MS014519 (gene) Bitter gourd (TR) v1

Overview


Name	MS014519
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Sister chromatid cohesion protein
Location	scaffold553: 570527 .. 572975 (-)
RNA-Seq Expression	MS014519
Synteny	MS014519

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCTCTGCCGGCGGCTCCGGCTCCGGCTCCGGCTCCGGCTCCGGCCACCGCGGCATCGGCCTCTCCAATACTATTCACTCAGAGGTTGCTCCCTGCCTCCCCTTGCCTTCGCTTCCGGTCTTCTTTGGCGCCTCCGAGCAAGAGCTCAGGCTATTCGATGAGCCGCCCGGGAGCTATGCTACTTCCACCAATGATGTTCTCGCTCAGTCCAAAAAGATCGCTGATCTGCTTCGGGCGACTGACGTCTCTTACTTGTGAGTTGTTTCTTACTTATTTATTTAATTTTTTTCAGCTGAATTCTGGTAGTTAGAATTTAGTACTTCGGATTAGTTGACTGAATTTCCGTTCAGTTGACTGAATTTCTGTTCAGTCGTATTGGTTTCTGGCTTTGGCAGAGTTACTATTTCTGTTTTTTTTTTTGACCGTTGATTGATGAGTATATCTCGCGATTTCTTATAATTCGGTAATGCAATACAACTAGTGTTTCGCTTAGAGTTTAAGTCATTGTTGAGGTTGAAAATATAGGATGTGTACGAATGGCAGCATTTATGGTCTGACAATTTCGAAATTGAACCGCGTACAGTATGAGCAATAGTAACTAACAAATTTGGATTAGTGAAGTCAACGCGGTAACTGTTTGGAGTTCATCCGTACTCTACTAGTTTTACTAAGTAGTAGTTGATTCTATAGTAGAGTTCTAGCTAATTAATCACGGGAGATTTACTGCGTGCCTAGCGCAGAATGCTCCTTTCAGATGACTCATGCATGCCATGGTGTTTTCTTTATCATTTCCCGCACCAAATTGAGATATTGCCAAGTCTCTGAATCTTTCATAGTTATTTGATATTGGTAAAGTAACTAGAGTTTGCATGCTGTGCATTTCTTTCCTGATTTTTTTTTTTTTTTTTTTGCTTTTTCACTTGGACGTGATCAACAGAAATCTAAGAGAAGATGCTGAGGCTCTTTCAGAAGGGTCTGTGGAGCCTTTTGAACTCTATAAGGAAGTTCTTCGCTATGATGCTGATGCCTTCAATTATACTGCTCCAGGTAAACGAAGTCTTGAAATGTTTCTCTCCACTATTTAATGGAAATATAAGTGAGTTATCTTACCTGTATTTTGTCATATTTCGAAACCGTGAAGGTACTATTTTGAGTGACACAAACCATCTTATTTCATTTCTCTAGGTCCAAAGTAATGACAAAGCTTTTAAAACTGTTATTATGCGCAAAGTTGGTGTAGAATTATTACTTCTTGTAATGCACAAATAGCTCCATAAGTCAAGTTCATGTTGGTTGTAGTAACTCATATTACGAGGGGAAACTTTGTGCAGGGTTCCACGGTTTTTACATTTTTTATTACAAAAAAAAAAACTGGGAGCTAGGAAGCGTTGATATCATACTTTAGTAGAATATTAATGTTTGAGGTGCACCAGGAATTGGAAAGTTCAACCTTTTTTTTTATGACTATTATGTTTGTGCATTATGGTCTTGCAGGGATAGCCATGTTAAGGGATACTATTGGGAAAAAAGTTATGAATAATTATGAAAATAGAGAAGTGAGAATGAAAAGGATTTTAATGCTGCGTCAGATAGAAATATGCAATTTGCTCCATTATCATTATATACCTTTTTTTTTTTTTTAGATTTTGTTTTATCTGGATGACTTATATTATTTTTCCGAAGTCAATCATTTATTTTTGAACTTACTGTCTATTGTGCTGTTCAAGTTTCTCAGGTCCTATTATGGAGCATGTCTCTAGCAGTACAGTATCTGATAGGAAAGTATTTGAGCAAAAACTACCTATTAGAAGTAAAGATGAAGGAGACTGCAGAATAAATCAAAATCAAAAGCATAAGCTTGAATCTATTCAAACTAATGTATGCAAGCATTAGAGTTTCCAGTTTCTTTCTTTTGTTACTTGTGCTTCGCTAATCCAGGCAATAAACATTGACAGGATGCACCAATATCATCTTCTAGAAAAGTCAAAGTAAAGAAGAAAGGCAGAGATGAAACGTCTTCTGTTAGAACAGATTCTTCTGAGCTTCAAGGTTGTTCTAGTTGTTCCTTGAGCTAATGAAAGCTGCACTGTATTTTACCTCACAAGTTTTGATCTTCATTTTTCATGGACTGAATATTACTTTGAATGTTGTAGACACCACCCTTGCAAATTTTTGCGAGTTTTTAGAGGAGTTTTGTGGGAGAGCTGAAATTGTCAGTGATGACCGTGATGAATCAGAGTGGCTGGCACTGCCTCTTACTGATCTAAGAGTGCTTGTCAATGAAATAATGTCCATTCGTTCAAAGAAACTTCTTCATTTGGTTTCTCTAGATAACCTGACGAGGCTGTTGAGGGTTTTAGATCATCAGATACATAGAGCAGAAGGATTGTCTGTAGAAGAATGTGAGCATGTGAGTATGCTACTTTTGTGCTATGGTTTTTCACTGTTT

