MS014556 (gene) Bitter gourd (TR) v1

Overview


Name	MS014556
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein Ycf2
Location	scaffold553: 841601 .. 841752 (+)
RNA-Seq Expression	MS014556
Synteny	MS014556

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAATCATCCGCTTCTGGAAGAAATCGAAGAATTTCTCGAGAATCCTACAAGATTCATTCTTTCTTTTCTAACAGATGGTCAGAACTTCATCTCGATTCGAATCCTCTTGAGAGGTCCACTAGAGATCAGAAATTGTTGAAATCACAA

mRNA sequence

ATGAATAATCATCCGCTTCTGGAAGAAATCGAAGAATTTCTCGAGAATCCTACAAGATTCTCTTTCTTTTCTAACAGATGGTCAGAACTTCATCTCGATTCGAATCCTCTTGAGAGGTCCACTAGAGATCAGAAATTGTTGAAATCACAA

Coding sequence (CDS)

ATGAATAATCATCCGCTTCTGGAAGAAATCGAAGAATTTCTCGAGAATCCTACAAGATTCTCTTTCTTTTCTAACAGATGGTCAGAACTTCATCTCGATTCGAATCCTCTTGAGAGGTCCACTAGAGATCAGAAATTGTTGAAATCACAA

Protein sequence

MNNHPLLEEIEEFLENPTRFSFFSNRWSELHLDSNPLERSTRDQKLLKSQ

Homology

[Close]

BLAST of MS014556 vs. NCBI nr
Match: YP_009468904.1 (hypothetical chloroplast RF2 [Gynostemma compressum] >YP_009468924.1 hypothetical chloroplast RF2 [Gynostemma compressum] >AVA29805.1 hypothetical chloroplast RF2 [Gynostemma compressum] >AVA29806.1 hypothetical chloroplast RF2 [Gynostemma compressum])

HSP 1 Score: 82.8 bits (203), Expect = 9.2e-13
Identity = 42/52 (80.77%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1   MNNHPLLEEIEEFLENPTRF--SFFSNRWSELHLDSNPLERSTRDQKLLKSQ 51
           MNNHPL EEIEEFL NPTR   SFFS+RWSELHL SNP+ERSTRDQKLLK +
Sbjct: 467 MNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHLGSNPIERSTRDQKLLKKE 518

[Close]

BLAST of MS014556 vs. NCBI nr
Match: AXU40388.1 (hypothetical chloroplast RF2 [Gomphogyne cissiformis var. villosa] >AXU40389.1 hypothetical chloroplast RF2 [Gomphogyne cissiformis var. villosa])

HSP 1 Score: 82.8 bits (203), Expect = 9.2e-13
Identity = 42/52 (80.77%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1   MNNHPLLEEIEEFLENPTRF--SFFSNRWSELHLDSNPLERSTRDQKLLKSQ 51
           MNNHPL EEIEEFL NPTR   SFFS+RWSELHL SNP+ERSTRDQKLLK +
Sbjct: 471 MNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHLGSNPIERSTRDQKLLKKE 522

[Close]

BLAST of MS014556 vs. NCBI nr
Match: YP_009439847.1 (hypothetical chloroplast RF2 [Gynostemma laxiflorum] >YP_009439867.1 hypothetical chloroplast RF2 [Gynostemma laxiflorum] >YP_010015182.1 hypothetical chloroplast RF2 [Gynostemma yixingense] >YP_010015202.1 hypothetical chloroplast RF2 [Gynostemma yixingense] >ATG86627.1 hypothetical chloroplast RF2 [Gynostemma laxiflorum] >ATG86628.1 hypothetical chloroplast RF2 [Gynostemma laxiflorum] >QOI14307.1 hypothetical chloroplast RF2 [Gynostemma yixingense] >QOI14327.1 hypothetical chloroplast RF2 [Gynostemma yixingense])

