MS014562 (gene) Bitter gourd (TR) v1

Overview


Name	MS014562
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold553: 907246 .. 907922 (+)
RNA-Seq Expression	MS014562
Synteny	MS014562

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGAAGATGATGATAATGATCAAAATACCACTCATGAGCTTAGCCATTTGGCTTCTCTTCCTAATCTCTGTCTCCCATGCTCTCCCAGGTATCAATTTTACGATTAGTTTATTCTCGATCTCGAGTTACATTATTCCTCACACCTATCTTATTTTTCGGAAATCTTTGCTTTGGGTAGATAACTCAGACAAACAGTACTTGTCGCCTGCTGGAGTGAAATTTTCTGAATCGTCTTTAGAAGAGGTGATTTGTTAAGCTTTATTTTGCTAATCTTACAATTGCACAATCATTATTGATCCAAATAGCATGTAATTTTGTTTGGTTTTTCTGGGTTTTAGGAGGAAACCCTTGTGGGGTTGGATGCCATTGGCTTGAGGAAAATGGGGAATGGAAGAAAGAGAGTGGCAGTGAAGAGAATGATGAGGAAATTAGAGATTGCTACCAATGATGATCAGAGAGAAGAAGAACAAGATCAAGAAAGTTCAAGAATTATTTCAGGTGCAAACCACTCTGATAGATCAACATGCAACTTTGAAGATCAAAAGGGAGATCATTTTGGAGTTAGTAGAAAAATGGGTGACAAAAATTGTAAAAAAAGCCTCAATGTTGGTGGGTTTGCAACATTTGGTGCAGATTATAAAGGCCCTTTTCACCATCCTCCTAAACATAAC

mRNA sequence

ATGAAGAAGAAGATGATGATAATGATCAAAATACCACTCATGAGCTTAGCCATTTGGCTTCTCTTCCTAATCTCTGTCTCCCATGCTCTCCCAGGTATCAATTTTACGATTAGTTTATTCTCGATCTCGAGTTACATTATTCCTCACACCTATCTTATTTTTCGGAAATCTTTGCTTTGGGTAGATAACTCAGACAAACAGTACTTGTCGCCTGCTGGAGTGAAATTTTCTGAATCGTCTTTAGAAGAGGAGGAAACCCTTGTGGGGTTGGATGCCATTGGCTTGAGGAAAATGGGGAATGGAAGAAAGAGAGTGGCAGTGAAGAGAATGATGAGGAAATTAGAGATTGCTACCAATGATGATCAGAGAGAAGAAGAACAAGATCAAGAAAGTTCAAGAATTATTTCAGGTGCAAACCACTCTGATAGATCAACATGCAACTTTGAAGATCAAAAGGGAGATCATTTTGGAGTTAGTAGAAAAATGGGTGACAAAAATTGTAAAAAAAGCCTCAATGTTGGTGGGTTTGCAACATTTGGTGCAGATTATAAAGGCCCTTTTCACCATCCTCCTAAACATAAC

Coding sequence (CDS)

ATGAAGAAGAAGATGATGATAATGATCAAAATACCACTCATGAGCTTAGCCATTTGGCTTCTCTTCCTAATCTCTGTCTCCCATGCTCTCCCAGGTATCAATTTTACGATTAGTTTATTCTCGATCTCGAGTTACATTATTCCTCACACCTATCTTATTTTTCGGAAATCTTTGCTTTGGGTAGATAACTCAGACAAACAGTACTTGTCGCCTGCTGGAGTGAAATTTTCTGAATCGTCTTTAGAAGAGGAGGAAACCCTTGTGGGGTTGGATGCCATTGGCTTGAGGAAAATGGGGAATGGAAGAAAGAGAGTGGCAGTGAAGAGAATGATGAGGAAATTAGAGATTGCTACCAATGATGATCAGAGAGAAGAAGAACAAGATCAAGAAAGTTCAAGAATTATTTCAGGTGCAAACCACTCTGATAGATCAACATGCAACTTTGAAGATCAAAAGGGAGATCATTTTGGAGTTAGTAGAAAAATGGGTGACAAAAATTGTAAAAAAAGCCTCAATGTTGGTGGGTTTGCAACATTTGGTGCAGATTATAAAGGCCCTTTTCACCATCCTCCTAAACATAAC

