MS014551 (gene) Bitter gourd (TR) v1

Overview


Name	MS014551
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Ribosomal protein S14
Location	scaffold553: 819268 .. 819366 (-)
RNA-Seq Expression	MS014551
Synteny	MS014551

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGATCCAAACATCGTGAGAAGTTGTCCAAGTTGCCAAGAAAGAATTCCTTTGCACGAGTAAGAAACCTATGTATTTCCACGGGTCGCCTTCGTGGAGTA

mRNA sequence

AGATCCAAACATCGTGAGAAGTTGTCCAAGTTGCCAAGAAAGAATTCCTTTGCACGAGTAAGAAACCTATGTATTTCCACGGGTCGCCTTCGTGGAGTA

Coding sequence (CDS)

AGATCCAAACATCGTGAGAAGTTGTCCAAGTTGCCAAGAAAGAATTCCTTTGCACGAGTAAGAAACCTATGTATTTCCACGGGTCGCCTTCGTGGAGTA

Protein sequence

RSKHREKLSKLPRKNSFARVRNLCISTGRLRGV

Homology

[Close]

BLAST of MS014551 vs. NCBI nr
Match: XP_020595902.1 (uncharacterized protein LOC110035908 [Phalaenopsis equestris])

HSP 1 Score: 55.8 bits (133), Expect = 8.0e-05
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 1  RSKHREKLSKLPRKNSFARVRNLCISTGRLRGV 34
          R KHR KLSKLPRK+SFARVRN CISTGR RG+
Sbjct: 60 RDKHRSKLSKLPRKSSFARVRNRCISTGRPRGI 92

[Close]

BLAST of MS014551 vs. NCBI nr
Match: AVL84883.1 (ribosomal protein S14 [Gastrodia elata])

HSP 1 Score: 53.9 bits (128), Expect = 3.0e-04
Identity = 27/33 (81.82%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 1  RSKHREKLSKLPRKNSFARVRNLCISTGRLRGV 34
          R KHR KLSKLPRK+SFARVRN CISTGR R V
Sbjct: 40 RDKHRSKLSKLPRKSSFARVRNRCISTGRPRSV 72

[Close]

BLAST of MS014551 vs. NCBI nr
Match: QRG30068.1 (ribosomal protein S14 [Phalaenopsis aphrodite subsp. formosana])

HSP 1 Score: 53.5 bits (127), Expect = 3.9e-04
Identity = 26/33 (78.79%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 1  RSKHREKLSKLPRKNSFARVRNLCISTGRLRGV 34
          R KHR KLSKLPRK+SFARVRN CI TGR RG+
Sbjct: 60 RDKHRSKLSKLPRKSSFARVRNRCIFTGRPRGI 92

[Close]

BLAST of MS014551 vs. NCBI nr
Match: YP_002608213.1 (ribosomal protein S14 [Carica papaya] >ACB20502.1 ribosomal protein S14 [Carica papaya] >QWQ55717.1 ribosomal protein S14 [Erythropalum scandens])

HSP 1 Score: 53.1 bits (126), Expect = 5.2e-04
Identity = 27/33 (81.82%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 1  RSKHREKLSKLPRKNSFARVRNLCISTGRLRGV 34
          R KHR KLSKLPRK+SFARVRN CISTGR R V
Sbjct: 40 RDKHRYKLSKLPRKSSFARVRNRCISTGRPRSV 72

[Close]

BLAST of MS014551 vs. NCBI nr
Match: YP_009867105.1 (ribosomal protein S14 [Rotheca serrata] >QKG04084.1 ribosomal protein S14 [Rotheca serrata])

HSP 1 Score: 53.1 bits (126), Expect = 5.2e-04
Identity = 27/33 (81.82%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 1  RSKHREKLSKLPRKNSFARVRNLCISTGRLRGV 34
          R KHR KLSKLPRK+SFARVRN CISTGR R V
Sbjct: 60 RDKHRYKLSKLPRKSSFARVRNRCISTGRPRSV 92

