MS014285 (gene) Bitter gourd (TR) v1

Overview


Name	MS014285
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Histone H2A
Location	scaffold5: 1873833 .. 1874383 (+)
RNA-Seq Expression	MS014285
Synteny	MS014285

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGACCACCGGCAAGGCAAAGAAGGGCGCCGGAGGAAGAAGAGGAGGCGAGAAGAAGAAGGCAGTTTCTCGCTCCGTCAAGGCCGGCCTGCAGTTCCCCGTCGGCCGTATCGCTCGTTATCTCAAAAAAGGAAGGTACGCTCAGCGAGTCGGCACCGGCGCTCCGGTTTACTTGGCCGCAGTAATGGAGTATTTAGCCGCTGAGGTAAACAAAATAAATTAATAAAACAAAATCTCCTTCTCTTTCTCCTTCTCTTTCTCTAAGATCGCCATTGAATTGTTCTTTAATGGACGCGATTTGATTTATAGGTTTTGGAGTTGGCCGGAAATGCGGCACGAGACAACAAGAAGAACAGAATCATACCGAGGCACGTACTATTGGCGATCAGGAACGACGAAGAGCTCGGAAAATTGCTCGCCGGCGTTACAATCGCCAGTGGCGGCGTTCTTCCGAACATCAACCCGGTTCTTCTGCCGAAGAAGACGGATAAAGCCATGAAAGAACCGAAATCTCCATCGAAGGCGGCCAAGTCTCCATCGAAGGCGGCT

mRNA sequence

ATGGAGACCACCGGCAAGGCAAAGAAGGGCGCCGGAGGAAGAAGAGGAGGCGAGAAGAAGAAGGCAGTTTCTCGCTCCGTCAAGGCCGGCCTGCAGTTCCCCGTCGGCCGTATCGCTCGTTATCTCAAAAAAGGAAGGTACGCTCAGCGAGTCGGCACCGGCGCTCCGGTTTACTTGGCCGCAGTAATGGAGTATTTAGCCGCTGAGGTTTTGGAGTTGGCCGGAAATGCGGCACGAGACAACAAGAAGAACAGAATCATACCGAGGCACGTACTATTGGCGATCAGGAACGACGAAGAGCTCGGAAAATTGCTCGCCGGCGTTACAATCGCCAGTGGCGGCGTTCTTCCGAACATCAACCCGGTTCTTCTGCCGAAGAAGACGGATAAAGCCATGAAAGAACCGAAATCTCCATCGAAGGCGGCCAAGTCTCCATCGAAGGCGGCT

Coding sequence (CDS)

ATGGAGACCACCGGCAAGGCAAAGAAGGGCGCCGGAGGAAGAAGAGGAGGCGAGAAGAAGAAGGCAGTTTCTCGCTCCGTCAAGGCCGGCCTGCAGTTCCCCGTCGGCCGTATCGCTCGTTATCTCAAAAAAGGAAGGTACGCTCAGCGAGTCGGCACCGGCGCTCCGGTTTACTTGGCCGCAGTAATGGAGTATTTAGCCGCTGAGGTTTTGGAGTTGGCCGGAAATGCGGCACGAGACAACAAGAAGAACAGAATCATACCGAGGCACGTACTATTGGCGATCAGGAACGACGAAGAGCTCGGAAAATTGCTCGCCGGCGTTACAATCGCCAGTGGCGGCGTTCTTCCGAACATCAACCCGGTTCTTCTGCCGAAGAAGACGGATAAAGCCATGAAAGAACCGAAATCTCCATCGAAGGCGGCCAAGTCTCCATCGAAGGCGGCT

Protein sequence

METTGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLAAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNINPVLLPKKTDKAMKEPKSPSKAAKSPSKAA

Homology

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BLAST of MS014285 vs. NCBI nr
Match: XP_008448380.1 (PREDICTED: histone H2A [Cucumis melo])

HSP 1 Score: 268.1 bits (684), Expect = 4.6e-68
Identity = 145/149 (97.32%), Postives = 145/149 (97.32%), Query Frame = 0


Query: 1   METTGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           MET GKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA
Sbjct: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKAMKEPKSPSKAAKSPSKAA 150
           PVLLPKKTDK  KEPKSPSKA KSPSKAA
Sbjct: 121 PVLLPKKTDKGTKEPKSPSKAGKSPSKAA 149

[Close]