Protein sequence

MKKKMMIMIKIPLMSLAIWLLFLISVSHALPGINFTISLFSISSYIIPHTYLIFRKSLLWVDNSDKQYLSPAGVKFSESSLEEEETLVGLDAIGLRKMGNGRKRVAVKRMMRKLEIATNDDQREEEQDQESSRIISGANHSDRSTCNFEDQKGDHFGVSRKMGDKNCKKSLNVGGFATFGADYKGPFHHPPKHN

Homology

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BLAST of MS014562 vs. NCBI nr
Match: XP_022155069.1 (uncharacterized protein LOC111022203 [Momordica charantia])

HSP 1 Score: 176.4 bits (446), Expect = 2.4e-40
Identity = 111/169 (65.68%), Postives = 115/169 (68.05%), Query Frame = 0


Query: 1   MKKKMMIMIKIPLMSLAIWLLFLISVSHALPGINFTISLFSISSYIIPHTYLIFRKSLLW 60
           MKKKMMIMIKIPLMSLAIWLLFLISVSHALP                             
Sbjct: 1   MKKKMMIMIKIPLMSLAIWLLFLISVSHALP----------------------------- 60

Query: 61  VDNSDKQYLSPAGVKFSESSLEEEETLVGLDAIGLRKMGNGRKRVAVKRMMRKLEIATND 120
            DNSDKQYLSPA VKFSESSLEEEETLVGLDAIGLRKMGNGRKRVAVKRMMRKLEIAT+D
Sbjct: 61  -DNSDKQYLSPAAVKFSESSLEEEETLVGLDAIGLRKMGNGRKRVAVKRMMRKLEIATDD 120

Query: 121 DQREEEQDQESSRIISG-ANHSDRSTCNFEDQKGDHFGVSRKMGDKNCK 169
           DQREEEQDQESSRIISG    S   T   +DQ+       R     + K
Sbjct: 121 DQREEEQDQESSRIISGLKKKSSLQTSQVKDQEPSTINAKRSRNSNHLK 139

[Close]

BLAST of MS014562 vs. NCBI nr
Match: KAG7018189.1 (hypothetical protein SDJN02_20057, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105.9 bits (263), Expect = 3.9e-19
Identity = 69/151 (45.70%), Postives = 94/151 (62.25%), Query Frame = 0


Query: 34  NFTISLFSISSYIIPHTYLIFRKSLLWVDNSDKQYLSPAGVKFSESSLEEEETLVGLDAI 93
           N T   F++  +++  ++ +        D+ D   L+  G +FSESSL++EETLVG DA+
Sbjct: 3   NITTIFFTLPIFLLSLSHAL-------QDHIDAPLLT-IGAQFSESSLQKEETLVGFDAM 62

Query: 94  GLRKMGNGRKRVAVKRMMRKLEIATNDDQREEEQDQESSRIISGANHSDRSTCNFEDQKG 153
            +RKMGNGR RVA+KR+MR+   +T +D+REEE+DQESSRI      S    CN ED+KG
Sbjct: 63  NMRKMGNGRMRVAIKRIMRR--ESTTNDEREEEEDQESSRI------SGVKNCNLEDEKG 122

Query: 154 DHFGVSRKMGDKNCKKSLNVGGFATFGADYK 185
           D FGV      KN  +  NV GF TFG + K
Sbjct: 123 D-FGVGSVKNCKNGGRKRNVAGFVTFGQNTK 136

[Close]

BLAST of MS014562 vs. NCBI nr
Match: KAG6581710.1 (hypothetical protein SDJN03_21712, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.7 bits (226), Expect = 7.7e-15
Identity = 54/94 (57.45%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 73  GVKFSESSLEEEETLVGLDAIGLRKMGNGRKRVAVKRMMRKLEIATNDDQREEEQDQESS 132
           G +FSESSL++EETLVG DA+ +RKMGNGR RVA+KR+MR+   +T +D+REEE+DQESS
Sbjct: 25  GAQFSESSLQKEETLVGFDAMNMRKMGNGRMRVAIKRIMRR--ESTTNDEREEEEDQESS 84

Query: 133 RIISGANHSDRSTCNFEDQKGDHFGVSRKMGDKN 167
           RI      S    CN ED+KGD FGV +     N
Sbjct: 85  RI------SGVKNCNLEDEKGD-FGVGQNTKRSN 109

[Close]

BLAST of MS014562 vs. NCBI nr
Match: XP_011653405.2 (uncharacterized protein LOC105435212 [Cucumis sativus] >KGN53766.1 hypothetical protein Csa_015188 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 6.1e-12
Identity = 63/131 (48.09%), Postives = 80/131 (61.07%), Query Frame = 0


