MS014378 (gene) Bitter gourd (TR) v1

Overview
NameMS014378
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionAAI domain-containing protein
Locationscaffold19: 455309 .. 455605 (+)
RNA-Seq ExpressionMS014378
SyntenyMS014378
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAGAGGTCATAAGGTGGTGGCTATGGCATTGGTGTTGATAGTTGCTTTAGGTTGGGGTGAAGCTCAGACCCTATGCAACATGTCGATTGTTGGTTTGTATGCATGCAGGCCGTCGGTGACGCCTCCGAACCCGACGCCTCCGAGCGCCAACTGCTGTACAGCGCTCTCGCACGCCGATTTGCACTGCTTTTGCGCGTACCGGAACTCGGGAGCTCTTCCTTCTCTTGGCATTGACCCTAATCTTGCCTTGAAGCTGCCTGAGAAATGCAAGCTTCCCAACTCTCCAAATTGC

mRNA sequence

ATGGACAGAGGTCATAAGGTGGTGGCTATGGCATTGGTGTTGATAGTTGCTTTAGGTTGGGGTGAAGCTCAGACCCTATGCAACATGTCGATTGTTGGTTTGTATGCATGCAGGCCGTCGGTGACGCCTCCGAACCCGACGCCTCCGAGCGCCAACTGCTGTACAGCGCTCTCGCACGCCGATTTGCACTGCTTTTGCGCGTACCGGAACTCGGGAGCTCTTCCTTCTCTTGGCATTGACCCTAATCTTGCCTTGAAGCTGCCTGAGAAATGCAAGCTTCCCAACTCTCCAAATTGC

Coding sequence (CDS)

ATGGACAGAGGTCATAAGGTGGTGGCTATGGCATTGGTGTTGATAGTTGCTTTAGGTTGGGGTGAAGCTCAGACCCTATGCAACATGTCGATTGTTGGTTTGTATGCATGCAGGCCGTCGGTGACGCCTCCGAACCCGACGCCTCCGAGCGCCAACTGCTGTACAGCGCTCTCGCACGCCGATTTGCACTGCTTTTGCGCGTACCGGAACTCGGGAGCTCTTCCTTCTCTTGGCATTGACCCTAATCTTGCCTTGAAGCTGCCTGAGAAATGCAAGCTTCCCAACTCTCCAAATTGC

Protein sequence

MDRGHKVVAMALVLIVALGWGEAQTLCNMSIVGLYACRPSVTPPNPTPPSANCCTALSHADLHCFCAYRNSGALPSLGIDPNLALKLPEKCKLPNSPNC
Homology
BLAST of MS014378 vs. NCBI nr
Match: XP_022138173.1 (putative lipid-transfer protein DIR1 [Momordica charantia])

HSP 1 Score: 211.8 bits (538), Expect = 2.6e-51
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0

Query: 1   MDRGHKVVAMALVLIVALGWGEAQTLCNMSIVGLYACRPSVTPPNPTPPSANCCTALSHA 60
           MDRGHKVVAMALVLIVALGWGEAQTLCNMSIVGLYACRPSVTPPNPTPPSANCCTALSHA
Sbjct: 1   MDRGHKVVAMALVLIVALGWGEAQTLCNMSIVGLYACRPSVTPPNPTPPSANCCTALSHA 60

Query: 61  DLHCFCAYRNSGALPSLGIDPNLALKLPEKCKLPNSPNC 100
           DLHCFCAYRNSGALPSLGIDPNLALKLPEKCKLPNSPNC
Sbjct: 61  DLHCFCAYRNSGALPSLGIDPNLALKLPEKCKLPNSPNC 99

BLAST of MS014378 vs. NCBI nr
Match: XP_038898435.1 (putative lipid-transfer protein DIR1 [Benincasa hispida])

HSP 1 Score: 174.5 bits (441), Expect = 4.6e-40
Identity = 79/99 (79.80%), Postives = 90/99 (90.91%), Query Frame = 0

Query: 1   MDRGHKVVAMALVLIVALGWGEAQTLCNMSIVGLYACRPSVTPPNPTPPSANCCTALSHA 60
           MD+  KVVA+ALVL+V +G+GEAQT+CNM+  GLYACRPSVTPPNPTPP+A CC ALSHA
Sbjct: 1   MDKAIKVVALALVLMVVIGFGEAQTICNMTYAGLYACRPSVTPPNPTPPTARCCMALSHA 60