BLAST of MS014285 vs. NCBI nr
Match: XP_022943937.1 (histone H2A [Cucurbita moschata] >XP_023512023.1 histone H2A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 267.7 bits (683), Expect = 6.0e-68
Identity = 143/149 (95.97%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 1   METTGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           ME +GKAKKGAGGRRGGEKKK+VSRSVKAGLQFPVGRIARYLKKGRY+QRVGTGAPVYLA
Sbjct: 1   MEASGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKAMKEPKSPSKAAKSPSKAA 150
           PVLLPKKTDKA+KEPKSPSKA KSPSKAA
Sbjct: 121 PVLLPKKTDKALKEPKSPSKAGKSPSKAA 149

[Close]

BLAST of MS014285 vs. NCBI nr
Match: XP_022986957.1 (histone H2A [Cucurbita maxima])

HSP 1 Score: 266.2 bits (679), Expect = 1.8e-67
Identity = 142/149 (95.30%), Postives = 146/149 (97.99%), Query Frame = 0


Query: 1   METTGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           ME +GKAKKGAGGRRGGEKKK+VSRSVKAGLQFPVGRIARYLKKGRY+QRVGTGAPVYLA
Sbjct: 1   MEASGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKAMKEPKSPSKAAKSPSKAA 150
           PVLLPKKTDKA+KEPKSPSKA KSPSK A
Sbjct: 121 PVLLPKKTDKALKEPKSPSKAGKSPSKVA 149

[Close]

BLAST of MS014285 vs. NCBI nr
Match: XP_022148312.1 (histone H2A [Momordica charantia])

HSP 1 Score: 266.2 bits (679), Expect = 1.8e-67
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   METTGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           METTGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA
Sbjct: 1   METTGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKAMKEPKSPSKAA 143
           PVLLPKKTDKAMKEPKSPSKAA
Sbjct: 121 PVLLPKKTDKAMKEPKSPSKAA 142

[Close]

BLAST of MS014285 vs. NCBI nr
Match: XP_038900828.1 (histone H2A-like [Benincasa hispida])

HSP 1 Score: 262.3 bits (669), Expect = 2.5e-66
Identity = 141/149 (94.63%), Postives = 145/149 (97.32%), Query Frame = 0


Query: 1   METTGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           MET GKAKKGAGGRRGGEKKK+VSRSV+AGLQFPVGRIARYLK GRYA+RVGTGAPVYLA
Sbjct: 1   METGGKAKKGAGGRRGGEKKKSVSRSVRAGLQFPVGRIARYLKHGRYARRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNK+NRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKRNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKAMKEPKSPSKAAKSPSKAA 150
           PVLLPKKTDKA KEPKSPSK AKSPSKAA
Sbjct: 121 PVLLPKKTDKATKEPKSPSKGAKSPSKAA 149

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BLAST of MS014285 vs. ExPASy Swiss-Prot
Match: P19177 (Histone H2A OS=Petroselinum crispum OX=4043 PE=2 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 4.6e-63
Identity = 130/149 (87.25%), Postives = 138/149 (92.62%), Query Frame = 0


Query: 1   METTGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           MET GKAKKG GGR+GG +KK+V+RSVKAGLQFPVGRI RYLKKGRYAQRVGTGAPVYLA
Sbjct: 1   METAGKAKKGFGGRKGGPRKKSVTRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AV+EYLAAEVLELAGNAARDNKK RIIPRH+LLA+RNDEELGKLLAGVT A GGVLPNIN
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKTRIIPRHLLLAVRNDEELGKLLAGVTFAHGGVLPNIN 120

Query: 121 PVLLPKKT-DKAMKEPKSPSKAAKSPSKA 149
           PVLLPKKT +KA KEPKSPSKA KSP KA
Sbjct: 121 PVLLPKKTAEKAAKEPKSPSKAGKSPKKA 149

[Close]

BLAST of MS014285 vs. ExPASy Swiss-Prot
Match: Q2HU68 (Probable histone H2A.1 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.3e-60
Identity = 123/148 (83.11%), Postives = 134/148 (90.54%), Query Frame = 0


Query: 1   METTGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           M+ + K KKGAGGR+GG +KK+V+RS +AGLQFPVGRI RYLKKGRYAQRVGTGAPVYLA
Sbjct: 1   MDASTKTKKGAGGRKGGPRKKSVTRSTRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AV+EYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIA GGVLPNIN
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNIN 120

Query: 121 PVLLPKKTDKAMKEPKSPSKAAKSPSKA 149
           P+LLPKK +KA    KSPSKA KSP KA
Sbjct: 121 PILLPKKNEKAATTTKSPSKATKSPKKA 148