mRNA sequence

GCCTCTGCCGGCGGCTCCGGCTCCGGCTCCGGCTCCGGCTCCGGCCACCGCGGCATCGGCCTCTCCAATACTATTCACTCAGAGGTTGCTCCCTGCCTCCCCTTGCCTTCGCTTCCGGTCTTCTTTGGCGCCTCCGAGCAAGAGCTCAGGCTATTCGATGAGCCGCCCGGGAGCTATGCTACTTCCACCAATGATGTTCTCGCTCAGTCCAAAAAGATCGCTGATCTGCTTCGGGCGACTGACGTCTCTTACTTAAATCTAAGAGAAGATGCTGAGGCTCTTTCAGAAGGGTCTGTGGAGCCTTTTGAACTCTATAAGGAAGTTCTTCGCTATGATGCTGATGCCTTCAATTATACTGCTCCAGGTCCTATTATGGAGCATGTCTCTAGCAGTACAGTATCTGATAGGAAAGTATTTGAGCAAAAACTACCTATTAGAAGTAAAGATGAAGGAGACTGCAGAATAAATCAAAATCAAAAGCATAAGCTTGAATCTATTCAAACTAATGATGCACCAATATCATCTTCTAGAAAAGTCAAAGTAAAGAAGAAAGGCAGAGATGAAACGTCTTCTGTTAGAACAGATTCTTCTGAGCTTCAAGACACCACCCTTGCAAATTTTTGCGAGTTTTTAGAGGAGTTTTGTGGGAGAGCTGAAATTGTCAGTGATGACCGTGATGAATCAGAGTGGCTGGCACTGCCTCTTACTGATCTAAGAGTGCTTGTCAATGAAATAATGTCCATTCGTTCAAAGAAACTTCTTCATTTGGTTTCTCTAGATAACCTGACGAGGCTGTTGAGGGTTTTAGATCATCAGATACATAGAGCAGAAGGATTGTCTGTAGAAGAATGTGAGCATGTGAGTATGCTACTTTTGTGCTATGGTTTTTCACTGTTT

Coding sequence (CDS)

GCCTCTGCCGGCGGCTCCGGCTCCGGCTCCGGCTCCGGCTCCGGCCACCGCGGCATCGGCCTCTCCAATACTATTCACTCAGAGGTTGCTCCCTGCCTCCCCTTGCCTTCGCTTCCGGTCTTCTTTGGCGCCTCCGAGCAAGAGCTCAGGCTATTCGATGAGCCGCCCGGGAGCTATGCTACTTCCACCAATGATGTTCTCGCTCAGTCCAAAAAGATCGCTGATCTGCTTCGGGCGACTGACGTCTCTTACTTAAATCTAAGAGAAGATGCTGAGGCTCTTTCAGAAGGGTCTGTGGAGCCTTTTGAACTCTATAAGGAAGTTCTTCGCTATGATGCTGATGCCTTCAATTATACTGCTCCAGGTCCTATTATGGAGCATGTCTCTAGCAGTACAGTATCTGATAGGAAAGTATTTGAGCAAAAACTACCTATTAGAAGTAAAGATGAAGGAGACTGCAGAATAAATCAAAATCAAAAGCATAAGCTTGAATCTATTCAAACTAATGATGCACCAATATCATCTTCTAGAAAAGTCAAAGTAAAGAAGAAAGGCAGAGATGAAACGTCTTCTGTTAGAACAGATTCTTCTGAGCTTCAAGACACCACCCTTGCAAATTTTTGCGAGTTTTTAGAGGAGTTTTGTGGGAGAGCTGAAATTGTCAGTGATGACCGTGATGAATCAGAGTGGCTGGCACTGCCTCTTACTGATCTAAGAGTGCTTGTCAATGAAATAATGTCCATTCGTTCAAAGAAACTTCTTCATTTGGTTTCTCTAGATAACCTGACGAGGCTGTTGAGGGTTTTAGATCATCAGATACATAGAGCAGAAGGATTGTCTGTAGAAGAATGTGAGCATGTGAGTATGCTACTTTTGTGCTATGGTTTTTCACTGTTT

