MS014574 (gene) Bitter gourd (TR) v1

Overview


Name	MS014574
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Heat shock protein DnaJ, cysteine-rich domain containing protein
Location	scaffold553: 1011193 .. 1011306 (-)
RNA-Seq Expression	MS014574
Synteny	MS014574

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAACGTAACAGCGAGCGAAGTGGCCGGCTTCGCGGTGGGGGCTCTGCTGGTTTGCGCCACCATTTCTGCTCCCAGAATCGACGCTTTCATCTCTTCTTCTCAGCGCAGG

mRNA sequence

ATGGAGAACGTAACAGCGAGCGAAGTGGCCGGCTTCGCGGTGGGGGCTCTGCTGGTTTGCGCCACCATTTCTGCTCCCAGAATCGACGCTTTCATCTCTTCTTCTCAGCGCAGG

Coding sequence (CDS)

ATGGAGAACGTAACAGCGAGCGAAGTGGCCGGCTTCGCGGTGGGGGCTCTGCTGGTTTGCGCCACCATTTCTGCTCCCAGAATCGACGCTTTCATCTCTTCTTCTCAGCGCAGG

Protein sequence

MENVTASEVAGFAVGALLVCATISAPRIDAFISSSQRR

Homology

[Close]

BLAST of MS014574 vs. NCBI nr
Match: XP_022980758.1 (uncharacterized protein LOC111480031 [Cucurbita maxima])

HSP 1 Score: 71.2 bits (173), Expect = 2.1e-09
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MENVTASEVAGFAVGALLVCATISAPRIDAFISSSQRR 39
          MENVTASE+AGFAVGALLVCATISAPRIDAFISSSQRR
Sbjct: 10 MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRR 47

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BLAST of MS014574 vs. NCBI nr
Match: XP_023528018.1 (uncharacterized protein LOC111791062 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 71.2 bits (173), Expect = 2.1e-09
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MENVTASEVAGFAVGALLVCATISAPRIDAFISSSQRR 39
          MENVTASE+AGFAVGALLVCATISAPRIDAFISSSQRR
Sbjct: 10 MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRR 47

[Close]

BLAST of MS014574 vs. NCBI nr
Match: XP_022955904.1 (uncharacterized protein LOC111457749 [Cucurbita moschata] >KAG6581722.1 hypothetical protein SDJN03_21724, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018197.1 hypothetical protein SDJN02_20065 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 71.2 bits (173), Expect = 2.1e-09
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MENVTASEVAGFAVGALLVCATISAPRIDAFISSSQRR 39
          MENVTASE+AGFAVGALLVCATISAPRIDAFISSSQRR
Sbjct: 1  MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRR 38

[Close]

BLAST of MS014574 vs. NCBI nr
Match: XP_022155031.1 (uncharacterized protein LOC111022174 [Momordica charantia])

HSP 1 Score: 70.5 bits (171), Expect = 3.6e-09
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 1  MENVTASEVAGFAVGALLVCATISAPRIDAFISSSQR 38
          MENVTASEVAGFAVGALLVCATISAPRIDAFISSSQR
Sbjct: 1  MENVTASEVAGFAVGALLVCATISAPRIDAFISSSQR 37

[Close]

BLAST of MS014574 vs. NCBI nr
Match: XP_004137138.1 (uncharacterized protein LOC101207960 [Cucumis sativus] >KGN53782.1 hypothetical protein Csa_015216 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 3.0e-08
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 1  MENVTASEVAGFAVGALLVCATISAPRIDAFISSSQRR 39
          ME++T SE+AGFAVGALLVCATISAPRIDAFISSSQRR
Sbjct: 1  MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRR 38

[Close]

BLAST of MS014574 vs. ExPASy TrEMBL
Match: A0A6J1J083 (uncharacterized protein LOC111480031 OS=Cucurbita maxima OX=3661 GN=LOC111480031 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.0e-09
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MENVTASEVAGFAVGALLVCATISAPRIDAFISSSQRR 39
          MENVTASE+AGFAVGALLVCATISAPRIDAFISSSQRR
Sbjct: 10 MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRR 47