[Close]

BLAST of MS014285 vs. ExPASy Swiss-Prot
Match: Q9M531 (Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 2.4e-59
Identity = 128/153 (83.66%), Postives = 136/153 (88.89%), Query Frame = 0


Query: 1   METTGKAKKGAGGRR-GGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYL 60
           M+T  K KKGAG R+ GG KKK VSRSVKAGLQFPVGRI R+LKKGRYAQRVG+GAPVYL
Sbjct: 1   MDTGAKLKKGAGERKGGGPKKKPVSRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYL 60

Query: 61  AAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNI 120
           AAV+EYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIA GGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKTDK----AMKEPKSPSKAAKSPSKA 149
           NPVLLPKK +K    A KEPKSP+KA KSP KA
Sbjct: 121 NPVLLPKKAEKAAAAATKEPKSPAKATKSPKKA 153

[Close]

BLAST of MS014285 vs. ExPASy Swiss-Prot
Match: Q2HU65 (Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.0e-58
Identity = 125/153 (81.70%), Postives = 138/153 (90.20%), Query Frame = 0


Query: 1   METTGKAKKGAGGRR-GGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYL 60
           M+ + K KKGAGGR+ GG +KK+V+RS++AGLQFPVGRI RYLKKGRYAQRVGTGAPVYL
Sbjct: 1   MDASTKTKKGAGGRKGGGPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYL 60

Query: 61  AAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNI 120
           AAV+EYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIA GGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKTDKA---MKEPKSPS-KAAKSPSKA 149
           NPVLLPKKT+++    KEPKSP  KA KSP KA
Sbjct: 121 NPVLLPKKTERSNTVSKEPKSPKPKAGKSPKKA 153

[Close]

BLAST of MS014285 vs. ExPASy Swiss-Prot
Match: P40281 (Histone H2A.2 OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 5.9e-58
Identity = 121/149 (81.21%), Postives = 134/149 (89.93%), Query Frame = 0


Query: 1   METTGKAKKGAGGRR-GGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYL 60
           M+ + K KKGAGGR+ GG +KKAV+RSV+AGLQFPVGRI R+LKKGRYAQRVGTGAPVYL
Sbjct: 1   MDASTKVKKGAGGRKGGGPRKKAVTRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPVYL 60

Query: 61  AAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNI 120
           AAV+EYLAAEVLELAGNAARDNKKNRI PRH+LLA+RND ELGKLLAGVTIA GGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRISPRHLLLAVRNDVELGKLLAGVTIAYGGVLPNI 120

Query: 121 NPVLLPKKTDKAMKEPKSPSKAAKSPSKA 149
           NPVLLPK+T+ A   PKSPSKA K+P KA
Sbjct: 121 NPVLLPKRTESAASAPKSPSKAKKTPKKA 149

[Close]

BLAST of MS014285 vs. ExPASy TrEMBL
Match: A0A1S3BK65 (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103490586 PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.2e-68
Identity = 145/149 (97.32%), Postives = 145/149 (97.32%), Query Frame = 0


Query: 1   METTGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           MET GKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA
Sbjct: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKAMKEPKSPSKAAKSPSKAA 150
           PVLLPKKTDK  KEPKSPSKA KSPSKAA
Sbjct: 121 PVLLPKKTDKGTKEPKSPSKAGKSPSKAA 149

[Close]

BLAST of MS014285 vs. ExPASy TrEMBL
Match: A0A6J1FUE6 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111448508 PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 2.9e-68
Identity = 143/149 (95.97%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 1   METTGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           ME +GKAKKGAGGRRGGEKKK+VSRSVKAGLQFPVGRIARYLKKGRY+QRVGTGAPVYLA
Sbjct: 1   MEASGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKAMKEPKSPSKAAKSPSKAA 150
           PVLLPKKTDKA+KEPKSPSKA KSPSKAA
Sbjct: 121 PVLLPKKTDKALKEPKSPSKAGKSPSKAA 149

[Close]

BLAST of MS014285 vs. ExPASy TrEMBL
Match: A0A6J1J904 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111484538 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 8.5e-68
Identity = 142/149 (95.30%), Postives = 146/149 (97.99%), Query Frame = 0