Query: 5   MMIMIKIPLMSLAIWLLFLIS-VSHALPGINFTISLFSISSYIIPHTYLIFRKSLLWVDN 64
           M  M KIP +SL IWLLFLIS +SH+L                          S    D 
Sbjct: 1   MKKMFKIPFLSLTIWLLFLISPLSHSL--------------------------SHALQDY 60

Query: 65  SDKQYLSPAGVKFSESSLEEEETLVGLDAIGLRKMGNGRKRVAVKRMMRKLEIATNDDQR 124
           +D+ +L P G + SESSL+EE+ LVG DAIGLRKMG+GRKRV VKR+++K EI T +D R
Sbjct: 61  TDEPFL-PIGAELSESSLDEEKNLVGFDAIGLRKMGSGRKRVEVKRIVKK-EITTTNDGR 101

Query: 125 EEEQDQESSRI 135
           +E  D+E+SRI
Sbjct: 121 QE--DEENSRI 101

[Close]

BLAST of MS014562 vs. NCBI nr
Match: XP_022956104.1 (uncharacterized protein LOC111457897 isoform X1 [Cucurbita moschata])

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-11
Identity = 53/101 (52.48%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 73  GVKFSESSLEEEETLVGLDAIGLRKMGNGRKRVAVKRMMRKLEIATNDDQREEEQDQESS 132
           G +FSESSL++EETLVG DA+ +RKMGNGR RVA+KR+MR+   +T +D+REEE+DQESS
Sbjct: 34  GAQFSESSLQKEETLVGFDAMNMRKMGNGRMRVAIKRIMRR--ESTTNDEREEEEDQESS 93

Query: 133 RIISGANHSDRSTCNFEDQKGDHFGVSRKMGDKNCKKSLNV 174
           R ISG N + RS    +  + +H   S     KN   S  V
Sbjct: 94  R-ISGQN-TKRSNKLHQTSQLNHQDTSEAKRWKNSSISKRV 130

[Close]

BLAST of MS014562 vs. ExPASy TrEMBL
Match: A0A6J1DP50 (uncharacterized protein LOC111022203 OS=Momordica charantia OX=3673 GN=LOC111022203 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.1e-40
Identity = 111/169 (65.68%), Postives = 115/169 (68.05%), Query Frame = 0


Query: 1   MKKKMMIMIKIPLMSLAIWLLFLISVSHALPGINFTISLFSISSYIIPHTYLIFRKSLLW 60
           MKKKMMIMIKIPLMSLAIWLLFLISVSHALP                             
Sbjct: 1   MKKKMMIMIKIPLMSLAIWLLFLISVSHALP----------------------------- 60

Query: 61  VDNSDKQYLSPAGVKFSESSLEEEETLVGLDAIGLRKMGNGRKRVAVKRMMRKLEIATND 120
            DNSDKQYLSPA VKFSESSLEEEETLVGLDAIGLRKMGNGRKRVAVKRMMRKLEIAT+D
Sbjct: 61  -DNSDKQYLSPAAVKFSESSLEEEETLVGLDAIGLRKMGNGRKRVAVKRMMRKLEIATDD 120

Query: 121 DQREEEQDQESSRIISG-ANHSDRSTCNFEDQKGDHFGVSRKMGDKNCK 169
           DQREEEQDQESSRIISG    S   T   +DQ+       R     + K
Sbjct: 121 DQREEEQDQESSRIISGLKKKSSLQTSQVKDQEPSTINAKRSRNSNHLK 139

[Close]

BLAST of MS014562 vs. ExPASy TrEMBL
Match: A0A0A0L0U7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G124880 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.0e-12
Identity = 63/131 (48.09%), Postives = 80/131 (61.07%), Query Frame = 0


Query: 5   MMIMIKIPLMSLAIWLLFLIS-VSHALPGINFTISLFSISSYIIPHTYLIFRKSLLWVDN 64
           M  M KIP +SL IWLLFLIS +SH+L                          S    D 
Sbjct: 1   MKKMFKIPFLSLTIWLLFLISPLSHSL--------------------------SHALQDY 60

Query: 65  SDKQYLSPAGVKFSESSLEEEETLVGLDAIGLRKMGNGRKRVAVKRMMRKLEIATNDDQR 124
           +D+ +L P G + SESSL+EE+ LVG DAIGLRKMG+GRKRV VKR+++K EI T +D R
Sbjct: 61  TDEPFL-PIGAELSESSLDEEKNLVGFDAIGLRKMGSGRKRVEVKRIVKK-EITTTNDGR 101