Protein sequence

ASAGGSGSGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYATSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVEPFELYKEVLRYDADAFNYTAPGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVKVKKKGRDETSSVRTDSSELQDTTLANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEHVSMLLLCYGFSLF

Homology

[Close]

BLAST of MS014519 vs. NCBI nr
Match: XP_022144452.1 (sister chromatid cohesion protein SCC2 isoform X1 [Momordica charantia])

HSP 1 Score: 542.7 bits (1397), Expect = 1.9e-150
Identity = 282/287 (98.26%), Postives = 284/287 (98.95%), Query Frame = 0


Query: 1   ASAGGSGSGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYA 60
           +SA   GSGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYA
Sbjct: 6   SSASAGGSGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYA 65

Query: 61  TSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVEPFELYKEVLRYDADAFNYTA 120
           TSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVEPFELYKEVLRYDADAFNYTA
Sbjct: 66  TSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVEPFELYKEVLRYDADAFNYTA 125

Query: 121 PGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVK 180
           PGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVK
Sbjct: 126 PGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVK 185

Query: 181 VKKKGRDETSSVRTDSSELQDTTLANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRV 240
           VKKKGRDETSSVRTDSSELQDTTLANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRV
Sbjct: 186 VKKKGRDETSSVRTDSSELQDTTLANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRV 245

Query: 241 LVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEHV 288
           LVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEH+
Sbjct: 246 LVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEHL 292

[Close]

BLAST of MS014519 vs. NCBI nr
Match: XP_022144453.1 (sister chromatid cohesion protein SCC2 isoform X2 [Momordica charantia])

HSP 1 Score: 542.7 bits (1397), Expect = 1.9e-150
Identity = 282/287 (98.26%), Postives = 284/287 (98.95%), Query Frame = 0


Query: 1   ASAGGSGSGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYA 60
           +SA   GSGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYA
Sbjct: 6   SSASAGGSGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYA 65

Query: 61  TSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVEPFELYKEVLRYDADAFNYTA 120
           TSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVEPFELYKEVLRYDADAFNYTA
Sbjct: 66  TSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVEPFELYKEVLRYDADAFNYTA 125

Query: 121 PGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVK 180
           PGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVK
Sbjct: 126 PGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVK 185

Query: 181 VKKKGRDETSSVRTDSSELQDTTLANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRV 240
           VKKKGRDETSSVRTDSSELQDTTLANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRV
Sbjct: 186 VKKKGRDETSSVRTDSSELQDTTLANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRV 245

Query: 241 LVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEHV 288
           LVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEH+
Sbjct: 246 LVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEHL 292

[Close]

BLAST of MS014519 vs. NCBI nr
Match: XP_022948643.1 (sister chromatid cohesion protein SCC2 isoform X1 [Cucurbita moschata])

HSP 1 Score: 463.8 bits (1192), Expect = 1.1e-126
Identity = 245/280 (87.50%), Postives = 257/280 (91.79%), Query Frame = 0


Query: 8   SGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYATSTNDVL 67
           S S SGSG RGIGLSNTIHSEVAPCLPLPSLPV FGASE ELRLFDEP GSYAT  +DVL
Sbjct: 8   SASASGSGLRGIGLSNTIHSEVAPCLPLPSLPVSFGASEPELRLFDEPAGSYATLRSDVL 67

Query: 68  AQSKKIADLLRATDVSYLNLREDAEALSEGSVEPFELYKEVLRYDADAFNYTAPGPIMEH 127
           AQSKKIADLLRATDVSYLNLREDA+ L EGSVEPFELY+EVLRYD DAF YT PGPIMEH
Sbjct: 68  AQSKKIADLLRATDVSYLNLREDAKVLPEGSVEPFELYEEVLRYDVDAFKYTTPGPIMEH 127

Query: 128 VSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVKVKKKGRD 187
           VSSS VSDRKVFEQKLPIRS+ EG+ R  QN  HK ES+ TNDAPISSSRKVKVKKKGRD
Sbjct: 128 VSSSMVSDRKVFEQKLPIRSQVEGESRTIQN--HKPESMPTNDAPISSSRKVKVKKKGRD 187