Query: 1   METTGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           ME +GKAKKGAGGRRGGEKKK+VSRSVKAGLQFPVGRIARYLKKGRY+QRVGTGAPVYLA
Sbjct: 1   MEASGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKAMKEPKSPSKAAKSPSKAA 150
           PVLLPKKTDKA+KEPKSPSKA KSPSK A
Sbjct: 121 PVLLPKKTDKALKEPKSPSKAGKSPSKVA 149

[Close]

BLAST of MS014285 vs. ExPASy TrEMBL
Match: A0A6J1D4R0 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111016995 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 8.5e-68
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   METTGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           METTGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA
Sbjct: 1   METTGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKAMKEPKSPSKAA 143
           PVLLPKKTDKAMKEPKSPSKAA
Sbjct: 121 PVLLPKKTDKAMKEPKSPSKAA 142

[Close]

BLAST of MS014285 vs. ExPASy TrEMBL
Match: A0A6J1L1N2 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111499596 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 3.6e-66
Identity = 138/149 (92.62%), Postives = 145/149 (97.32%), Query Frame = 0


Query: 1   METTGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           ME + KAKKGAGGRRGGEKKK+VSRSVKAGLQFPVGRIARYLKKGRY+QRVGTGAPVYLA
Sbjct: 1   MEASAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKAMKEPKSPSKAAKSPSKAA 150
           P+LLPKKTDKA+KEPKSPSK  KSPSK++
Sbjct: 121 PILLPKKTDKAVKEPKSPSKGGKSPSKSS 149

[Close]

BLAST of MS014285 vs. TAIR 10
Match: AT5G02560.1 (histone H2A 12 )

HSP 1 Score: 222.2 bits (565), Expect = 2.7e-58
Identity = 123/153 (80.39%), Postives = 134/153 (87.58%), Query Frame = 0


Query: 1   METTGKAKKGAGGRR--GGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVY 60
           M++  K KKGA GRR  GG KKK VSRSVK+GLQFPVGRI RYLKKGRY++RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPN 120
           LAAV+EYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELG LL GVTIA GGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 120

Query: 121 INPVLLPKKTDKA---MKEPKSPSKAAKSPSKA 149
           INP+LLPKK++KA    K PKSPSKA KSP K+
Sbjct: 121 INPILLPKKSEKAASTTKTPKSPSKATKSPKKS 153

[Close]

BLAST of MS014285 vs. TAIR 10
Match: AT5G02560.2 (histone H2A 12 )

HSP 1 Score: 208.8 bits (530), Expect = 3.1e-54
Identity = 123/177 (69.49%), Postives = 134/177 (75.71%), Query Frame = 0


Query: 1   METTGKAKKGAGGRR--GGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVY 60
           M++  K KKGA GRR  GG KKK VSRSVK+GLQFPVGRI RYLKKGRY++RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVMEYLAAE------------------------VLELAGNAARDNKKNRIIPRHVLLA 120
           LAAV+EYLAAE                        VLELAGNAARDNKKNRIIPRHVLLA
Sbjct: 61  LAAVLEYLAAENSCGFCSVASLTIYRCRMSSSDFRVLELAGNAARDNKKNRIIPRHVLLA 120

Query: 121 IRNDEELGKLLAGVTIASGGVLPNINPVLLPKKTDKA---MKEPKSPSKAAKSPSKA 149
           +RNDEELG LL GVTIA GGVLPNINP+LLPKK++KA    K PKSPSKA KSP K+
Sbjct: 121 VRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAASTTKTPKSPSKATKSPKKS 177

[Close]

BLAST of MS014285 vs. TAIR 10
Match: AT5G27670.1 (histone H2A 7 )

HSP 1 Score: 207.2 bits (526), Expect = 9.0e-54
Identity = 113/147 (76.87%), Postives = 128/147 (87.07%), Query Frame = 0


Query: 2   ETTGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLAA 61
           + T K  +GAGGR+GG++KK+VS+SVKAGLQFPVGRIARYLKKGRYA R G+GAPVYLAA
Sbjct: 5   QATTKPTRGAGGRKGGDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAA 64

Query: 62  VMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNINP 121
           V+EYLAAEVLELAGNAARDNKKNRI PRH+ LAIRNDEELG+LL GVTIASGGVLPNINP
Sbjct: 65  VLEYLAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINP 124

Query: 122 VLLPKKTDKAMKEPKSPSKAAKSPSKA 149
           VLLPKK+  +  + +  S A KSP KA
Sbjct: 125 VLLPKKSTASSSQAEKAS-ATKSPKKA 150

[Close]

BLAST of MS014285 vs. TAIR 10
Match: AT5G59870.1 (histone H2A 6 )

