MS014563 (gene) Bitter gourd (TR) v1

Overview


Name	MS014563
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold553: 908481 .. 908678 (+)
RNA-Seq Expression	MS014563
Synteny	MS014563

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGCCGAGTACTATCAACGCAAAGAGATCAAGAAATTCTAACCATCTTAAAGCAAAATCGTCCGGTTCGTCGAAGGCGAGAGATGAAGAAACTCGAAGGCTTCTCAAGGCAGCCAAAGAGATAGCCAATTTGATGCACAAAGATTATAAAGATTGGGCTCACCGCAAGCCCCCAATCAACAACCAAGAACCTTTGCAT

mRNA sequence

GAGCCGAGTACTATCAACGCAAAGAGATCAAGAAATTCTAACCATCTTAAAGCAAAATCGTCCGGTTCGTCGAAGGCGAGAGATGAAGAAACTCGAAGGCTTCTCAAGGCAGCCAAAGAGATAGCCAATTTGATGCACAAAGATTATAAAGATTGGGCTCACCGCAAGCCCCCAATCAACAACCAAGAACCTTTGCAT

Coding sequence (CDS)

GAGCCGAGTACTATCAACGCAAAGAGATCAAGAAATTCTAACCATCTTAAAGCAAAATCGTCCGGTTCGTCGAAGGCGAGAGATGAAGAAACTCGAAGGCTTCTCAAGGCAGCCAAAGAGATAGCCAATTTGATGCACAAAGATTATAAAGATTGGGCTCACCGCAAGCCCCCAATCAACAACCAAGAACCTTTGCAT

Protein sequence

EPSTINAKRSRNSNHLKAKSSGSSKARDEETRRLLKAAKEIANLMHKDYKDWAHRKPPINNQEPLH

Homology

[Close]

BLAST of MS014563 vs. NCBI nr
Match: XP_022155069.1 (uncharacterized protein LOC111022203 [Momordica charantia])

HSP 1 Score: 129.8 bits (325), Expect = 8.7e-27
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1   EPSTINAKRSRNSNHLKAKSSGSSKARDEETRRLLKAAKEIANLMHKDYKDWAHRKPPIN 60
           EPSTINAKRSRNSNHLKAKSSGSSKARDEETRRLLKAAKEIANLMHKDYKDWAHRKPPIN
Sbjct: 123 EPSTINAKRSRNSNHLKAKSSGSSKARDEETRRLLKAAKEIANLMHKDYKDWAHRKPPIN 182

Query: 61  NQEPLH 67
           NQEPLH
Sbjct: 183 NQEPLH 188

[Close]

BLAST of MS014563 vs. NCBI nr
Match: XP_011653405.2 (uncharacterized protein LOC105435212 [Cucumis sativus] >KGN53766.1 hypothetical protein Csa_015188 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 2.9e-14
Identity = 47/70 (67.14%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 1   EPSTINAKRSRNSNHL-KAKSSGSSK---ARDEETRRLLKAAKEIANLMHKDYKDWAHRK 60
           +  TI+A RS+NS H+ K KS+   +   ARD+ET+RLLKAA+EIANLMHKDYK+WAHRK
Sbjct: 121 DQETIDAARSKNSQHVYKVKSTNLKRVILARDDETQRLLKAAREIANLMHKDYKEWAHRK 180

Query: 61  PPINNQEPLH 67
           PPINN+EPLH
Sbjct: 181 PPINNREPLH 190

[Close]

BLAST of MS014563 vs. NCBI nr
Match: XP_008455564.1 (PREDICTED: uncharacterized protein LOC103495712 [Cucumis melo] >KAA0054746.1 uncharacterized protein E6C27_scaffold437G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 2.4e-13
Identity = 46/70 (65.71%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 1   EPSTINAKRSRNSNHL-KAKSSGSSK---ARDEETRRLLKAAKEIANLMHKDYKDWAHRK 60
           +  TI+AKRS+ S H+ K K + S +   ARD+E++RLLKAA+EIANLMHKDYK+WAHRK
Sbjct: 121 DQETIDAKRSKISQHVYKVKWTNSKRVILARDDESQRLLKAAREIANLMHKDYKEWAHRK 180

Query: 61  PPINNQEPLH 67
           PPINN+EPLH
Sbjct: 181 PPINNREPLH 190

[Close]

BLAST of MS014563 vs. NCBI nr
Match: TYJ99697.1 (uncharacterized protein E5676_scaffold562G00930 [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 2.4e-13
Identity = 46/70 (65.71%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 1   EPSTINAKRSRNSNHL-KAKSSGSSK---ARDEETRRLLKAAKEIANLMHKDYKDWAHRK 60
           +  TI+AKRS+ S H+ K K + S +   ARD+E++RLLKAA+EIANLMHKDYK+WAHRK
Sbjct: 91  DQETIDAKRSKISQHVYKVKWTNSKRVILARDDESQRLLKAAREIANLMHKDYKEWAHRK 150

Query: 61  PPINNQEPLH 67
           PPINN+EPLH
Sbjct: 151 PPINNREPLH 160

[Close]

BLAST of MS014563 vs. NCBI nr
Match: KAG6581710.1 (hypothetical protein SDJN03_21712, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.0 bits (193), Expect = 1.8e-11
Identity = 42/63 (66.67%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 4   TINAKRSRNSNHLKAKSSGSSKARDEETRRLLKAAKEIANLMHKDYKDWAHRKPPINNQE 63
           T  AKR +NS+  K  S+     R+EET+RL+KAA+EIANLMHKDYKDW HRKPPINN+E
Sbjct: 122 TSEAKRWKNSSISKRVST-----REEETQRLVKAAREIANLMHKDYKDWGHRKPPINNRE 179