Query: 125 EEEQDQESSRI 135
           +E  D+E+SRI
Sbjct: 121 QE--DEENSRI 101

[Close]

BLAST of MS014562 vs. ExPASy TrEMBL
Match: A0A6J1GY35 (uncharacterized protein LOC111457897 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457897 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 8.6e-12
Identity = 53/101 (52.48%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 73  GVKFSESSLEEEETLVGLDAIGLRKMGNGRKRVAVKRMMRKLEIATNDDQREEEQDQESS 132
           G +FSESSL++EETLVG DA+ +RKMGNGR RVA+KR+MR+   +T +D+REEE+DQESS
Sbjct: 34  GAQFSESSLQKEETLVGFDAMNMRKMGNGRMRVAIKRIMRR--ESTTNDEREEEEDQESS 93

Query: 133 RIISGANHSDRSTCNFEDQKGDHFGVSRKMGDKNCKKSLNV 174
           R ISG N + RS    +  + +H   S     KN   S  V
Sbjct: 94  R-ISGQN-TKRSNKLHQTSQLNHQDTSEAKRWKNSSISKRV 130

[Close]

BLAST of MS014562 vs. ExPASy TrEMBL
Match: A0A6J1GWX0 (uncharacterized protein LOC111457897 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457897 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.2e-10
Identity = 52/101 (51.49%), Postives = 68/101 (67.33%), Query Frame = 0


Query: 73  GVKFSESSLEEEETLVGLDAIGLRKMGNGRKRVAVKRMMRKLEIATNDDQREEEQDQESS 132
           G +FSESSL ++ETLVG DA+ +RKMGNGR RVA+KR+MR+   +T +D+REEE+DQESS
Sbjct: 34  GAQFSESSL-QKETLVGFDAMNMRKMGNGRMRVAIKRIMRR--ESTTNDEREEEEDQESS 93

Query: 133 RIISGANHSDRSTCNFEDQKGDHFGVSRKMGDKNCKKSLNV 174
           R ISG N + RS    +  + +H   S     KN   S  V
Sbjct: 94  R-ISGQN-TKRSNKLHQTSQLNHQDTSEAKRWKNSSISKRV 129

[Close]

BLAST of MS014562 vs. ExPASy TrEMBL
Match: A0A5A7UKD7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G00200 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.0e-09
Identity = 62/131 (47.33%), Postives = 77/131 (58.78%), Query Frame = 0


Query: 5   MMIMIKIPLMSLAIWLLFLIS-VSHALPGINFTISLFSISSYIIPHTYLIFRKSLLWVDN 64
           M  M KIP +SL IWLLFLIS +SH+L                          S    D 
Sbjct: 1   MKKMFKIPFLSLTIWLLFLISPLSHSL--------------------------SHALQDY 60

Query: 65  SDKQYLSPAGVKFSESSLEEEETLVGLDAIGLRKMGNGRKRVAVKRMMRKLEIATNDDQR 124
           +D+ +L P G + SESS EEE+ LVG DAIGLRKMG+GRKRV VKR+++K  I T   +R
Sbjct: 61  TDEPFL-PIGGELSESSHEEEKNLVGFDAIGLRKMGSGRKRVEVKRIVKK-GITTPIYER 101

Query: 125 EEEQDQESSRI 135
           +E  D+ESSRI
Sbjct: 121 QE--DEESSRI 101

The following BLAST results are available for this feature:

BLAST of MS014562 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155069.1	2.4e-40	65.68	uncharacterized protein LOC111022203 [Momordica charantia]	[more]
KAG7018189.1	3.9e-19	45.70	hypothetical protein SDJN02_20057, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6581710.1	7.7e-15	57.45	hypothetical protein SDJN03_21712, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_011653405.2	6.1e-12	48.09	uncharacterized protein LOC105435212 [Cucumis sativus] >KGN53766.1 hypothetical ...	[more]
XP_022956104.1	1.8e-11	52.48	uncharacterized protein LOC111457897 isoform X1 [Cucurbita moschata]	[more]

BLAST of MS014562 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS014562 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DP50	1.1e-40	65.68	uncharacterized protein LOC111022203 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A0A0L0U7	3.0e-12	48.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G124880 PE=4 SV=1	[more]
A0A6J1GY35	8.6e-12	52.48	uncharacterized protein LOC111457897 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1GWX0	6.2e-10	51.49	uncharacterized protein LOC111457897 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A5A7UKD7	1.0e-09	47.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MS014562 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 107..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS014562.1	MS014562.1	mRNA