAGTTAACTTTTTCATTTTGTTTACTAAATAAATGATTACAAAGCTTAATTTTCATGATTTAACTTTATACAATTTTAGGTAGGATTCCACATTATCCGTGTCTTTTTTTCCCCTCAAATGCCCAAAGAGACTAGAGAGAAAATATTTGCCGAATTTTAGAAATACAAAAAAAAAGTTTTAAAAAGAATTATGTATATATAATTGCATTGAATTTTTGTGTAGAGTGAACAAAACGCAGCGTAGCATGGGAGTTTTGGAGAACGGAGAGGAAGGGGAGAAGTATGCGGAGCATAGGCTCCGGCGGTTCCTCCGAACCCGACCGCCCGAAATCATGCCCACTATTAACCACTTTTTCTCCCAAGACAAA

mRNA sequence

AAGGTTTATCCGCTACTGGCGGCCATGGGGTTTGTGACAAGTATGTGCGTATTTCAGCTTACCAGGAACATTCTTCTAAACCCTGACGTCAGAGTGAACAAAACGCAGCGTAGCATGGGAGTTTTGGAGAACGGAGAGGAAGGGGAGAAGTATGCGGAGCATAGGCTCCGGCGGTTCCTCCGAACCCGACCGCCCGAAATCATGCCCACTATTAACCACTTTTTCTCCCAAGACAAA

Coding sequence (CDS)

AAGGTTTATCCGCTACTGGCGGCCATGGGGTTTGTGACAAGTATGTGCGTATTTCAGCTTACCAGGAACATTCTTCTAAACCCTGACGTCAGAGTGAACAAAACGCAGCGTAGCATGGGAGTTTTGGAGAACGGAGAGGAAGGGGAGAAGTATGCGGAGCATAGGCTCCGGCGGTTCCTCCGAACCCGACCGCCCGAAATCATGCCCACTATTAACCACTTTTTCTCCCAAGACAAA

Protein sequence

KVYPLLAAMGFVTSMCVFQLTRNILLNPDVRVNKTQRSMGVLENGEEGEKYAEHRLRRFLRTRPPEIMPTINHFFSQDK

Homology

[Close]

BLAST of MS014576 vs. NCBI nr
Match: XP_022155075.1 (uncharacterized protein LOC111022208 [Momordica charantia])

HSP 1 Score: 161.4 bits (407), Expect = 3.2e-36
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  KVYPLLAAMGFVTSMCVFQLTRNILLNPDVRVNKTQRSMGVLENGEEGEKYAEHRLRRFL 60
          +VYPLLAAMGFVTSMCVFQLTRNILLNPDVRVNKTQRSMGVLENGEEGEKYAEHRLRRFL
Sbjct: 8  EVYPLLAAMGFVTSMCVFQLTRNILLNPDVRVNKTQRSMGVLENGEEGEKYAEHRLRRFL 67

Query: 61 RTRPPEIMPTINHFFSQDK 80
          RTRPPEIMPTINHFFSQDK
Sbjct: 68 RTRPPEIMPTINHFFSQDK 86

[Close]

BLAST of MS014576 vs. NCBI nr
Match: XP_038883437.1 (uncharacterized protein LOC120074394 [Benincasa hispida])

HSP 1 Score: 146.0 bits (367), Expect = 1.4e-31
Identity = 69/79 (87.34%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1  KVYPLLAAMGFVTSMCVFQLTRNILLNPDVRVNKTQRSMGVLENGEEGEKYAEHRLRRFL 60
          +VYPLLAAMGFVTSMCVFQLTRNI++NPDVRVNK  R MGVLEN EEGEKY+EH LRRFL
Sbjct: 8  EVYPLLAAMGFVTSMCVFQLTRNIMINPDVRVNKAHRKMGVLENEEEGEKYSEHSLRRFL 67

Query: 61 RTRPPEIMPTINHFFSQDK 80
          RTRPPEIMP INHFFSQDK
Sbjct: 68 RTRPPEIMPNINHFFSQDK 86

[Close]

BLAST of MS014576 vs. NCBI nr
Match: XP_023528505.1 (uncharacterized protein LOC111791411 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 146.0 bits (367), Expect = 1.4e-31
Identity = 69/79 (87.34%), Postives = 74/79 (93.67%), Query Frame = 0


Query: 1  KVYPLLAAMGFVTSMCVFQLTRNILLNPDVRVNKTQRSMGVLENGEEGEKYAEHRLRRFL 60
          +VYPL+AAMGFVT+MCVFQLTRNIL+NPDVRVNK  R MGVLENGEEGEKYA+H LRRFL
Sbjct: 8  EVYPLMAAMGFVTTMCVFQLTRNILINPDVRVNKEHRRMGVLENGEEGEKYAQHTLRRFL 67

Query: 61 RTRPPEIMPTINHFFSQDK 80
          RTRPPEIMPTIN FFSQDK
Sbjct: 68 RTRPPEIMPTINRFFSQDK 86

[Close]

BLAST of MS014576 vs. NCBI nr
Match: XP_022980760.1 (uncharacterized protein LOC111480034 [Cucurbita maxima])