Query: 188 ETSSVRTDSSELQDTTLANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMS 247
           ETSSVRTDSSELQD+TLANFC+FLE+FCGRAEI SDDRDESEWLALPLTDLRVLVNEIMS
Sbjct: 188 ETSSVRTDSSELQDSTLANFCKFLEDFCGRAEIFSDDRDESEWLALPLTDLRVLVNEIMS 247

Query: 248 IRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEHV 288
           IRSKKLLHLVSLD+LTRLL+VLDHQIHRAEGLSVEECEH+
Sbjct: 248 IRSKKLLHLVSLDSLTRLLKVLDHQIHRAEGLSVEECEHL 285

[Close]

BLAST of MS014519 vs. NCBI nr
Match: XP_023523709.1 (sister chromatid cohesion protein SCC2 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 463.0 bits (1190), Expect = 2.0e-126
Identity = 244/280 (87.14%), Postives = 256/280 (91.43%), Query Frame = 0


Query: 8   SGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYATSTNDVL 67
           S S SGSG RGIGLSNTIHSEVAPCLPLPSLPV FGASE ELRLFDEP GSYAT  +DVL
Sbjct: 8   SASASGSGLRGIGLSNTIHSEVAPCLPLPSLPVSFGASEPELRLFDEPAGSYATLRSDVL 67

Query: 68  AQSKKIADLLRATDVSYLNLREDAEALSEGSVEPFELYKEVLRYDADAFNYTAPGPIMEH 127
           AQSKKIADLLRATDVSYLNLREDA+ L EGSVEPFELY+EVLRYD DAF YT PGPIMEH
Sbjct: 68  AQSKKIADLLRATDVSYLNLREDAKVLPEGSVEPFELYEEVLRYDVDAFKYTTPGPIMEH 127

Query: 128 VSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVKVKKKGRD 187
           VSSS VSDRKVFEQKLPIRS+ EG+ R  QN  HK ES+ TNDAP+SSSRKVKVKKKGRD
Sbjct: 128 VSSSMVSDRKVFEQKLPIRSQVEGESRTIQN--HKPESMPTNDAPMSSSRKVKVKKKGRD 187

Query: 188 ETSSVRTDSSELQDTTLANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMS 247
           ETSSVRTDSSELQD TLANFC+FLE+FCGRAEI SDDRDESEWLALPLTDLRVLVNEIMS
Sbjct: 188 ETSSVRTDSSELQDATLANFCKFLEDFCGRAEIFSDDRDESEWLALPLTDLRVLVNEIMS 247

Query: 248 IRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEHV 288
           IRSKKLLHLVSLD+LTRLL+VLDHQIHRAEGLSVEECEH+
Sbjct: 248 IRSKKLLHLVSLDSLTRLLKVLDHQIHRAEGLSVEECEHI 285

[Close]

BLAST of MS014519 vs. NCBI nr
Match: XP_022998260.1 (sister chromatid cohesion protein SCC2 isoform X1 [Cucurbita maxima])

HSP 1 Score: 462.2 bits (1188), Expect = 3.3e-126
Identity = 244/280 (87.14%), Postives = 256/280 (91.43%), Query Frame = 0


Query: 8   SGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYATSTNDVL 67
           S S SGSG RGIGLSNTIHSEVAPCLPLPSLPV FGASE ELRLFDEP GSYAT  +DVL
Sbjct: 8   SASASGSGLRGIGLSNTIHSEVAPCLPLPSLPVSFGASEPELRLFDEPAGSYATLRSDVL 67

Query: 68  AQSKKIADLLRATDVSYLNLREDAEALSEGSVEPFELYKEVLRYDADAFNYTAPGPIMEH 127
           AQSKKIADLLRATDVSYLNLREDA+ L EGSVEPFELY+EVLRYD DAF Y  PGPIMEH
Sbjct: 68  AQSKKIADLLRATDVSYLNLREDAKVLPEGSVEPFELYEEVLRYDVDAFKYITPGPIMEH 127

Query: 128 VSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVKVKKKGRD 187
           VSSS VSDRKVFEQKLPIRS+ EG+ R  QN  HK ES+ TNDAPISSSRKVKVKKKGRD
Sbjct: 128 VSSSMVSDRKVFEQKLPIRSQVEGESRTIQN--HKPESMPTNDAPISSSRKVKVKKKGRD 187

Query: 188 ETSSVRTDSSELQDTTLANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMS 247
           E SSVRTDSSELQDTTLANFC+FLE+FCGRAEI+SDDRDESEWLALPLTDLRVLVNEIMS
Sbjct: 188 EMSSVRTDSSELQDTTLANFCKFLEDFCGRAEIISDDRDESEWLALPLTDLRVLVNEIMS 247