Query: 61  DLHCFCAYRNSGALPSLGIDPNLALKLPEKCKLPNSPNC 100
           DLHCFCAYRNSGAL SLGIDPNLA++LP+ CKLPNSPNC
Sbjct: 61  DLHCFCAYRNSGALSSLGIDPNLAMQLPKICKLPNSPNC 99

BLAST of MS014378 vs. NCBI nr
Match: XP_022979997.1 (putative lipid-transfer protein DIR1 [Cucurbita maxima])

HSP 1 Score: 169.9 bits (429), Expect = 1.1e-38
Identity = 74/99 (74.75%), Postives = 87/99 (87.88%), Query Frame = 0

Query: 1   MDRGHKVVAMALVLIVALGWGEAQTLCNMSIVGLYACRPSVTPPNPTPPSANCCTALSHA 60
           MDR  + VA+ALVL+  +G GEAQT+CNM + GLYACRP+VTPPNPTPP+A CC ALS A
Sbjct: 1   MDRAMRAVALALVLMTVMGLGEAQTICNMPVAGLYACRPAVTPPNPTPPNAQCCMALSQA 60

Query: 61  DLHCFCAYRNSGALPSLGIDPNLALKLPEKCKLPNSPNC 100
           DLHCFC+YRNSGALPSLG+DPNLA++LP+KC LPNSPNC
Sbjct: 61  DLHCFCSYRNSGALPSLGVDPNLAMQLPKKCNLPNSPNC 99

BLAST of MS014378 vs. NCBI nr
Match: XP_022955375.1 (putative lipid-transfer protein DIR1 [Cucurbita moschata] >XP_023526472.1 putative lipid-transfer protein DIR1 [Cucurbita pepo subsp. pepo] >KAG6582085.1 putative lipid-transfer protein DIR1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 167.9 bits (424), Expect = 4.3e-38
Identity = 73/99 (73.74%), Postives = 87/99 (87.88%), Query Frame = 0

Query: 1   MDRGHKVVAMALVLIVALGWGEAQTLCNMSIVGLYACRPSVTPPNPTPPSANCCTALSHA 60
           MDR  + VA+ALVL+  +G GEAQT+CNM + GLYACRP+VTPPNPTPP+A CC ALS A
Sbjct: 1   MDRAMRAVALALVLMAVMGLGEAQTICNMPVAGLYACRPAVTPPNPTPPNAQCCMALSQA 60

Query: 61  DLHCFCAYRNSGALPSLGIDPNLALKLPEKCKLPNSPNC 100
           +LHCFC+YRNSGALPSLG+DPNLA++LP+KC LPNSPNC
Sbjct: 61  NLHCFCSYRNSGALPSLGVDPNLAMQLPKKCNLPNSPNC 99

BLAST of MS014378 vs. NCBI nr
Match: NP_001295798.1 (lipopolysaccharide-binding protein precursor [Cucumis sativus] >CEG62452.1 Lipid binding/ Lipid transporter protein [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 6.4e-34
Identity = 69/101 (68.32%), Postives = 86/101 (85.15%), Query Frame = 0

Query: 1   MDRGHKVVAMALVLIVA--LGWGEAQTLCNMSIVGLYACRPSVTPPNPTPPSANCCTALS 60
           MD+  KVVA+ALVL+V   +G+G+AQ++CNM I GLYACRPSVTPPNPTPP+  CC+AL+
Sbjct: 1   MDKAMKVVALALVLMVVNNIGFGKAQSICNMPIAGLYACRPSVTPPNPTPPTTQCCSALT 60

Query: 61  HADLHCFCAYRNSGALPSLGIDPNLALKLPEKCKLPNSPNC 100
           HADLHCFCAYRNSGAL S GI+P LA++LP++C +  SPNC
Sbjct: 61  HADLHCFCAYRNSGALSSFGINPELAMELPKRCNISKSPNC 101

BLAST of MS014378 vs. ExPASy Swiss-Prot
Match: Q8W453 (Putative lipid-transfer protein DIR1 OS=Arabidopsis thaliana OX=3702 GN=DIR1 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-17
Identity = 46/95 (48.42%), Postives = 60/95 (63.16%), Query Frame = 0