HSP 1 Score: 144.1 bits (362), Expect = 5.3e-31
Identity = 69/79 (87.34%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1  KVYPLLAAMGFVTSMCVFQLTRNILLNPDVRVNKTQRSMGVLENGEEGEKYAEHRLRRFL 60
          +VYPL+AAMGFVT+MCVFQLTRNIL+NPDVRVNK  R MGVLEN EEGEKYAEH LRRFL
Sbjct: 8  EVYPLMAAMGFVTTMCVFQLTRNILINPDVRVNKEHRRMGVLENEEEGEKYAEHSLRRFL 67

Query: 61 RTRPPEIMPTINHFFSQDK 80
          RTRPPEIMPTIN FFSQDK
Sbjct: 68 RTRPPEIMPTINRFFSQDK 86

[Close]

BLAST of MS014576 vs. NCBI nr
Match: XP_008464582.1 (PREDICTED: uncharacterized protein LOC103502424 [Cucumis melo])

HSP 1 Score: 144.1 bits (362), Expect = 5.3e-31
Identity = 69/79 (87.34%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1  KVYPLLAAMGFVTSMCVFQLTRNILLNPDVRVNKTQRSMGVLENGEEGEKYAEHRLRRFL 60
          +VYPLLAAMGFVTSMCVFQLTRNIL+NPDVRVNK  R MGVLEN EEGEKY+EH LRRFL
Sbjct: 8  EVYPLLAAMGFVTSMCVFQLTRNILINPDVRVNKAHRRMGVLENEEEGEKYSEHSLRRFL 67

Query: 61 RTRPPEIMPTINHFFSQDK 80
          RTRPPEIMPTIN +FSQDK
Sbjct: 68 RTRPPEIMPTINRYFSQDK 86

[Close]

BLAST of MS014576 vs. ExPASy TrEMBL
Match: A0A6J1DLE5 (uncharacterized protein LOC111022208 OS=Momordica charantia OX=3673 GN=LOC111022208 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.6e-36
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  KVYPLLAAMGFVTSMCVFQLTRNILLNPDVRVNKTQRSMGVLENGEEGEKYAEHRLRRFL 60
          +VYPLLAAMGFVTSMCVFQLTRNILLNPDVRVNKTQRSMGVLENGEEGEKYAEHRLRRFL
Sbjct: 8  EVYPLLAAMGFVTSMCVFQLTRNILLNPDVRVNKTQRSMGVLENGEEGEKYAEHRLRRFL 67

Query: 61 RTRPPEIMPTINHFFSQDK 80
          RTRPPEIMPTINHFFSQDK
Sbjct: 68 RTRPPEIMPTINHFFSQDK 86

[Close]

BLAST of MS014576 vs. ExPASy TrEMBL
Match: A0A6J1IXF3 (uncharacterized protein LOC111480034 OS=Cucurbita maxima OX=3661 GN=LOC111480034 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.6e-31
Identity = 69/79 (87.34%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1  KVYPLLAAMGFVTSMCVFQLTRNILLNPDVRVNKTQRSMGVLENGEEGEKYAEHRLRRFL 60
          +VYPL+AAMGFVT+MCVFQLTRNIL+NPDVRVNK  R MGVLEN EEGEKYAEH LRRFL
Sbjct: 8  EVYPLMAAMGFVTTMCVFQLTRNILINPDVRVNKEHRRMGVLENEEEGEKYAEHSLRRFL 67

Query: 61 RTRPPEIMPTINHFFSQDK 80
          RTRPPEIMPTIN FFSQDK
Sbjct: 68 RTRPPEIMPTINRFFSQDK 86

[Close]

BLAST of MS014576 vs. ExPASy TrEMBL
Match: A0A1S3CLU5 (uncharacterized protein LOC103502424 OS=Cucumis melo OX=3656 GN=LOC103502424 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.6e-31
Identity = 69/79 (87.34%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1  KVYPLLAAMGFVTSMCVFQLTRNILLNPDVRVNKTQRSMGVLENGEEGEKYAEHRLRRFL 60
          +VYPLLAAMGFVTSMCVFQLTRNIL+NPDVRVNK  R MGVLEN EEGEKY+EH LRRFL
Sbjct: 8  EVYPLLAAMGFVTSMCVFQLTRNILINPDVRVNKAHRRMGVLENEEEGEKYSEHSLRRFL 67

Query: 61 RTRPPEIMPTINHFFSQDK 80
          RTRPPEIMPTIN +FSQDK
Sbjct: 68 RTRPPEIMPTINRYFSQDK 86

[Close]

BLAST of MS014576 vs. ExPASy TrEMBL
Match: A0A7J6GRI1 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_010100 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.7e-31
Identity = 66/79 (83.54%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1  KVYPLLAAMGFVTSMCVFQLTRNILLNPDVRVNKTQRSMGVLENGEEGEKYAEHRLRRFL 60
          +VYPL+AAM FVTSMCVFQLTRN+ +NPDVRVNK  RSMGVL+N EEGEKYAEH LRRFL
Sbjct: 8  EVYPLMAAMTFVTSMCVFQLTRNVFMNPDVRVNKANRSMGVLDNKEEGEKYAEHSLRRFL 67