[Close]

BLAST of MS014551 vs. ExPASy Swiss-Prot
Match: P49387 (Ribosomal protein S14, mitochondrial OS=Brassica napus OX=3708 GN=RPS14 PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.6e-06
Identity = 26/33 (78.79%), Postives = 27/33 (81.82%), Query Frame = 0


Query: 1  RSKHREKLSKLPRKNSFARVRNLCISTGRLRGV 34
          R KHR KLSKLPR +SFARVRN CISTGR R V
Sbjct: 40 RDKHRYKLSKLPRNSSFARVRNRCISTGRPRSV 72

[Close]

BLAST of MS014551 vs. ExPASy Swiss-Prot
Match: P14875 (Ribosomal protein S14, mitochondrial OS=Oenothera berteroana OX=3950 GN=RPS14 PE=3 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 2.6e-06
Identity = 26/33 (78.79%), Postives = 27/33 (81.82%), Query Frame = 0


Query: 1  RSKHREKLSKLPRKNSFARVRNLCISTGRLRGV 34
          R KHR KLSKLPR +SFARVRN CISTGR R V
Sbjct: 39 RDKHRYKLSKLPRNSSFARVRNRCISTGRPRSV 71

[Close]

BLAST of MS014551 vs. ExPASy Swiss-Prot
Match: P05716 (Ribosomal protein S14, mitochondrial OS=Vicia faba OX=3906 GN=RPS14 PE=3 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 4.8e-05
Identity = 25/33 (75.76%), Postives = 26/33 (78.79%), Query Frame = 0


Query: 1  RSKHREKLSKLPRKNSFARVRNLCISTGRLRGV 34
          R K R KLSKLPR +SFARVRN CISTGR R V
Sbjct: 40 RDKLRYKLSKLPRNSSFARVRNRCISTGRPRSV 72

[Close]

BLAST of MS014551 vs. ExPASy TrEMBL
Match: A0A2P1EF81 (Ribosomal protein S14 OS=Gastrodia elata OX=91201 GN=rps14 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.5e-04
Identity = 27/33 (81.82%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 1  RSKHREKLSKLPRKNSFARVRNLCISTGRLRGV 34
          R KHR KLSKLPRK+SFARVRN CISTGR R V
Sbjct: 40 RDKHRSKLSKLPRKSSFARVRNRCISTGRPRSV 72

[Close]

BLAST of MS014551 vs. ExPASy TrEMBL
Match: A0A7L8ZUT2 (Ribosomal protein S14 OS=Malania oleifera OX=397392 GN=rps14 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.5e-04
Identity = 27/33 (81.82%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 1  RSKHREKLSKLPRKNSFARVRNLCISTGRLRGV 34
          R KHR KLSKLPRK+SFARVRN CISTGR R V
Sbjct: 40 RDKHRYKLSKLPRKSSFARVRNRCISTGRPRSV 72

[Close]

BLAST of MS014551 vs. ExPASy TrEMBL
Match: A0A6M3R338 (Ribosomal protein subunit S14 OS=Adenocalymma calcareum OX=2099409 GN=rps14 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.5e-04
Identity = 27/33 (81.82%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 1  RSKHREKLSKLPRKNSFARVRNLCISTGRLRGV 34
          R KHR KLSKLPRK+SFARVRN CISTGR R V
Sbjct: 40 RDKHRYKLSKLPRKSSFARVRNRCISTGRPRSV 72

[Close]

BLAST of MS014551 vs. ExPASy TrEMBL
Match: B9U3N2 (Ribosomal protein S14 OS=Carica papaya OX=3649 GN=rps14 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.5e-04
Identity = 27/33 (81.82%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 1  RSKHREKLSKLPRKNSFARVRNLCISTGRLRGV 34
          R KHR KLSKLPRK+SFARVRN CISTGR R V
Sbjct: 40 RDKHRYKLSKLPRKSSFARVRNRCISTGRPRSV 72