HSP 1 Score: 82.8 bits (203), Expect = 9.2e-13
Identity = 42/52 (80.77%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1   MNNHPLLEEIEEFLENPTRF--SFFSNRWSELHLDSNPLERSTRDQKLLKSQ 51
           MNNHPL EEIEEFL NPTR   SFFS+RWSELHL SNP+ERSTRDQKLLK +
Sbjct: 467 MNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHLGSNPIERSTRDQKLLKKE 518

[Close]

BLAST of MS014556 vs. NCBI nr
Match: YP_009752726.1 (Ycf2 protein [Ampelosycios humblotii] >QIT05207.1 Ycf2 protein [Ampelosycios humblotii])

HSP 1 Score: 82.8 bits (203), Expect = 9.2e-13
Identity = 42/52 (80.77%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1   MNNHPLLEEIEEFLENPTRF--SFFSNRWSELHLDSNPLERSTRDQKLLKSQ 51
           MNNHPL EEIEEFL NPTR   SFFS+RWSELHL SNP+ERSTRDQKLLK +
Sbjct: 467 MNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHLGSNPIERSTRDQKLLKKE 518

[Close]

BLAST of MS014556 vs. NCBI nr
Match: YP_009753047.1 (Ycf2 protein [Gerrardanthus macrorhizus] >YP_009753065.1 Ycf2 protein [Gerrardanthus macrorhizus] >QIT06119.1 Ycf2 protein [Gerrardanthus macrorhizus] >QIT06137.1 Ycf2 protein [Gerrardanthus macrorhizus])

HSP 1 Score: 82.8 bits (203), Expect = 9.2e-13
Identity = 42/52 (80.77%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1   MNNHPLLEEIEEFLENPTRF--SFFSNRWSELHLDSNPLERSTRDQKLLKSQ 51
           MNNHPL EEIEEFL NPTR   SFFS+RWSELHL SNP+ERSTRDQKLLK +
Sbjct: 467 MNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHLGSNPIERSTRDQKLLKKE 518

[Close]

BLAST of MS014556 vs. ExPASy Swiss-Prot
Match: A6MM80 (Protein Ycf2 OS=Buxus microphylla OX=153571 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.7e-14
Identity = 42/52 (80.77%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 1   MNNHPLLEEIEEFLENPTRF--SFFSNRWSELHLDSNPLERSTRDQKLLKSQ 51
           MNNH L EEIEEFL NPTR   SFFS+RWSELHL SNP ERSTRDQKLLK Q
Sbjct: 473 MNNHLLPEEIEEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQ 524

[Close]

BLAST of MS014556 vs. ExPASy Swiss-Prot
Match: Q0G9F7 (Protein Ycf2 OS=Liriodendron tulipifera OX=3415 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.7e-14
Identity = 42/52 (80.77%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 1   MNNHPLLEEIEEFLENPTRF--SFFSNRWSELHLDSNPLERSTRDQKLLKSQ 51
           MNNH L EEIEEFL NPTR   SFFS+RWSELHL SNP ERSTRDQKLLK Q
Sbjct: 472 MNNHLLPEEIEEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQ 523

[Close]

BLAST of MS014556 vs. ExPASy Swiss-Prot
Match: Q09FY5 (Protein Ycf2 OS=Platanus occidentalis OX=4403 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.7e-14
Identity = 42/52 (80.77%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 1   MNNHPLLEEIEEFLENPTRF--SFFSNRWSELHLDSNPLERSTRDQKLLKSQ 51
           MNNH L EEIEEFL NPTR   SFFS+RWSELHL SNP ERSTRDQKLLK Q
Sbjct: 473 MNNHLLPEEIEEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKQ 524

[Close]

BLAST of MS014556 vs. ExPASy Swiss-Prot
Match: Q2L949 (Protein Ycf2 OS=Gossypium hirsutum OX=3635 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.9e-14
Identity = 41/52 (78.85%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 1   MNNHPLLEEIEEFLENPTRF--SFFSNRWSELHLDSNPLERSTRDQKLLKSQ 51
           MNNH L EEIEEFL NPTR   SFFS+RWSELHL SNP ERSTRDQKLLK +
Sbjct: 471 MNNHLLPEEIEEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKE 522