Query: 7   VVAMALVLIVAL--GWGEAQTLCNMSIVGLYACRPSVTPPNPTPPSANCCTALSHADLHC 66
           +V MA+++I+A+      A  LC MS   L  C+P+V+  NPT PS  CCTAL HAD  C
Sbjct: 8   MVMMAMIVIMAMLVDTSVAIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFAC 67

Query: 67  FCAYRNSGALPSLGIDPNLALKLPEKCKLPNSPNC 100
            C Y+NS  L S G+DP LA  LP++C L N+P C
Sbjct: 68  LCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC 102

BLAST of MS014378 vs. ExPASy TrEMBL
Match: A0A6J1CC99 (putative lipid-transfer protein DIR1 OS=Momordica charantia OX=3673 GN=LOC111009409 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.3e-51
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0

Query: 1   MDRGHKVVAMALVLIVALGWGEAQTLCNMSIVGLYACRPSVTPPNPTPPSANCCTALSHA 60
           MDRGHKVVAMALVLIVALGWGEAQTLCNMSIVGLYACRPSVTPPNPTPPSANCCTALSHA
Sbjct: 1   MDRGHKVVAMALVLIVALGWGEAQTLCNMSIVGLYACRPSVTPPNPTPPSANCCTALSHA 60

Query: 61  DLHCFCAYRNSGALPSLGIDPNLALKLPEKCKLPNSPNC 100
           DLHCFCAYRNSGALPSLGIDPNLALKLPEKCKLPNSPNC
Sbjct: 61  DLHCFCAYRNSGALPSLGIDPNLALKLPEKCKLPNSPNC 99

BLAST of MS014378 vs. ExPASy TrEMBL
Match: A0A6J1IQ87 (putative lipid-transfer protein DIR1 OS=Cucurbita maxima OX=3661 GN=LOC111479523 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.5e-39
Identity = 74/99 (74.75%), Postives = 87/99 (87.88%), Query Frame = 0

Query: 1   MDRGHKVVAMALVLIVALGWGEAQTLCNMSIVGLYACRPSVTPPNPTPPSANCCTALSHA 60
           MDR  + VA+ALVL+  +G GEAQT+CNM + GLYACRP+VTPPNPTPP+A CC ALS A
Sbjct: 1   MDRAMRAVALALVLMTVMGLGEAQTICNMPVAGLYACRPAVTPPNPTPPNAQCCMALSQA 60

Query: 61  DLHCFCAYRNSGALPSLGIDPNLALKLPEKCKLPNSPNC 100
           DLHCFC+YRNSGALPSLG+DPNLA++LP+KC LPNSPNC
Sbjct: 61  DLHCFCSYRNSGALPSLGVDPNLAMQLPKKCNLPNSPNC 99

BLAST of MS014378 vs. ExPASy TrEMBL
Match: A0A6J1GUZ3 (putative lipid-transfer protein DIR1 OS=Cucurbita moschata OX=3662 GN=LOC111457423 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.1e-38
Identity = 73/99 (73.74%), Postives = 87/99 (87.88%), Query Frame = 0

Query: 1   MDRGHKVVAMALVLIVALGWGEAQTLCNMSIVGLYACRPSVTPPNPTPPSANCCTALSHA 60
           MDR  + VA+ALVL+  +G GEAQT+CNM + GLYACRP+VTPPNPTPP+A CC ALS A
Sbjct: 1   MDRAMRAVALALVLMAVMGLGEAQTICNMPVAGLYACRPAVTPPNPTPPNAQCCMALSQA 60

Query: 61  DLHCFCAYRNSGALPSLGIDPNLALKLPEKCKLPNSPNC 100
           +LHCFC+YRNSGALPSLG+DPNLA++LP+KC LPNSPNC
Sbjct: 61  NLHCFCSYRNSGALPSLGVDPNLAMQLPKKCNLPNSPNC 99

BLAST of MS014378 vs. ExPASy TrEMBL
Match: A0A0A0KZ41 (AAI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G017140 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.1e-34
Identity = 70/101 (69.31%), Postives = 86/101 (85.15%), Query Frame = 0

Query: 1   MDRGHKVVAMALVLIVA--LGWGEAQTLCNMSIVGLYACRPSVTPPNPTPPSANCCTALS 60
           MD+  KVVA+ALVL+V   +G+GEAQ++CNM I GLYACRPSVTPPNPTPP+  CC+AL+
Sbjct: 1   MDKAMKVVALALVLMVVNNIGFGEAQSICNMPIAGLYACRPSVTPPNPTPPTTQCCSALT 60