Query: 64  PLH 67
           PLH
Sbjct: 182 PLH 179

[Close]

BLAST of MS014563 vs. ExPASy TrEMBL
Match: A0A6J1DP50 (uncharacterized protein LOC111022203 OS=Momordica charantia OX=3673 GN=LOC111022203 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.2e-27
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1   EPSTINAKRSRNSNHLKAKSSGSSKARDEETRRLLKAAKEIANLMHKDYKDWAHRKPPIN 60
           EPSTINAKRSRNSNHLKAKSSGSSKARDEETRRLLKAAKEIANLMHKDYKDWAHRKPPIN
Sbjct: 123 EPSTINAKRSRNSNHLKAKSSGSSKARDEETRRLLKAAKEIANLMHKDYKDWAHRKPPIN 182

Query: 61  NQEPLH 67
           NQEPLH
Sbjct: 183 NQEPLH 188

[Close]

BLAST of MS014563 vs. ExPASy TrEMBL
Match: A0A0A0L0U7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G124880 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.4e-14
Identity = 47/70 (67.14%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 1   EPSTINAKRSRNSNHL-KAKSSGSSK---ARDEETRRLLKAAKEIANLMHKDYKDWAHRK 60
           +  TI+A RS+NS H+ K KS+   +   ARD+ET+RLLKAA+EIANLMHKDYK+WAHRK
Sbjct: 121 DQETIDAARSKNSQHVYKVKSTNLKRVILARDDETQRLLKAAREIANLMHKDYKEWAHRK 180

Query: 61  PPINNQEPLH 67
           PPINN+EPLH
Sbjct: 181 PPINNREPLH 190

[Close]

BLAST of MS014563 vs. ExPASy TrEMBL
Match: A0A5A7UKD7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G00200 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-13
Identity = 46/70 (65.71%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 1   EPSTINAKRSRNSNHL-KAKSSGSSK---ARDEETRRLLKAAKEIANLMHKDYKDWAHRK 60
           +  TI+AKRS+ S H+ K K + S +   ARD+E++RLLKAA+EIANLMHKDYK+WAHRK
Sbjct: 121 DQETIDAKRSKISQHVYKVKWTNSKRVILARDDESQRLLKAAREIANLMHKDYKEWAHRK 180

Query: 61  PPINNQEPLH 67
           PPINN+EPLH
Sbjct: 181 PPINNREPLH 190

[Close]

BLAST of MS014563 vs. ExPASy TrEMBL
Match: A0A5D3BKP4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00930 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-13
Identity = 46/70 (65.71%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 1   EPSTINAKRSRNSNHL-KAKSSGSSK---ARDEETRRLLKAAKEIANLMHKDYKDWAHRK 60
           +  TI+AKRS+ S H+ K K + S +   ARD+E++RLLKAA+EIANLMHKDYK+WAHRK
Sbjct: 91  DQETIDAKRSKISQHVYKVKWTNSKRVILARDDESQRLLKAAREIANLMHKDYKEWAHRK 150

Query: 61  PPINNQEPLH 67
           PPINN+EPLH
Sbjct: 151 PPINNREPLH 160

[Close]

BLAST of MS014563 vs. ExPASy TrEMBL
Match: A0A1S3C168 (uncharacterized protein LOC103495712 OS=Cucumis melo OX=3656 GN=LOC103495712 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-13
Identity = 46/70 (65.71%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 1   EPSTINAKRSRNSNHL-KAKSSGSSK---ARDEETRRLLKAAKEIANLMHKDYKDWAHRK 60
           +  TI+AKRS+ S H+ K K + S +   ARD+E++RLLKAA+EIANLMHKDYK+WAHRK
Sbjct: 121 DQETIDAKRSKISQHVYKVKWTNSKRVILARDDESQRLLKAAREIANLMHKDYKEWAHRK 180

Query: 61  PPINNQEPLH 67
           PPINN+EPLH
Sbjct: 181 PPINNREPLH 190

The following BLAST results are available for this feature:

BLAST of MS014563 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155069.1	8.7e-27	100.00	uncharacterized protein LOC111022203 [Momordica charantia]	[more]
XP_011653405.2	2.9e-14	67.14	uncharacterized protein LOC105435212 [Cucumis sativus] >KGN53766.1 hypothetical ...	[more]
XP_008455564.1	2.4e-13	65.71	PREDICTED: uncharacterized protein LOC103495712 [Cucumis melo] >KAA0054746.1 unc...	[more]
TYJ99697.1	2.4e-13	65.71	uncharacterized protein E5676_scaffold562G00930 [Cucumis melo var. makuwa]	[more]
KAG6581710.1	1.8e-11	66.67	hypothetical protein SDJN03_21712, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MS014563 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS014563 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DP50	4.2e-27	100.00	uncharacterized protein LOC111022203 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A0A0L0U7	1.4e-14	67.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G124880 PE=4 SV=1	[more]
A0A5A7UKD7	1.2e-13	65.71	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BKP4	1.2e-13	65.71	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C168	1.2e-13	65.71	uncharacterized protein LOC103495712 OS=Cucumis melo OX=3656 GN=LOC103495712 PE=...	[more]

BLAST of MS014563 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 27..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS014563.1	MS014563.1	mRNA