[Close]

BLAST of MS014556 vs. ExPASy Swiss-Prot
Match: Q14F97 (Protein Ycf2 OS=Populus alba OX=43335 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.9e-14
Identity = 41/52 (78.85%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 1   MNNHPLLEEIEEFLENPTRF--SFFSNRWSELHLDSNPLERSTRDQKLLKSQ 51
           MNNH L EEIEEFL NPTR   SFFS+RWSELHL SNP ERSTRDQKLLK +
Sbjct: 471 MNNHLLPEEIEEFLGNPTRSIRSFFSDRWSELHLGSNPTERSTRDQKLLKKE 522

[Close]

BLAST of MS014556 vs. ExPASy TrEMBL
Match: A0A346TLZ9 (Protein Ycf2 OS=Gomphogyne cissiformis var. villosa OX=2315457 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.5e-13
Identity = 42/52 (80.77%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1   MNNHPLLEEIEEFLENPTRF--SFFSNRWSELHLDSNPLERSTRDQKLLKSQ 51
           MNNHPL EEIEEFL NPTR   SFFS+RWSELHL SNP+ERSTRDQKLLK +
Sbjct: 471 MNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHLGSNPIERSTRDQKLLKKE 522

[Close]

BLAST of MS014556 vs. ExPASy TrEMBL
Match: A0A6H0EWH7 (Protein Ycf2 OS=Gerrardanthus macrorhizus OX=386173 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.5e-13
Identity = 42/52 (80.77%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1   MNNHPLLEEIEEFLENPTRF--SFFSNRWSELHLDSNPLERSTRDQKLLKSQ 51
           MNNHPL EEIEEFL NPTR   SFFS+RWSELHL SNP+ERSTRDQKLLK +
Sbjct: 467 MNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHLGSNPIERSTRDQKLLKKE 518

[Close]

BLAST of MS014556 vs. ExPASy TrEMBL
Match: A0A191T4A7 (Protein Ycf2 OS=Gynostemma pentaphyllum OX=182084 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.5e-13
Identity = 42/52 (80.77%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1   MNNHPLLEEIEEFLENPTRF--SFFSNRWSELHLDSNPLERSTRDQKLLKSQ 51
           MNNHPL EEIEEFL NPTR   SFFS+RWSELHL SNP+ERSTRDQKLLK +
Sbjct: 467 MNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHLGSNPIERSTRDQKLLKKE 518

[Close]

BLAST of MS014556 vs. ExPASy TrEMBL
Match: A0A291IAJ3 (Protein Ycf2 OS=Gynostemma caulopterum OX=1592219 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.5e-13
Identity = 42/52 (80.77%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1   MNNHPLLEEIEEFLENPTRF--SFFSNRWSELHLDSNPLERSTRDQKLLKSQ 51
           MNNHPL EEIEEFL NPTR   SFFS+RWSELHL SNP+ERSTRDQKLLK +
Sbjct: 467 MNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHLGSNPIERSTRDQKLLKKE 518

[Close]

BLAST of MS014556 vs. ExPASy TrEMBL
Match: A0A286QM47 (Protein Ycf2 OS=Gynostemma pentaphyllum OX=182084 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.5e-13
Identity = 42/52 (80.77%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1   MNNHPLLEEIEEFLENPTRF--SFFSNRWSELHLDSNPLERSTRDQKLLKSQ 51
           MNNHPL EEIEEFL NPTR   SFFS+RWSELHL SNP+ERSTRDQKLLK +
Sbjct: 467 MNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHLGSNPIERSTRDQKLLKKE 518

[Close]

BLAST of MS014556 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 75.5 bits (184), Expect = 1.4e-14
Identity = 40/52 (76.92%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 1   MNNHPLLEEIEEFLENPTRF--SFFSNRWSELHLDSNPLERSTRDQKLLKSQ 51
           MNNH L EE EEFL NPTR   SFFS+RWSELHL SNP ERSTRDQKLLK +
Sbjct: 473 MNNHLLPEESEEFLGNPTRAIRSFFSDRWSELHLGSNPTERSTRDQKLLKKE 524