[Close]

BLAST of MS014551 vs. ExPASy TrEMBL
Match: A0A6M3R320 (Ribosomal protein subunit S14 OS=Adenocalymma apurense OX=2099408 GN=rps14 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.5e-04
Identity = 27/33 (81.82%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 1  RSKHREKLSKLPRKNSFARVRNLCISTGRLRGV 34
          R KHR KLSKLPRK+SFARVRN CISTGR R V
Sbjct: 40 RDKHRYKLSKLPRKSSFARVRNRCISTGRPRSV 72

[Close]

BLAST of MS014551 vs. TAIR 10
Match: AT2G34520.1 (mitochondrial ribosomal protein S14 )

HSP 1 Score: 44.7 bits (104), Expect = 1.7e-05
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 0


Query: 1   RSKHREKLSKLPRKNSFARVRNLCISTGRLRGV 34
           R K+R KLSKLPR ++FAR+RN C+ TGR R V
Sbjct: 104 RDKNRYKLSKLPRNSAFARIRNRCVFTGRSRSV 136

The following BLAST results are available for this feature:

BLAST of MS014551 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_020595902.1	8.0e-05	81.82	uncharacterized protein LOC110035908 [Phalaenopsis equestris]	[more]
AVL84883.1	3.0e-04	81.82	ribosomal protein S14 [Gastrodia elata]	[more]
QRG30068.1	3.9e-04	78.79	ribosomal protein S14 [Phalaenopsis aphrodite subsp. formosana]	[more]
YP_002608213.1	5.2e-04	81.82	ribosomal protein S14 [Carica papaya] >ACB20502.1 ribosomal protein S14 [Carica ...	[more]
YP_009867105.1	5.2e-04	81.82	ribosomal protein S14 [Rotheca serrata] >QKG04084.1 ribosomal protein S14 [Rothe...	[more]

BLAST of MS014551 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49387	2.6e-06	78.79	Ribosomal protein S14, mitochondrial OS=Brassica napus OX=3708 GN=RPS14 PE=3 SV=...	[more]
P14875	2.6e-06	78.79	Ribosomal protein S14, mitochondrial OS=Oenothera berteroana OX=3950 GN=RPS14 PE...	[more]
P05716	4.8e-05	75.76	Ribosomal protein S14, mitochondrial OS=Vicia faba OX=3906 GN=RPS14 PE=3 SV=2	[more]

BLAST of MS014551 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P1EF81	1.5e-04	81.82	Ribosomal protein S14 OS=Gastrodia elata OX=91201 GN=rps14 PE=3 SV=1	[more]
A0A7L8ZUT2	2.5e-04	81.82	Ribosomal protein S14 OS=Malania oleifera OX=397392 GN=rps14 PE=3 SV=1	[more]
A0A6M3R338	2.5e-04	81.82	Ribosomal protein subunit S14 OS=Adenocalymma calcareum OX=2099409 GN=rps14 PE=3...	[more]
B9U3N2	2.5e-04	81.82	Ribosomal protein S14 OS=Carica papaya OX=3649 GN=rps14 PE=3 SV=1	[more]
A0A6M3R320	2.5e-04	81.82	Ribosomal protein subunit S14 OS=Adenocalymma apurense OX=2099408 GN=rps14 PE=3 ...	[more]

BLAST of MS014551 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34520.1	1.7e-05	63.64	mitochondrial ribosomal protein S14	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001209	Ribosomal protein S14	PFAM	PF00253	Ribosomal_S14	coord: 7..33 e-value: 1.0E-5 score: 25.1
None	No IPR available	GENE3D	1.10.287.1480		coord: 1..33 e-value: 3.6E-7 score: 32.4
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 3..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS014551.1	MS014551.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome