MS014507 (gene) Bitter gourd (TR) v1

Overview


Name	MS014507
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Clp R domain-containing protein
Location	scaffold553: 480442 .. 481765 (+)
RNA-Seq Expression	MS014507
Synteny	MS014507

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATGGAAGGAGTAGCTTCAATCGCACTTCTGCCGTGCGGCTCAGTCTCCGGCCACTTCATTCAACTTCCTCACTCAATCTGCTACGGCCTCCATGGCACTGGTAACTCTTTTGCAGCCATTTCAAATGTTTACTTATGAAAGAACATTTCAAATGTTCTTGGGTGGTGGGTTAGGGGTTTAGATTTCTGAAATACGCTGTAACGGATTGAAAAATCAATTGTACACGAGTGGGGACGGACTCGCTTTGGAAATTAAAGGTTGAATCTATCGGGTTTTACTGATCTTGGTACTAGAAGACTTGTTTTAGCTTGATTACTGGATACCACATGGAGTATTGAAGAACTCGATAGTTTGGTTATGTCTCTTACCATTTTGAAACTGATTTTGGTGATAAACAACATGTTCTAAGATTTCTGCGGTGGCATGGTACCTCATTTCCATGAATTTTTTAGCCTCAAGAGTCGTGAGTCTGTCAATATTGTATATCCTTTTCCTAGAATGCTTGGTTTTTTTCCTGTTTTTTTGATAATTTTGGTTTGAAATATTTGTCTTTCTCTCCTCTTTCTGGCTCCAAGAATTGGAATGTGAAAGAGAATGCAGCAGGGGTGAGGATTACCGCTTGATCAAGCTCACTATTACAAACTACAATGTAGGATATTTTTGCCCTCTTTACCTTCTTTCCTCTCTGCTGCTTGAATTTCATTCTCAGTCAGCAACTTTTAGTTGTTTGTTTGTAATCGTTCTGATCCTTTTACATCTCGATTGGTTACTGAATGTCACAGAATAAGAAAGAACAAACAGTCGTTGTTGAACGTAGAGGCCATGACGCTGCACGGTTTCACAGCATTGAGCACGCTCATGGGTAAGTCCCAACAGATGCAAGAACTCTCTTCTCTCCTACTTTTTCATCATATCCCATTAATTTTCTTTTAGCTTCTAGCTTTAGCAATTTGCTTAGGTATCTCAAACCCTGTTTACCTTGTATATCGATGTTTTGAATGTTTGAGCTGCTTTTCTAGTTGAACAATTGAATTATCATAGATGCTAGATTCTGCTTTCTCAACCTGATATAAATTTCGACTTGTCACGGGCCTGAATCCGTTGCCTTCTTGTTTTTACTGGTTGTATATTTGTAGATCAGTAAGTTTATCACATGTTTGTAGACAGTTGGGAAGAGGATGTAGTAAGCCTGGTTAAAAAGAAGCATGGAAAGAACCAGGTTGCGATATCGTTCGAGTGTCAAACATTGAAGTCGGAGCAAGCAGCCGAAGAACATATCAGACAGTTTATTCCCAAATTAGCTGGCCAGGATGCTGTG

mRNA sequence

ATGGCGATGGAAGGAGTAGCTTCAATCGCACTTCTGCCGTGCGGCTCAGTCTCCGGCCACTTCATTCAACTTCCTCACTCAATCTGCTACGGCCTCCATGGCACTGAATTGGAATGTGAAAGAGAATGCAGCAGGGGTGAGGATTACCGCTTGATCAAGCTCACTATTACAAACTACAATAATAAGAAAGAACAAACAGTCGTTGTTGAACGTAGAGGCCATGACGCTGCACGGTTTCACAGCATTGAGCACGCTCATGGTTGGGAAGAGGATGTAGTAAGCCTGGTTAAAAAGAAGCATGGAAAGAACCAGGTTGCGATATCGTTCGAGTGTCAAACATTGAAGTCGGAGCAAGCAGCCGAAGAACATATCAGACAGTTTATTCCCAAATTAGCTGGCCAGGATGCTGTG

Coding sequence (CDS)