Query: 248 IRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEHV 288
           IRSKKLLHLVSLD+LTRLL+VLDHQIHRAEGLSVEECEH+
Sbjct: 248 IRSKKLLHLVSLDSLTRLLKVLDHQIHRAEGLSVEECEHL 285

[Close]

BLAST of MS014519 vs. ExPASy Swiss-Prot
Match: A5HEI1 (Sister chromatid cohesion protein SCC2 OS=Arabidopsis thaliana OX=3702 GN=SCC2 PE=1 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 2.5e-60
Identity = 145/331 (43.81%), Postives = 204/331 (61.63%), Query Frame = 0


Query: 1   ASAGGSGSGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQ-ELRLFDE---PP 60
           ++   SG GS SG  H GIGL+NT+ SEV P LPLPSLP+F GA+E  E +LFDE     
Sbjct: 2   SNPSSSGLGSSSGLTHFGIGLANTVQSEVTPYLPLPSLPIFCGAAEPGEFKLFDEVGQGS 61

Query: 61  GSYATSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVEPFELYKEVLRYDADAF 120
           G  +   +++LAQS +IA++L  TDVSYL+LR +A A    S E F+LY  VLR +  AF
Sbjct: 62  GYRSLDRSEILAQSSRIANMLHETDVSYLDLRNEARAPDCNSGEHFQLYDLVLRCNPGAF 121

Query: 121 NYTAPGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGD---------------CRINQNQKH 180
            Y  PGP  + + ++    + + E  +P++ + + D                R N  + H
Sbjct: 122 EYVTPGPTCDPLFTNEGPQKIISEPSVPVKMQRQTDTHLARSIEPEPVKRVLRPNHVEDH 181

Query: 181 KLE-SIQTNDAP-----------------ISSSRKVKVKKKGRDETSSVRTDSSELQDTT 240
             +    TN +P                 +S+S+K K KKK +D+ SSV+ D S LQ++ 
Sbjct: 182 SWQHETLTNQSPKDVTAYDSRPETITMNELSASKKPKGKKKRKDDLSSVQPDPSVLQESI 241

Query: 241 LANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLDNLT 293
           + NFCE LE+FCGRAE+  DDRDE+EW ++P+ ++RVL+NE+M+IRSK LLH+V +D L+
Sbjct: 242 VQNFCEMLEDFCGRAEVPGDDRDEAEWSSVPVDEVRVLINELMTIRSKMLLHMVPVDILS 301

[Close]

BLAST of MS014519 vs. ExPASy TrEMBL
Match: A0A6J1CTQ8 (Sister chromatid cohesion protein OS=Momordica charantia OX=3673 GN=LOC111014134 PE=3 SV=1)

HSP 1 Score: 542.7 bits (1397), Expect = 9.4e-151
Identity = 282/287 (98.26%), Postives = 284/287 (98.95%), Query Frame = 0


Query: 1   ASAGGSGSGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYA 60
           +SA   GSGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYA
Sbjct: 6   SSASAGGSGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYA 65

Query: 61  TSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVEPFELYKEVLRYDADAFNYTA 120
           TSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVEPFELYKEVLRYDADAFNYTA
Sbjct: 66  TSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVEPFELYKEVLRYDADAFNYTA 125

Query: 121 PGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVK 180
           PGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVK
Sbjct: 126 PGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVK 185

Query: 181 VKKKGRDETSSVRTDSSELQDTTLANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRV 240
           VKKKGRDETSSVRTDSSELQDTTLANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRV
Sbjct: 186 VKKKGRDETSSVRTDSSELQDTTLANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRV 245

Query: 241 LVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEHV 288
           LVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEH+
Sbjct: 246 LVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEHL 292

[Close]

BLAST of MS014519 vs. ExPASy TrEMBL
Match: A0A6J1CTA5 (Sister chromatid cohesion protein OS=Momordica charantia OX=3673 GN=LOC111014134 PE=3 SV=1)

HSP 1 Score: 542.7 bits (1397), Expect = 9.4e-151
Identity = 282/287 (98.26%), Postives = 284/287 (98.95%), Query Frame = 0


Query: 1   ASAGGSGSGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYA 60
           +SA   GSGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYA
Sbjct: 6   SSASAGGSGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYA 65

Query: 61  TSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVEPFELYKEVLRYDADAFNYTA 120
           TSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVEPFELYKEVLRYDADAFNYTA
Sbjct: 66  TSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVEPFELYKEVLRYDADAFNYTA 125

Query: 121 PGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVK 180
           PGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVK
Sbjct: 126 PGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVK 185

Query: 181 VKKKGRDETSSVRTDSSELQDTTLANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRV 240
           VKKKGRDETSSVRTDSSELQDTTLANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRV
Sbjct: 186 VKKKGRDETSSVRTDSSELQDTTLANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRV 245