[Close]

BLAST of MS014574 vs. ExPASy TrEMBL
Match: A0A6J1GXK9 (uncharacterized protein LOC111457749 OS=Cucurbita moschata OX=3662 GN=LOC111457749 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.0e-09
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 1  MENVTASEVAGFAVGALLVCATISAPRIDAFISSSQRR 39
          MENVTASE+AGFAVGALLVCATISAPRIDAFISSSQRR
Sbjct: 1  MENVTASELAGFAVGALLVCATISAPRIDAFISSSQRR 38

[Close]

BLAST of MS014574 vs. ExPASy TrEMBL
Match: A0A6J1DQH1 (uncharacterized protein LOC111022174 OS=Momordica charantia OX=3673 GN=LOC111022174 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.7e-09
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 1  MENVTASEVAGFAVGALLVCATISAPRIDAFISSSQR 38
          MENVTASEVAGFAVGALLVCATISAPRIDAFISSSQR
Sbjct: 1  MENVTASEVAGFAVGALLVCATISAPRIDAFISSSQR 37

[Close]

BLAST of MS014574 vs. ExPASy TrEMBL
Match: A0A5A7TRM8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold261G00510 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.5e-08
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 1  MENVTASEVAGFAVGALLVCATISAPRIDAFISSSQRR 39
          ME++T SE+AGFAVGALLVCATISAPRIDAFISSSQRR
Sbjct: 20 MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRR 57

[Close]

BLAST of MS014574 vs. ExPASy TrEMBL
Match: A0A0A0KZH5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G127010 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.5e-08
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 1  MENVTASEVAGFAVGALLVCATISAPRIDAFISSSQRR 39
          ME++T SE+AGFAVGALLVCATISAPRIDAFISSSQRR
Sbjct: 1  MESITGSELAGFAVGALLVCATISAPRIDAFISSSQRR 38

[Close]

BLAST of MS014574 vs. TAIR 10
Match: AT5G15802.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35 Blast hits to 35 proteins in 15 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 7.2e-08
Identity = 25/38 (65.79%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 1  MENVTASEVAGFAVGALLVCATISAPRIDAFISSSQRR 39
          M+++T++EVAG AVGALL+ ATI+AP++DAFI++SQRR
Sbjct: 1  MQSLTSNEVAGLAVGALLLGATIAAPKVDAFIAASQRR 38

The following BLAST results are available for this feature:

BLAST of MS014574 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022980758.1	2.1e-09	97.37	uncharacterized protein LOC111480031 [Cucurbita maxima]	[more]
XP_023528018.1	2.1e-09	97.37	uncharacterized protein LOC111791062 [Cucurbita pepo subsp. pepo]	[more]
XP_022955904.1	2.1e-09	97.37	uncharacterized protein LOC111457749 [Cucurbita moschata] >KAG6581722.1 hypothet...	[more]
XP_022155031.1	3.6e-09	100.00	uncharacterized protein LOC111022174 [Momordica charantia]	[more]
XP_004137138.1	3.0e-08	89.47	uncharacterized protein LOC101207960 [Cucumis sativus] >KGN53782.1 hypothetical ...	[more]

BLAST of MS014574 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS014574 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J083	1.0e-09	97.37	uncharacterized protein LOC111480031 OS=Cucurbita maxima OX=3661 GN=LOC111480031...	[more]
A0A6J1GXK9	1.0e-09	97.37	uncharacterized protein LOC111457749 OS=Cucurbita moschata OX=3662 GN=LOC1114577...	[more]
A0A6J1DQH1	1.7e-09	100.00	uncharacterized protein LOC111022174 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A5A7TRM8	1.5e-08	89.47	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KZH5	1.5e-08	89.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G127010 PE=4 SV=1	[more]

BLAST of MS014574 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15802.1	7.2e-08	65.79	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37760:SF1	CHAPERONE	coord: 1..38
None	No IPR available	PANTHER	PTHR37760	CHAPERONE	coord: 1..38

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS014574.1	MS014574.1	mRNA