ATGGCGATGGAAGGAGTAGCTTCAATCGCACTTCTGCCGTGCGGCTCAGTCTCCGGCCACTTCATTCAACTTCCTCACTCAATCTGCTACGGCCTCCATGGCACTGAATTGGAATGTGAAAGAGAATGCAGCAGGGGTGAGGATTACCGCTTGATCAAGCTCACTATTACAAACTACAATAATAAGAAAGAACAAACAGTCGTTGTTGAACGTAGAGGCCATGACGCTGCACGGTTTCACAGCATTGAGCACGCTCATGGTTGGGAAGAGGATGTAGTAAGCCTGGTTAAAAAGAAGCATGGAAAGAACCAGGTTGCGATATCGTTCGAGTGTCAAACATTGAAGTCGGAGCAAGCAGCCGAAGAACATATCAGACAGTTTATTCCCAAATTAGCTGGCCAGGATGCTGTG

Protein sequence

MAMEGVASIALLPCGSVSGHFIQLPHSICYGLHGTELECERECSRGEDYRLIKLTITNYNNKKEQTVVVERRGHDAARFHSIEHAHGWEEDVVSLVKKKHGKNQVAISFECQTLKSEQAAEEHIRQFIPKLAGQDAV

Homology

[Close]

BLAST of MS014507 vs. NCBI nr
Match: XP_022144426.1 (uncharacterized protein LOC111014113 isoform X1 [Momordica charantia])

HSP 1 Score: 282.3 bits (721), Expect = 2.2e-72
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MAMEGVASIALLPCGSVSGHFIQLPHSICYGLHGTELECERECSRGEDYRLIKLTITNYN 60
           MAMEGVASIALLPCGSVSGHFIQLPHSICYGLHGTELECERECSRGEDYRLIKLTITNYN
Sbjct: 18  MAMEGVASIALLPCGSVSGHFIQLPHSICYGLHGTELECERECSRGEDYRLIKLTITNYN 77

Query: 61  NKKEQTVVVERRGHDAARFHSIEHAHGWEEDVVSLVKKKHGKNQVAISFECQTLKSEQAA 120
           NKKEQTVVVERRGHDAARFHSIEHAHGWEEDVVSLVKKKHGKNQVAISFECQTLKSEQAA
Sbjct: 78  NKKEQTVVVERRGHDAARFHSIEHAHGWEEDVVSLVKKKHGKNQVAISFECQTLKSEQAA 137

Query: 121 EEHIRQFIPKLAGQDAV 138
           EEHIRQFIPKLAGQDAV
Sbjct: 138 EEHIRQFIPKLAGQDAV 154

[Close]

BLAST of MS014507 vs. NCBI nr
Match: XP_022144427.1 (uncharacterized protein LOC111014113 isoform X2 [Momordica charantia])

HSP 1 Score: 282.3 bits (721), Expect = 2.2e-72
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MAMEGVASIALLPCGSVSGHFIQLPHSICYGLHGTELECERECSRGEDYRLIKLTITNYN 60
           MAMEGVASIALLPCGSVSGHFIQLPHSICYGLHGTELECERECSRGEDYRLIKLTITNYN
Sbjct: 18  MAMEGVASIALLPCGSVSGHFIQLPHSICYGLHGTELECERECSRGEDYRLIKLTITNYN 77

Query: 61  NKKEQTVVVERRGHDAARFHSIEHAHGWEEDVVSLVKKKHGKNQVAISFECQTLKSEQAA 120
           NKKEQTVVVERRGHDAARFHSIEHAHGWEEDVVSLVKKKHGKNQVAISFECQTLKSEQAA
Sbjct: 78  NKKEQTVVVERRGHDAARFHSIEHAHGWEEDVVSLVKKKHGKNQVAISFECQTLKSEQAA 137

Query: 121 EEHIRQFIPKLAGQDAV 138
           EEHIRQFIPKLAGQDAV
Sbjct: 138 EEHIRQFIPKLAGQDAV 154

[Close]

BLAST of MS014507 vs. NCBI nr
Match: KAG7018156.1 (hypothetical protein SDJN02_20024 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 263.1 bits (671), Expect = 1.4e-66
Identity = 124/137 (90.51%), Postives = 131/137 (95.62%), Query Frame = 0


Query: 1   MAMEGVASIALLPCGSVSGHFIQLPHSICYGLHGTELECERECSRGEDYRLIKLTITNYN 60
           MAMEGVASIALLPCGSVSGHFIQLPH +CYGLHGTELECERECSRGEDYRLIKLTITNYN
Sbjct: 16  MAMEGVASIALLPCGSVSGHFIQLPHFVCYGLHGTELECERECSRGEDYRLIKLTITNYN 75