Query: 61  HADLHCFCAYRNSGALPSLGIDPNLALKLPEKCKLPNSPNC 100
           HADLHCFCAYRNSGAL S GI+P LA++LP++C +  SPNC
Sbjct: 61  HADLHCFCAYRNSGALSSFGINPELAMELPKRCNISKSPNC 101

BLAST of MS014378 vs. ExPASy TrEMBL
Match: A0A0A1IXE5 (Lipid binding/ Lipid transporter protein OS=Cucumis sativus OX=3659 GN=LBP PE=2 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.1e-34
Identity = 69/101 (68.32%), Postives = 86/101 (85.15%), Query Frame = 0

Query: 1   MDRGHKVVAMALVLIVA--LGWGEAQTLCNMSIVGLYACRPSVTPPNPTPPSANCCTALS 60
           MD+  KVVA+ALVL+V   +G+G+AQ++CNM I GLYACRPSVTPPNPTPP+  CC+AL+
Sbjct: 1   MDKAMKVVALALVLMVVNNIGFGKAQSICNMPIAGLYACRPSVTPPNPTPPTTQCCSALT 60

Query: 61  HADLHCFCAYRNSGALPSLGIDPNLALKLPEKCKLPNSPNC 100
           HADLHCFCAYRNSGAL S GI+P LA++LP++C +  SPNC
Sbjct: 61  HADLHCFCAYRNSGALSSFGINPELAMELPKRCNISKSPNC 101

BLAST of MS014378 vs. TAIR 10
Match: AT5G48485.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 90.5 bits (223), Expect = 8.1e-19
Identity = 46/95 (48.42%), Postives = 60/95 (63.16%), Query Frame = 0

Query: 7   VVAMALVLIVAL--GWGEAQTLCNMSIVGLYACRPSVTPPNPTPPSANCCTALSHADLHC 66
           +V MA+++I+A+      A  LC MS   L  C+P+V+  NPT PS  CCTAL HAD  C
Sbjct: 8   MVMMAMIVIMAMLVDTSVAIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFAC 67

Query: 67  FCAYRNSGALPSLGIDPNLALKLPEKCKLPNSPNC 100
            C Y+NS  L S G+DP LA  LP++C L N+P C
Sbjct: 68  LCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC 102

BLAST of MS014378 vs. TAIR 10
Match: AT5G48490.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 85.5 bits (210), Expect = 2.6e-17
Identity = 44/97 (45.36%), Postives = 57/97 (58.76%), Query Frame = 0

Query: 6   KVVAMALVLIVA---LGWGEAQTLCNMSIVGLYACRPSVTPPNPTPPSANCCTALSHADL 65
           KV  M +V+++A   +    A  LC M+   L  C P+V+  NPT PS  CC AL HAD 
Sbjct: 5   KVAIMVIVMVMASLVVERSVAIDLCGMTQAELNECLPAVSKNNPTSPSLLCCNALKHADY 64

Query: 66  HCFCAYRNSGALPSLGIDPNLALKLPEKCKLPNSPNC 100
            C C Y+NS  L S G+DP LA  LP++C L N+P C
Sbjct: 65  TCLCGYKNSPWLGSFGVDPKLASSLPKECDLTNAPTC 101

BLAST of MS014378 vs. TAIR 10
Match: AT3G52130.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 50.4 bits (119), Expect = 9.3e-07
Identity = 27/70 (38.57%), Postives = 39/70 (55.71%), Query Frame = 0

Query: 30  SIVGLYACRPSVTPPNPTPPSANCCTALSHADLHCFCAYRNSGALPSLGIDPNLALKLPE 89
           ++V L  CR +V P +P PP+  CC+A+      C C   N    P  GID ++AL+LP+
Sbjct: 55  ALVQLIPCRAAVAPFSPIPPTEICCSAVVTLGRPCLCLLANGP--PLSGIDRSMALQLPQ 114

Query: 90  KCKLPNSPNC 100
           +C   N P C
Sbjct: 115 RCS-ANFPPC 121

BLAST of MS014378 vs. TAIR 10
Match: AT3G07450.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 49.3 bits (116), Expect = 2.1e-06
Identity = 24/62 (38.71%), Postives = 32/62 (51.61%), Query Frame = 0