Query: 241 LVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEHV 288
           LVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEH+
Sbjct: 246 LVNEIMSIRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEHL 292

[Close]

BLAST of MS014519 vs. ExPASy TrEMBL
Match: A0A6J1G9V6 (Sister chromatid cohesion protein OS=Cucurbita moschata OX=3662 GN=LOC111452260 PE=3 SV=1)

HSP 1 Score: 463.8 bits (1192), Expect = 5.6e-127
Identity = 245/280 (87.50%), Postives = 257/280 (91.79%), Query Frame = 0


Query: 8   SGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYATSTNDVL 67
           S S SGSG RGIGLSNTIHSEVAPCLPLPSLPV FGASE ELRLFDEP GSYAT  +DVL
Sbjct: 8   SASASGSGLRGIGLSNTIHSEVAPCLPLPSLPVSFGASEPELRLFDEPAGSYATLRSDVL 67

Query: 68  AQSKKIADLLRATDVSYLNLREDAEALSEGSVEPFELYKEVLRYDADAFNYTAPGPIMEH 127
           AQSKKIADLLRATDVSYLNLREDA+ L EGSVEPFELY+EVLRYD DAF YT PGPIMEH
Sbjct: 68  AQSKKIADLLRATDVSYLNLREDAKVLPEGSVEPFELYEEVLRYDVDAFKYTTPGPIMEH 127

Query: 128 VSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVKVKKKGRD 187
           VSSS VSDRKVFEQKLPIRS+ EG+ R  QN  HK ES+ TNDAPISSSRKVKVKKKGRD
Sbjct: 128 VSSSMVSDRKVFEQKLPIRSQVEGESRTIQN--HKPESMPTNDAPISSSRKVKVKKKGRD 187

Query: 188 ETSSVRTDSSELQDTTLANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMS 247
           ETSSVRTDSSELQD+TLANFC+FLE+FCGRAEI SDDRDESEWLALPLTDLRVLVNEIMS
Sbjct: 188 ETSSVRTDSSELQDSTLANFCKFLEDFCGRAEIFSDDRDESEWLALPLTDLRVLVNEIMS 247

Query: 248 IRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEHV 288
           IRSKKLLHLVSLD+LTRLL+VLDHQIHRAEGLSVEECEH+
Sbjct: 248 IRSKKLLHLVSLDSLTRLLKVLDHQIHRAEGLSVEECEHL 285

[Close]

BLAST of MS014519 vs. ExPASy TrEMBL
Match: A0A6J1K9S4 (Sister chromatid cohesion protein OS=Cucurbita maxima OX=3661 GN=LOC111492952 PE=3 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 1.6e-126
Identity = 244/280 (87.14%), Postives = 256/280 (91.43%), Query Frame = 0


Query: 8   SGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYATSTNDVL 67
           S S SGSG RGIGLSNTIHSEVAPCLPLPSLPV FGASE ELRLFDEP GSYAT  +DVL
Sbjct: 8   SASASGSGLRGIGLSNTIHSEVAPCLPLPSLPVSFGASEPELRLFDEPAGSYATLRSDVL 67

Query: 68  AQSKKIADLLRATDVSYLNLREDAEALSEGSVEPFELYKEVLRYDADAFNYTAPGPIMEH 127
           AQSKKIADLLRATDVSYLNLREDA+ L EGSVEPFELY+EVLRYD DAF Y  PGPIMEH
Sbjct: 68  AQSKKIADLLRATDVSYLNLREDAKVLPEGSVEPFELYEEVLRYDVDAFKYITPGPIMEH 127

Query: 128 VSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVKVKKKGRD 187
           VSSS VSDRKVFEQKLPIRS+ EG+ R  QN  HK ES+ TNDAPISSSRKVKVKKKGRD
Sbjct: 128 VSSSMVSDRKVFEQKLPIRSQVEGESRTIQN--HKPESMPTNDAPISSSRKVKVKKKGRD 187

Query: 188 ETSSVRTDSSELQDTTLANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMS 247
           E SSVRTDSSELQDTTLANFC+FLE+FCGRAEI+SDDRDESEWLALPLTDLRVLVNEIMS
Sbjct: 188 EMSSVRTDSSELQDTTLANFCKFLEDFCGRAEIISDDRDESEWLALPLTDLRVLVNEIMS 247

Query: 248 IRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEHV 288
           IRSKKLLHLVSLD+LTRLL+VLDHQIHRAEGLSVEECEH+
Sbjct: 248 IRSKKLLHLVSLDSLTRLLKVLDHQIHRAEGLSVEECEHL 285

[Close]