Query: 61  NKKEQTVVVERRGHDAARFHSIEHAHGWEEDVVSLVKKKHGKNQVAISFECQTLKSEQAA 120
           NK+E+TVVVERRGHDAARFHSI HAHGWEEDVV +V+KKHGKN + ISFECQTLKSEQAA
Sbjct: 76  NKQERTVVVERRGHDAARFHSIVHAHGWEEDVVKMVEKKHGKNDIMISFECQTLKSEQAA 135

Query: 121 EEHIRQFIPKLAGQDAV 138
           E+HIRQFIPKL GQDAV
Sbjct: 136 EDHIRQFIPKLVGQDAV 152

[Close]

BLAST of MS014507 vs. NCBI nr
Match: XP_023515562.1 (uncharacterized protein LOC111779684 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 260.0 bits (663), Expect = 1.2e-65
Identity = 123/137 (89.78%), Postives = 130/137 (94.89%), Query Frame = 0


Query: 1   MAMEGVASIALLPCGSVSGHFIQLPHSICYGLHGTELECERECSRGEDYRLIKLTITNYN 60
           MAMEGVASIALLPCGSVSGHFIQLPH +CYGLHGTELECERECSRGEDYRLIKLTITNYN
Sbjct: 11  MAMEGVASIALLPCGSVSGHFIQLPHFVCYGLHGTELECERECSRGEDYRLIKLTITNYN 70

Query: 61  NKKEQTVVVERRGHDAARFHSIEHAHGWEEDVVSLVKKKHGKNQVAISFECQTLKSEQAA 120
           NK+E+TVVVERRGHDAARF SI HAHGWEEDVV +V+KKHGKN + ISFECQTLKSEQAA
Sbjct: 71  NKQERTVVVERRGHDAARFRSIVHAHGWEEDVVKMVEKKHGKNDIMISFECQTLKSEQAA 130

Query: 121 EEHIRQFIPKLAGQDAV 138
           E+HIRQFIPKL GQDAV
Sbjct: 131 EDHIRQFIPKLVGQDAV 147

[Close]

BLAST of MS014507 vs. NCBI nr
Match: XP_022930568.1 (uncharacterized protein LOC111436977 isoform X1 [Cucurbita moschata])

HSP 1 Score: 260.0 bits (663), Expect = 1.2e-65
Identity = 123/137 (89.78%), Postives = 130/137 (94.89%), Query Frame = 0


Query: 1   MAMEGVASIALLPCGSVSGHFIQLPHSICYGLHGTELECERECSRGEDYRLIKLTITNYN 60
           MAMEGVASIALLPCGSVSGHFIQLPH +CYGLHGTELECERECSRGEDYRLIKLTITNYN
Sbjct: 13  MAMEGVASIALLPCGSVSGHFIQLPHFVCYGLHGTELECERECSRGEDYRLIKLTITNYN 72

Query: 61  NKKEQTVVVERRGHDAARFHSIEHAHGWEEDVVSLVKKKHGKNQVAISFECQTLKSEQAA 120
           NK+E+TVVVERRGHDAARF SI HAHGWEEDVV +V+KKHGKN + ISFECQTLKSEQAA
Sbjct: 73  NKQERTVVVERRGHDAARFRSIVHAHGWEEDVVKMVEKKHGKNDIMISFECQTLKSEQAA 132

Query: 121 EEHIRQFIPKLAGQDAV 138
           E+HIRQFIPKL GQDAV
Sbjct: 133 EDHIRQFIPKLVGQDAV 149

[Close]

BLAST of MS014507 vs. ExPASy TrEMBL
Match: A0A6J1CTN4 (uncharacterized protein LOC111014113 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111014113 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.1e-72
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MAMEGVASIALLPCGSVSGHFIQLPHSICYGLHGTELECERECSRGEDYRLIKLTITNYN 60
           MAMEGVASIALLPCGSVSGHFIQLPHSICYGLHGTELECERECSRGEDYRLIKLTITNYN
Sbjct: 18  MAMEGVASIALLPCGSVSGHFIQLPHSICYGLHGTELECERECSRGEDYRLIKLTITNYN 77