Query: 30 SIVGLYACRPSVTPPNPTPPSANCCTALSHADLHCFCAYRNSGALPSLGIDPNLALKLPE 89
          +++ L  CRPSV P +  PP+  CC A+      C C        P +G+D  LAL LP 
Sbjct: 39 ALIQLVPCRPSVAPFSTLPPNGLCCAAIKTLGQPCLCVLAKGP--PIVGVDRTLALHLPG 98

Query: 90 KC 92
          KC
Sbjct: 99 KC 98

BLAST of MS014378 vs. TAIR 10
Match: AT2G37870.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 42.7 bits (99), Expect = 1.9e-04
Identity = 31/100 (31.00%), Postives = 46/100 (46.00%), Query Frame = 0

Query: 6   KVVAMALV-LIVALGWGEAQTLC-----NMSIVGLYACRPSVTPPNPTPPSANCCT--AL 65
           K VA+AL+ L+++L   EA   C     N +   L  C P+   P    P   C    AL
Sbjct: 5   KFVAVALMSLLISLASVEAAGECGRMPINQAAASLSPCLPATKNPRGKVPPVCCAKVGAL 64

Query: 66  SHADLHCFCAYRNSGALPSLGIDPNLALKLPEKCKLPNSP 98
              +  C CA   S      GI+P +A+ +P++C + N P
Sbjct: 65  IRTNPRCLCAVMLSPLAKKAGINPGIAIGVPKRCNIRNRP 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022138173.12.6e-51100.00putative lipid-transfer protein DIR1 [Momordica charantia][more]
XP_038898435.14.6e-4079.80putative lipid-transfer protein DIR1 [Benincasa hispida][more]
XP_022979997.11.1e-3874.75putative lipid-transfer protein DIR1 [Cucurbita maxima][more]
XP_022955375.14.3e-3873.74putative lipid-transfer protein DIR1 [Cucurbita moschata] >XP_023526472.1 putati... [more]
NP_001295798.16.4e-3468.32lipopolysaccharide-binding protein precursor [Cucumis sativus] >CEG62452.1 Lipid... [more]
Match NameE-valueIdentityDescription
Q8W4531.1e-1748.42Putative lipid-transfer protein DIR1 OS=Arabidopsis thaliana OX=3702 GN=DIR1 PE=... [more]
Match NameE-valueIdentityDescription
A0A6J1CC991.3e-51100.00putative lipid-transfer protein DIR1 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
A0A6J1IQ875.5e-3974.75putative lipid-transfer protein DIR1 OS=Cucurbita maxima OX=3661 GN=LOC111479523... [more]
A0A6J1GUZ32.1e-3873.74putative lipid-transfer protein DIR1 OS=Cucurbita moschata OX=3662 GN=LOC1114574... [more]
A0A0A0KZ411.1e-3469.31AAI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G017140 PE=4 SV... [more]
A0A0A1IXE53.1e-3468.32Lipid binding/ Lipid transporter protein OS=Cucumis sativus OX=3659 GN=LBP PE=2 ... [more]
Match NameE-valueIdentityDescription
AT5G48485.18.1e-1948.42Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... [more]
AT5G48490.12.6e-1745.36Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... [more]
AT3G52130.19.3e-0738.57Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... [more]
AT3G07450.12.1e-0638.71Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... [more]
AT2G37870.11.9e-0431.00Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainSMARTSM00499aai_6coord: 27..99
e-value: 3.6E-4
score: 29.9
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainPFAMPF14368LTP_2coord: 19..99
e-value: 2.9E-12
score: 46.6
IPR036312Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamilyGENE3D1.10.110.10coord: 24..99
e-value: 2.3E-21
score: 77.4
IPR036312Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamilySUPERFAMILY47699Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumincoord: 27..98
NoneNo IPR availablePANTHERPTHR33122:SF63BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEINcoord: 7..99
IPR039265Putative lipid-transfer protein DIR1-likePANTHERPTHR33122LIPID BINDING PROTEIN-RELATEDcoord: 7..99
IPR044741Non-specific lipid-transfer protein-likeCDDcd04660nsLTP_likecoord: 27..97
e-value: 7.59575E-18
score: 69.3202

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS014378.1MS014378.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009627 systemic acquired resistance
molecular_function GO:0005504 fatty acid binding