MS014553 (gene) Bitter gourd (TR) v1

Overview


Name	MS014553
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	NADH-quinone oxidoreductase protein
Location	scaffold553: 821243 .. 821455 (+)
RNA-Seq Expression	MS014553
Synteny	MS014553

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTGTGGTTGCGAGCTGGAGCTGCCATAGCTTATGGCTAGAGCCATGGGGGGCCCCAGCAGAGAGAACAGTAAGGATAACGAGCGTGGAGCCCGCCAAACGGGCGGCAGGAGCAGCGGGCAAGTGCTTGGTAGGCCAACAGCTCAGTGAACCGGGCGGGGCACTCGACGAAAGGGGGCACACTGAGCAAGTACGAGAAATTGGCCCCGCTCCG

mRNA sequence

TCTGTGGTTGCGAGCTGGAGCTGCCATAGCTTATGGCTAGAGCCATGGGGGGCCCCAGCAGAGAGAACAGTAAGGATAACGAGCGTGGAGCCCGCCAAACGGGCGGCAGGAGCAGCGGGCAAGTGCTTGGTAGGCCAACAGCTCAGTGAACCGGGCGGGGCACTCGACGAAAGGGGGCACACTGAGCAAGTACGAGAAATTGGCCCCGCTCCG

Coding sequence (CDS)

TCTGTGGTTGCGAGCTGGAGCTGCCATAGCTTATGGCTAGAGCCATGGGGGGCCCCAGCAGAGAGAACAGTAAGGATAACGAGCGTGGAGCCCGCCAAACGGGCGGCAGGAGCAGCGGGCAAGTGCTTGGTAGGCCAACAGCTCAGTGAACCGGGCGGGGCACTCGACGAAAGGGGGCACACTGAGCAAGTACGAGAAATTGGCCCCGCTCCG

Protein sequence

SVVASWSCHSLWLEPWGAPAERTVRITSVEPAKRAAGAAGKCLVGQQLSEPGGALDERGHTEQVREIGPAP

Homology

[Close]

BLAST of MS014553 vs. NCBI nr
Match: KZN05980.1 (hypothetical protein DCAR_006817 [Daucus carota subsp. sativus])

HSP 1 Score: 96.7 bits (239), Expect = 8.8e-17
Identity = 49/55 (89.09%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 17 GAPAERTVRITSVEPAKRAAGAAGKCLVGQQLSEPGGALDERGHTEQVREIGPAP 72
          GAPAE  VRIT   PAKRAAGAAGKCLVGQQ SEPGGALDERGHTEQVREIGPAP
Sbjct: 7  GAPAEIKVRITRAPPAKRAAGAAGKCLVGQQPSEPGGALDERGHTEQVREIGPAP 61

[Close]

BLAST of MS014553 vs. NCBI nr
Match: RWR98287.1 (NADH-quinone oxidoreductase protein [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 92.4 bits (228), Expect = 1.7e-15
Identity = 48/59 (81.36%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 2   VVASWSCHSLWLEPW-GAPAERTVRITSVEPAKRAAGAAGKCLVGQQLSEPGGALDERG 60
           V ASWSCHSLWLE W GAPA+RTVRITS  PA R A AAGKCLVGQQ SE GGALDERG
Sbjct: 105 VGASWSCHSLWLEQWEGAPAKRTVRITSAPPAWRLARAAGKCLVGQQPSESGGALDERG 163

[Close]

BLAST of MS014553 vs. NCBI nr
Match: ESQ43401.1 (hypothetical protein EUTSA_v10015055mg [Eutrema salsugineum])

HSP 1 Score: 89.0 bits (219), Expect = 1.8e-14
Identity = 50/74 (67.57%), Postives = 53/74 (71.62%), Query Frame = 0


Query: 2  VVASWSCHSLWLEPWGAPAE----RTVRITSVEPAKRAAGAAGKCLVGQQLSEPGGALDE 61
          +VAS SCHSLWLE W  P +    RTVRITS  P KRAAGAAGK LVGQQ S   G   +
Sbjct: 1  MVASRSCHSLWLEQWEGPQQREQNRTVRITSAPPVKRAAGAAGKYLVGQQSS---GHSTK 60

Query: 62 RGHTEQVREIGPAP 72
           GHTEQVREIGPAP
Sbjct: 61 GGHTEQVREIGPAP 71

[Close]

BLAST of MS014553 vs. NCBI nr
Match: ERM95896.1 (hypothetical protein AMTR_s00060p00157590 [Amborella trichopoda])

HSP 1 Score: 70.9 bits (172), Expect = 5.1e-09
Identity = 36/40 (90.00%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 20 AERTVRITSVEPAKRAAGAAGKCLVGQQLSEPGGALDERG 60
          AERTVRITS  PAKR AGAAGKCLVGQQ SEPGGALDERG
Sbjct: 8  AERTVRITSAPPAKRPAGAAGKCLVGQQPSEPGGALDERG 47

[Close]

BLAST of MS014553 vs. NCBI nr
Match: VDD65114.1 (unnamed protein product, partial [Brassica oleracea])

HSP 1 Score: 65.9 bits (159), Expect = 1.7e-07
Identity = 37/50 (74.00%), Postives = 38/50 (76.00%), Query Frame = 0