Query: 61  NKKEQTVVVERRGHDAARFHSIEHAHGWEEDVVSLVKKKHGKNQVAISFECQTLKSEQAA 120
           NKKEQTVVVERRGHDAARFHSIEHAHGWEEDVVSLVKKKHGKNQVAISFECQTLKSEQAA
Sbjct: 78  NKKEQTVVVERRGHDAARFHSIEHAHGWEEDVVSLVKKKHGKNQVAISFECQTLKSEQAA 137

Query: 121 EEHIRQFIPKLAGQDAV 138
           EEHIRQFIPKLAGQDAV
Sbjct: 138 EEHIRQFIPKLAGQDAV 154

[Close]

BLAST of MS014507 vs. ExPASy TrEMBL
Match: A0A6J1CTD5 (uncharacterized protein LOC111014113 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111014113 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.1e-72
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MAMEGVASIALLPCGSVSGHFIQLPHSICYGLHGTELECERECSRGEDYRLIKLTITNYN 60
           MAMEGVASIALLPCGSVSGHFIQLPHSICYGLHGTELECERECSRGEDYRLIKLTITNYN
Sbjct: 18  MAMEGVASIALLPCGSVSGHFIQLPHSICYGLHGTELECERECSRGEDYRLIKLTITNYN 77

Query: 61  NKKEQTVVVERRGHDAARFHSIEHAHGWEEDVVSLVKKKHGKNQVAISFECQTLKSEQAA 120
           NKKEQTVVVERRGHDAARFHSIEHAHGWEEDVVSLVKKKHGKNQVAISFECQTLKSEQAA
Sbjct: 78  NKKEQTVVVERRGHDAARFHSIEHAHGWEEDVVSLVKKKHGKNQVAISFECQTLKSEQAA 137

Query: 121 EEHIRQFIPKLAGQDAV 138
           EEHIRQFIPKLAGQDAV
Sbjct: 138 EEHIRQFIPKLAGQDAV 154

[Close]

BLAST of MS014507 vs. ExPASy TrEMBL
Match: A0A6J1ERU0 (uncharacterized protein LOC111436977 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111436977 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 5.6e-66
Identity = 123/137 (89.78%), Postives = 130/137 (94.89%), Query Frame = 0


Query: 1   MAMEGVASIALLPCGSVSGHFIQLPHSICYGLHGTELECERECSRGEDYRLIKLTITNYN 60
           MAMEGVASIALLPCGSVSGHFIQLPH +CYGLHGTELECERECSRGEDYRLIKLTITNYN
Sbjct: 11  MAMEGVASIALLPCGSVSGHFIQLPHFVCYGLHGTELECERECSRGEDYRLIKLTITNYN 70

Query: 61  NKKEQTVVVERRGHDAARFHSIEHAHGWEEDVVSLVKKKHGKNQVAISFECQTLKSEQAA 120
           NK+E+TVVVERRGHDAARF SI HAHGWEEDVV +V+KKHGKN + ISFECQTLKSEQAA
Sbjct: 71  NKQERTVVVERRGHDAARFRSIVHAHGWEEDVVKMVEKKHGKNDIMISFECQTLKSEQAA 130

Query: 121 EEHIRQFIPKLAGQDAV 138
           E+HIRQFIPKL GQDAV
Sbjct: 131 EDHIRQFIPKLVGQDAV 147

[Close]

BLAST of MS014507 vs. ExPASy TrEMBL
Match: A0A6J1EVL3 (uncharacterized protein LOC111436977 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111436977 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 5.6e-66
Identity = 123/137 (89.78%), Postives = 130/137 (94.89%), Query Frame = 0


Query: 1   MAMEGVASIALLPCGSVSGHFIQLPHSICYGLHGTELECERECSRGEDYRLIKLTITNYN 60
           MAMEGVASIALLPCGSVSGHFIQLPH +CYGLHGTELECERECSRGEDYRLIKLTITNYN
Sbjct: 13  MAMEGVASIALLPCGSVSGHFIQLPHFVCYGLHGTELECERECSRGEDYRLIKLTITNYN 72

Query: 61  NKKEQTVVVERRGHDAARFHSIEHAHGWEEDVVSLVKKKHGKNQVAISFECQTLKSEQAA 120
           NK+E+TVVVERRGHDAARF SI HAHGWEEDVV +V+KKHGKN + ISFECQTLKSEQAA
Sbjct: 73  NKQERTVVVERRGHDAARFRSIVHAHGWEEDVVKMVEKKHGKNDIMISFECQTLKSEQAA 132