[Close]

BLAST of MS014556 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 75.5 bits (184), Expect = 1.4e-14
Identity = 40/52 (76.92%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 1   MNNHPLLEEIEEFLENPTRF--SFFSNRWSELHLDSNPLERSTRDQKLLKSQ 51
           MNNH L EE EEFL NPTR   SFFS+RWSELHL SNP ERSTRDQKLLK +
Sbjct: 473 MNNHLLPEESEEFLGNPTRAIRSFFSDRWSELHLGSNPTERSTRDQKLLKKE 524

The following BLAST results are available for this feature:

BLAST of MS014556 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009468904.1	9.2e-13	80.77	hypothetical chloroplast RF2 [Gynostemma compressum] >YP_009468924.1 hypothetica...	[more]
AXU40388.1	9.2e-13	80.77	hypothetical chloroplast RF2 [Gomphogyne cissiformis var. villosa] >AXU40389.1 h...	[more]
YP_009439847.1	9.2e-13	80.77	hypothetical chloroplast RF2 [Gynostemma laxiflorum] >YP_009439867.1 hypothetica...	[more]
YP_009752726.1	9.2e-13	80.77	Ycf2 protein [Ampelosycios humblotii] >QIT05207.1 Ycf2 protein [Ampelosycios hum...	[more]
YP_009753047.1	9.2e-13	80.77	Ycf2 protein [Gerrardanthus macrorhizus] >YP_009753065.1 Ycf2 protein [Gerrardan...	[more]

BLAST of MS014556 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A6MM80	1.7e-14	80.77	Protein Ycf2 OS=Buxus microphylla OX=153571 GN=ycf2-A PE=3 SV=1	[more]
Q0G9F7	1.7e-14	80.77	Protein Ycf2 OS=Liriodendron tulipifera OX=3415 GN=ycf2-A PE=3 SV=1	[more]
Q09FY5	1.7e-14	80.77	Protein Ycf2 OS=Platanus occidentalis OX=4403 GN=ycf2-A PE=3 SV=1	[more]
Q2L949	3.9e-14	78.85	Protein Ycf2 OS=Gossypium hirsutum OX=3635 GN=ycf2-A PE=3 SV=1	[more]
Q14F97	3.9e-14	78.85	Protein Ycf2 OS=Populus alba OX=43335 GN=ycf2-A PE=3 SV=1	[more]

BLAST of MS014556 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A346TLZ9	4.5e-13	80.77	Protein Ycf2 OS=Gomphogyne cissiformis var. villosa OX=2315457 GN=ycf2 PE=3 SV=1	[more]
A0A6H0EWH7	4.5e-13	80.77	Protein Ycf2 OS=Gerrardanthus macrorhizus OX=386173 GN=ycf2 PE=3 SV=1	[more]
A0A191T4A7	4.5e-13	80.77	Protein Ycf2 OS=Gynostemma pentaphyllum OX=182084 GN=ycf2 PE=3 SV=1	[more]
A0A291IAJ3	4.5e-13	80.77	Protein Ycf2 OS=Gynostemma caulopterum OX=1592219 GN=ycf2 PE=3 SV=1	[more]
A0A286QM47	4.5e-13	80.77	Protein Ycf2 OS=Gynostemma pentaphyllum OX=182084 GN=ycf2 PE=3 SV=1	[more]

BLAST of MS014556 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00860.1	1.4e-14	76.92	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	1.4e-14	76.92	Chloroplast Ycf2;ATPase, AAA type, core	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008543	Uncharacterised protein family Ycf2	PFAM	PF05695	DUF825	coord: 1..50 e-value: 1.6E-18 score: 65.4
None	No IPR available	PANTHER	PTHR33078:SF39	BNAA06G19300D PROTEIN	coord: 1..50
None	No IPR available	PANTHER	PTHR33078	PROTEIN YCF2-RELATED	coord: 1..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS014556.1	MS014556.1	mRNA