BLAST of MS014519 vs. ExPASy TrEMBL
Match: A0A6J1KC20 (Sister chromatid cohesion protein OS=Cucurbita maxima OX=3661 GN=LOC111492952 PE=3 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 1.6e-126
Identity = 244/280 (87.14%), Postives = 256/280 (91.43%), Query Frame = 0


Query: 8   SGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQELRLFDEPPGSYATSTNDVL 67
           S S SGSG RGIGLSNTIHSEVAPCLPLPSLPV FGASE ELRLFDEP GSYAT  +DVL
Sbjct: 8   SASASGSGLRGIGLSNTIHSEVAPCLPLPSLPVSFGASEPELRLFDEPAGSYATLRSDVL 67

Query: 68  AQSKKIADLLRATDVSYLNLREDAEALSEGSVEPFELYKEVLRYDADAFNYTAPGPIMEH 127
           AQSKKIADLLRATDVSYLNLREDA+ L EGSVEPFELY+EVLRYD DAF Y  PGPIMEH
Sbjct: 68  AQSKKIADLLRATDVSYLNLREDAKVLPEGSVEPFELYEEVLRYDVDAFKYITPGPIMEH 127

Query: 128 VSSSTVSDRKVFEQKLPIRSKDEGDCRINQNQKHKLESIQTNDAPISSSRKVKVKKKGRD 187
           VSSS VSDRKVFEQKLPIRS+ EG+ R  QN  HK ES+ TNDAPISSSRKVKVKKKGRD
Sbjct: 128 VSSSMVSDRKVFEQKLPIRSQVEGESRTIQN--HKPESMPTNDAPISSSRKVKVKKKGRD 187

Query: 188 ETSSVRTDSSELQDTTLANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMS 247
           E SSVRTDSSELQDTTLANFC+FLE+FCGRAEI+SDDRDESEWLALPLTDLRVLVNEIMS
Sbjct: 188 EMSSVRTDSSELQDTTLANFCKFLEDFCGRAEIISDDRDESEWLALPLTDLRVLVNEIMS 247

Query: 248 IRSKKLLHLVSLDNLTRLLRVLDHQIHRAEGLSVEECEHV 288
           IRSKKLLHLVSLD+LTRLL+VLDHQIHRAEGLSVEECEH+
Sbjct: 248 IRSKKLLHLVSLDSLTRLLKVLDHQIHRAEGLSVEECEHL 285

[Close]

BLAST of MS014519 vs. TAIR 10
Match: AT5G15540.1 (PHD finger family protein )

HSP 1 Score: 233.8 bits (595), Expect = 1.8e-61
Identity = 145/331 (43.81%), Postives = 204/331 (61.63%), Query Frame = 0


Query: 1   ASAGGSGSGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQ-ELRLFDE---PP 60
           ++   SG GS SG  H GIGL+NT+ SEV P LPLPSLP+F GA+E  E +LFDE     
Sbjct: 2   SNPSSSGLGSSSGLTHFGIGLANTVQSEVTPYLPLPSLPIFCGAAEPGEFKLFDEVGQGS 61

Query: 61  GSYATSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVEPFELYKEVLRYDADAF 120
           G  +   +++LAQS +IA++L  TDVSYL+LR +A A    S E F+LY  VLR +  AF
Sbjct: 62  GYRSLDRSEILAQSSRIANMLHETDVSYLDLRNEARAPDCNSGEHFQLYDLVLRCNPGAF 121

Query: 121 NYTAPGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGD---------------CRINQNQKH 180
            Y  PGP  + + ++    + + E  +P++ + + D                R N  + H
Sbjct: 122 EYVTPGPTCDPLFTNEGPQKIISEPSVPVKMQRQTDTHLARSIEPEPVKRVLRPNHVEDH 181

Query: 181 KLE-SIQTNDAP-----------------ISSSRKVKVKKKGRDETSSVRTDSSELQDTT 240
             +    TN +P                 +S+S+K K KKK +D+ SSV+ D S LQ++ 
Sbjct: 182 SWQHETLTNQSPKDVTAYDSRPETITMNELSASKKPKGKKKRKDDLSSVQPDPSVLQESI 241

Query: 241 LANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLDNLT 293
           + NFCE LE+FCGRAE+  DDRDE+EW ++P+ ++RVL+NE+M+IRSK LLH+V +D L+
Sbjct: 242 VQNFCEMLEDFCGRAEVPGDDRDEAEWSSVPVDEVRVLINELMTIRSKMLLHMVPVDILS 301

[Close]

BLAST of MS014519 vs. TAIR 10
Match: AT5G15540.2 (PHD finger family protein )