Query: 121 EEHIRQFIPKLAGQDAV 138
           E+HIRQFIPKL GQDAV
Sbjct: 133 EDHIRQFIPKLVGQDAV 149

[Close]

BLAST of MS014507 vs. ExPASy TrEMBL
Match: A0A0A0LAZ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G516480 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 7.3e-66
Identity = 122/137 (89.05%), Postives = 132/137 (96.35%), Query Frame = 0


Query: 1   MAMEGVASIALLPCGSVSGHFIQLPHSICYGLHGTELECERECSRGEDYRLIKLTITNYN 60
           MAMEGVASIALLPCGSVSGHFIQLPHSICYGLHGTELECERECSRGEDYRLIKLTITNYN
Sbjct: 1   MAMEGVASIALLPCGSVSGHFIQLPHSICYGLHGTELECERECSRGEDYRLIKLTITNYN 60

Query: 61  NKKEQTVVVERRGHDAARFHSIEHAHGWEEDVVSLVKKKHGKNQVAISFECQTLKSEQAA 120
           NK+E+TVVVE RGHDAARFHSI HAHGWEEDVVS+V+KKHGKN++ +SFECQ LKSE+AA
Sbjct: 61  NKQERTVVVECRGHDAARFHSIVHAHGWEEDVVSMVEKKHGKNEIMVSFECQMLKSEKAA 120

Query: 121 EEHIRQFIPKLAGQDAV 138
           E+HIRQF+PKL GQDAV
Sbjct: 121 EDHIRQFMPKLVGQDAV 137

[Close]

BLAST of MS014507 vs. TAIR 10
Match: AT3G29280.1 (unknown protein; Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 229.2 bits (583), Expect = 2.0e-60
Identity = 104/134 (77.61%), Postives = 123/134 (91.79%), Query Frame = 0


Query: 4   EGVASIALLPCGSVSGHFIQLPHSICYGLHGTELECERECSRGEDYRLIKLTITNYNNKK 63
           EGVASIALLPCG++SGHFIQ+P SICYGLHGTEL CE ECSRGEDYRLIKLTI +YN KK
Sbjct: 23  EGVASIALLPCGTISGHFIQMPSSICYGLHGTELACETECSRGEDYRLIKLTIIDYNRKK 82

Query: 64  EQTVVVERRGHDAARFHSIEHAHGWEEDVVSLVKKKHGKNQVAISFECQTLKSEQAAEEH 123
           EQTVVVE +GHDAAR + +EHAHGWEEDV+ LV++KHGK +V++SFEC+TLK+++AAE+H
Sbjct: 83  EQTVVVECKGHDAARINDVEHAHGWEEDVIGLVEEKHGKKKVSVSFECETLKADEAAEDH 142

Query: 124 IRQFIPKLAGQDAV 138
           IRQF+PKLAG DAV
Sbjct: 143 IRQFMPKLAGLDAV 156

The following BLAST results are available for this feature:

BLAST of MS014507 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144426.1	2.2e-72	100.00	uncharacterized protein LOC111014113 isoform X1 [Momordica charantia]	[more]
XP_022144427.1	2.2e-72	100.00	uncharacterized protein LOC111014113 isoform X2 [Momordica charantia]	[more]
KAG7018156.1	1.4e-66	90.51	hypothetical protein SDJN02_20024 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023515562.1	1.2e-65	89.78	uncharacterized protein LOC111779684 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022930568.1	1.2e-65	89.78	uncharacterized protein LOC111436977 isoform X1 [Cucurbita moschata]	[more]

BLAST of MS014507 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS014507 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CTN4	1.1e-72	100.00	uncharacterized protein LOC111014113 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CTD5	1.1e-72	100.00	uncharacterized protein LOC111014113 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1ERU0	5.6e-66	89.78	uncharacterized protein LOC111436977 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1EVL3	5.6e-66	89.78	uncharacterized protein LOC111436977 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A0A0LAZ2	7.3e-66	89.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G516480 PE=4 SV=1	[more]

BLAST of MS014507 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G29280.1	2.0e-60	77.61	unknown protein; Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37738	OS03G0209700 PROTEIN	coord: 2..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS014507.1	MS014507.1	mRNA