Query: 61 RTRPPEIMPTINHFFSQDK 80
          RTRPPE+MPTINHFFS+DK
Sbjct: 68 RTRPPEVMPTINHFFSEDK 86

[Close]

BLAST of MS014576 vs. ExPASy TrEMBL
Match: A0A2P5B296 (NADH-ubiquinone reductase complex 1 MLRQ subunit OS=Parasponia andersonii OX=3476 GN=PanWU01x14_278080 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.7e-31
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1  KVYPLLAAMGFVTSMCVFQLTRNILLNPDVRVNKTQRSMGVLENGEEGEKYAEHRLRRFL 60
          +VYPL+AAM FVTSMCVFQLTRN+ LNPDVRVNK  RSMGVL+N EEGEKYAEH LR+FL
Sbjct: 8  EVYPLMAAMTFVTSMCVFQLTRNVFLNPDVRVNKANRSMGVLDNKEEGEKYAEHSLRKFL 67

Query: 61 RTRPPEIMPTINHFFSQDK 80
          RTRPPEIMPTINHFFS+DK
Sbjct: 68 RTRPPEIMPTINHFFSEDK 86

[Close]

BLAST of MS014576 vs. TAIR 10
Match: AT3G29970.1 (B12D protein )

HSP 1 Score: 119.0 bits (297), Expect = 1.7e-27
Identity = 53/78 (67.95%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 1  KVYPLLAAMGFVTSMCVFQLTRNILLNPDVRVNKTQRSMGVLENGEEGEKYAEHRLRRFL 60
          +VYPLL AMGFVTSM VFQLTRN  LNPD R+NK  R MG+LEN +EGEKYA+H  R++L
Sbjct: 8  EVYPLLGAMGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGILENKDEGEKYAQHNFRKYL 67

Query: 61 RTRPPEIMPTINHFFSQD 79
          RTR P++MP++N FFSQ+
Sbjct: 68 RTRQPQVMPSLNRFFSQE 85

[Close]

BLAST of MS014576 vs. TAIR 10
Match: AT3G48140.1 (B12D protein )

HSP 1 Score: 86.3 bits (212), Expect = 1.2e-17
Identity = 40/76 (52.63%), Postives = 52/76 (68.42%), Query Frame = 0


Query: 1  KVYPLLAAMGFVTSMCVFQLTRNILLNPDVRVNKTQRSMGVLENGEEGEKYAEHRLRRFL 60
          +VYPL AA G    +C F L RNI  NP+VR  K  R+ G+L+N  EGEKY E+ LR+F+
Sbjct: 9  EVYPLFAATGVAVGICAFSLIRNITGNPEVRCTKENRAAGILDNHAEGEKYKENFLRKFV 68

Query: 61 RTRPPEIMPTINHFFS 77
          R + PEIMP +N FF+
Sbjct: 69 RNKKPEIMPGLNKFFT 84

The following BLAST results are available for this feature:

BLAST of MS014576 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155075.1	3.2e-36	98.73	uncharacterized protein LOC111022208 [Momordica charantia]	[more]
XP_038883437.1	1.4e-31	87.34	uncharacterized protein LOC120074394 [Benincasa hispida]	[more]
XP_023528505.1	1.4e-31	87.34	uncharacterized protein LOC111791411 [Cucurbita pepo subsp. pepo]	[more]
XP_022980760.1	5.3e-31	87.34	uncharacterized protein LOC111480034 [Cucurbita maxima]	[more]
XP_008464582.1	5.3e-31	87.34	PREDICTED: uncharacterized protein LOC103502424 [Cucumis melo]	[more]

BLAST of MS014576 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS014576 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DLE5	1.6e-36	98.73	uncharacterized protein LOC111022208 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1IXF3	2.6e-31	87.34	uncharacterized protein LOC111480034 OS=Cucurbita maxima OX=3661 GN=LOC111480034...	[more]
A0A1S3CLU5	2.6e-31	87.34	uncharacterized protein LOC103502424 OS=Cucumis melo OX=3656 GN=LOC103502424 PE=...	[more]
A0A7J6GRI1	5.7e-31	83.54	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_010100 PE=4 SV=1	[more]
A0A2P5B296	5.7e-31	84.81	NADH-ubiquinone reductase complex 1 MLRQ subunit OS=Parasponia andersonii OX=347...	[more]

BLAST of MS014576 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G29970.1	1.7e-27	67.95	B12D protein	[more]
AT3G48140.1	1.2e-17	52.63	B12D protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010530	NADH-ubiquinone reductase complex 1 MLRQ subunit	PFAM	PF06522	B12D	coord: 2..66 e-value: 1.7E-22 score: 79.0
None	No IPR available	PANTHER	PTHR33417	G-BOX BINDING PROTEIN	coord: 2..79
None	No IPR available	PANTHER	PTHR33417:SF19	SUBFAMILY NOT NAMED	coord: 2..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS014576.1	MS014576.1	mRNA