HSP 1 Score: 223.8 bits (569), Expect = 1.9e-58
Identity = 143/331 (43.20%), Postives = 204/331 (61.63%), Query Frame = 0


Query: 1   ASAGGSGSGSGSGSGHRGIGLSNTIHSEVAPCLPLPSLPVFFGASEQ-ELRLFDE---PP 60
           ++   SG GS SG  H GIGL+NT+ SEV P LPLPSLP+F GA+E  E +LFDE     
Sbjct: 2   SNPSSSGLGSSSGLTHFGIGLANTVQSEVTPYLPLPSLPIFCGAAEPGEFKLFDEVGQGS 61

Query: 61  GSYATSTNDVLAQSKKIADLLRATDVSYLNLREDAEALSEGSVEPFELYKEVLRYDADAF 120
           G  +   +++LAQS +IA++L  TDVSYL+LR +A A    S E F+LY  VLR +  AF
Sbjct: 62  GYRSLDRSEILAQSSRIANMLHETDVSYLDLRNEARAPDCNSGEHFQLYDLVLRCNPGAF 121

Query: 121 NYTAPGPIMEHVSSSTVSDRKVFEQKLPIRSKDEGD---------------CRINQNQKH 180
           + +  GP  + + ++    + + E  +P++ + + D                R N  + H
Sbjct: 122 DLS--GPTCDPLFTNEGPQKIISEPSVPVKMQRQTDTHLARSIEPEPVKRVLRPNHVEDH 181

Query: 181 KLE-SIQTNDAP-----------------ISSSRKVKVKKKGRDETSSVRTDSSELQDTT 240
             +    TN +P                 +S+S+K K KKK +D+ SSV+ D S LQ++ 
Sbjct: 182 SWQHETLTNQSPKDVTAYDSRPETITMNELSASKKPKGKKKRKDDLSSVQPDPSVLQESI 241

Query: 241 LANFCEFLEEFCGRAEIVSDDRDESEWLALPLTDLRVLVNEIMSIRSKKLLHLVSLDNLT 293
           + NFCE LE+FCGRAE+  DDRDE+EW ++P+ ++RVL+NE+M+IRSK LLH+V +D L+
Sbjct: 242 VQNFCEMLEDFCGRAEVPGDDRDEAEWSSVPVDEVRVLINELMTIRSKMLLHMVPVDILS 301

The following BLAST results are available for this feature:

BLAST of MS014519 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144452.1	1.9e-150	98.26	sister chromatid cohesion protein SCC2 isoform X1 [Momordica charantia]	[more]
XP_022144453.1	1.9e-150	98.26	sister chromatid cohesion protein SCC2 isoform X2 [Momordica charantia]	[more]
XP_022948643.1	1.1e-126	87.50	sister chromatid cohesion protein SCC2 isoform X1 [Cucurbita moschata]	[more]
XP_023523709.1	2.0e-126	87.14	sister chromatid cohesion protein SCC2 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022998260.1	3.3e-126	87.14	sister chromatid cohesion protein SCC2 isoform X1 [Cucurbita maxima]	[more]

BLAST of MS014519 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A5HEI1	2.5e-60	43.81	Sister chromatid cohesion protein SCC2 OS=Arabidopsis thaliana OX=3702 GN=SCC2 P...	[more]

BLAST of MS014519 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CTQ8	9.4e-151	98.26	Sister chromatid cohesion protein OS=Momordica charantia OX=3673 GN=LOC111014134...	[more]
A0A6J1CTA5	9.4e-151	98.26	Sister chromatid cohesion protein OS=Momordica charantia OX=3673 GN=LOC111014134...	[more]
A0A6J1G9V6	5.6e-127	87.50	Sister chromatid cohesion protein OS=Cucurbita moschata OX=3662 GN=LOC111452260 ...	[more]
A0A6J1K9S4	1.6e-126	87.14	Sister chromatid cohesion protein OS=Cucurbita maxima OX=3661 GN=LOC111492952 PE...	[more]
A0A6J1KC20	1.6e-126	87.14	Sister chromatid cohesion protein OS=Cucurbita maxima OX=3661 GN=LOC111492952 PE...	[more]

BLAST of MS014519 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15540.1	1.8e-61	43.81	PHD finger family protein	[more]
AT5G15540.2	1.9e-58	43.20	PHD finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..197
None	No IPR available	PANTHER	PTHR21704:SF18	EXPRESSED PROTEIN-RELATED	coord: 17..281
IPR033031	Scc2/Nipped-B family	PANTHER	PTHR21704	NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED	coord: 17..281

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS014519.1	MS014519.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0061780	mitotic cohesin loading
biological_process	GO:0010468	regulation of gene expression
molecular_function	GO:0003682	chromatin binding