Query: 22 RTVRITSVEPAKRAAGAAGKCLVGQQLSEPGGALDERGHTEQVREIGPAP 72
          RTVRITS  P KRAAGAAGK LVGQQ S   G   + GHTEQVREIGPAP
Sbjct: 7  RTVRITSAPPVKRAAGAAGKYLVGQQSS---GHSTKGGHTEQVREIGPAP 53

[Close]

BLAST of MS014553 vs. ExPASy TrEMBL
Match: A0A166E1Y5 (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006817 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 4.2e-17
Identity = 49/55 (89.09%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 17 GAPAERTVRITSVEPAKRAAGAAGKCLVGQQLSEPGGALDERGHTEQVREIGPAP 72
          GAPAE  VRIT   PAKRAAGAAGKCLVGQQ SEPGGALDERGHTEQVREIGPAP
Sbjct: 7  GAPAEIKVRITRAPPAKRAAGAAGKCLVGQQPSEPGGALDERGHTEQVREIGPAP 61

[Close]

BLAST of MS014553 vs. ExPASy TrEMBL
Match: A0A3S4Q392 (NADH-quinone oxidoreductase protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02781700 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 8.0e-16
Identity = 48/59 (81.36%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 2   VVASWSCHSLWLEPW-GAPAERTVRITSVEPAKRAAGAAGKCLVGQQLSEPGGALDERG 60
           V ASWSCHSLWLE W GAPA+RTVRITS  PA R A AAGKCLVGQQ SE GGALDERG
Sbjct: 105 VGASWSCHSLWLEQWEGAPAKRTVRITSAPPAWRLARAAGKCLVGQQPSESGGALDERG 163

[Close]

BLAST of MS014553 vs. ExPASy TrEMBL
Match: V4NBU0 (Uncharacterized protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10015055mg PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 8.8e-15
Identity = 50/74 (67.57%), Postives = 53/74 (71.62%), Query Frame = 0


Query: 2  VVASWSCHSLWLEPWGAPAE----RTVRITSVEPAKRAAGAAGKCLVGQQLSEPGGALDE 61
          +VAS SCHSLWLE W  P +    RTVRITS  P KRAAGAAGK LVGQQ S   G   +
Sbjct: 1  MVASRSCHSLWLEQWEGPQQREQNRTVRITSAPPVKRAAGAAGKYLVGQQSS---GHSTK 60

Query: 62 RGHTEQVREIGPAP 72
           GHTEQVREIGPAP
Sbjct: 61 GGHTEQVREIGPAP 71

[Close]

BLAST of MS014553 vs. ExPASy TrEMBL
Match: W1NKA0 (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00060p00157590 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.5e-09
Identity = 36/40 (90.00%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 20 AERTVRITSVEPAKRAAGAAGKCLVGQQLSEPGGALDERG 60
          AERTVRITS  PAKR AGAAGKCLVGQQ SEPGGALDERG
Sbjct: 8  AERTVRITSAPPAKRPAGAAGKCLVGQQPSEPGGALDERG 47

[Close]

BLAST of MS014553 vs. ExPASy TrEMBL
Match: A0A3P6H4Q7 (Uncharacterized protein (Fragment) OS=Brassica oleracea OX=3712 GN=BOLSC28T60342H PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 8.0e-08
Identity = 37/50 (74.00%), Postives = 38/50 (76.00%), Query Frame = 0


Query: 22 RTVRITSVEPAKRAAGAAGKCLVGQQLSEPGGALDERGHTEQVREIGPAP 72
          RTVRITS  P KRAAGAAGK LVGQQ S   G   + GHTEQVREIGPAP
Sbjct: 7  RTVRITSAPPVKRAAGAAGKYLVGQQSS---GHSTKGGHTEQVREIGPAP 53

The following BLAST results are available for this feature:

BLAST of MS014553 vs. NCBI nr


Match Name	E-value	Identity	Description
KZN05980.1	8.8e-17	89.09	hypothetical protein DCAR_006817 [Daucus carota subsp. sativus]	[more]
RWR98287.1	1.7e-15	81.36	NADH-quinone oxidoreductase protein [Cinnamomum micranthum f. kanehirae]	[more]
ESQ43401.1	1.8e-14	67.57	hypothetical protein EUTSA_v10015055mg [Eutrema salsugineum]	[more]
ERM95896.1	5.1e-09	90.00	hypothetical protein AMTR_s00060p00157590 [Amborella trichopoda]	[more]
VDD65114.1	1.7e-07	74.00	unnamed protein product, partial [Brassica oleracea]	[more]

BLAST of MS014553 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS014553 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A166E1Y5	4.2e-17	89.09	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006817 ...	[more]
A0A3S4Q392	8.0e-16	81.36	NADH-quinone oxidoreductase protein OS=Cinnamomum micranthum f. kanehirae OX=337...	[more]
V4NBU0	8.8e-15	67.57	Uncharacterized protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10015055mg PE=...	[more]
W1NKA0	2.5e-09	90.00	Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00060p00157590...	[more]
A0A3P6H4Q7	8.0e-08	74.00	Uncharacterized protein (Fragment) OS=Brassica oleracea OX=3712 GN=BOLSC28T60342...	[more]

BLAST of MS014553 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS014553.1	MS014553.1	mRNA