HSP 1 Score: 202.6 bits (514), Expect = 2.2e-52
Identity = 112/150 (74.67%), Postives = 126/150 (84.00%), Query Frame = 0


Query: 1   METTGKAKKGAGGRR--GGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVY 60
           ME+TGK KK  GGR+  G  K K+VS+S+KAGLQFPVGRI R+LKKGRYAQR+G GAPVY
Sbjct: 1   MESTGKVKKAFGGRKPPGAPKTKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVY 60

Query: 61  LAAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPN 120
           +AAV+EYLAAEVLELAGNAARDNKK+RIIPRH+LLAIRNDEELGKLL+GVTIA GGVLPN
Sbjct: 61  MAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPN 120

Query: 121 INPVLLPKKTDKAMKEPKSPSKAAKSPSKA 149
           IN VLLPKK+     E K+     KSP KA
Sbjct: 121 INSVLLPKKSATKPAEEKATKSPVKSPKKA 150

[Close]

BLAST of MS014285 vs. TAIR 10
Match: AT1G51060.1 (histone H2A 10 )

HSP 1 Score: 177.6 bits (449), Expect = 7.6e-45
Identity = 89/112 (79.46%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 17  GEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLAAVMEYLAAEVLELAGN 76
           G  KKA +RS KAGLQFPVGRIAR+LKKG+YA+RVG GAPVYLAAV+EYLAAEVLELAGN
Sbjct: 11  GSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAAEVLELAGN 70

Query: 77  AARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNINPVLLPKKT 129
           AARDNKK RI+PRH+ LA+RNDEEL KLL  VTIA+GGV+PNI+ +LLPKKT
Sbjct: 71  AARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 122

The following BLAST results are available for this feature:

BLAST of MS014285 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448380.1	4.6e-68	97.32	PREDICTED: histone H2A [Cucumis melo]	[more]
XP_022943937.1	6.0e-68	95.97	histone H2A [Cucurbita moschata] >XP_023512023.1 histone H2A [Cucurbita pepo sub...	[more]
XP_022986957.1	1.8e-67	95.30	histone H2A [Cucurbita maxima]	[more]
XP_022148312.1	1.8e-67	100.00	histone H2A [Momordica charantia]	[more]
XP_038900828.1	2.5e-66	94.63	histone H2A-like [Benincasa hispida]	[more]

BLAST of MS014285 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19177	4.6e-63	87.25	Histone H2A OS=Petroselinum crispum OX=4043 PE=2 SV=1	[more]
Q2HU68	1.3e-60	83.11	Probable histone H2A.1 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g1v1 P...	[more]
Q9M531	2.4e-59	83.66	Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1	[more]
Q2HU65	2.0e-58	81.70	Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 P...	[more]
P40281	5.9e-58	81.21	Histone H2A.2 OS=Pisum sativum OX=3888 PE=2 SV=1	[more]

BLAST of MS014285 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BK65	2.2e-68	97.32	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103490586 PE=3 SV=1	[more]
A0A6J1FUE6	2.9e-68	95.97	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111448508 PE=3 SV=1	[more]
A0A6J1J904	8.5e-68	95.30	Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111484538 PE=3 SV=1	[more]
A0A6J1D4R0	8.5e-68	100.00	Histone H2A OS=Momordica charantia OX=3673 GN=LOC111016995 PE=3 SV=1	[more]
A0A6J1L1N2	3.6e-66	92.62	Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111499596 PE=3 SV=1	[more]

BLAST of MS014285 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02560.1	2.7e-58	80.39	histone H2A 12	[more]
AT5G02560.2	3.1e-54	69.49	histone H2A 12	[more]
AT5G27670.1	9.0e-54	76.87	histone H2A 7	[more]
AT5G59870.1	2.2e-52	74.67	histone H2A 6	[more]
AT1G51060.1	7.6e-45	79.46	histone H2A 10	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 50..65 score: 81.37 coord: 65..78 score: 89.46 coord: 21..43 score: 71.22 coord: 79..93 score: 73.78 coord: 107..125 score: 76.19
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 10..130 e-value: 2.0E-79 score: 279.9
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 19..127 e-value: 4.16291E-67 score: 197.172
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 99..131 e-value: 8.8E-19 score: 67.0
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 8..137 e-value: 1.7E-64 score: 217.4
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 24..127
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 15..96 e-value: 9.0E-14 score: 52.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..149
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 8..143
None	No IPR available	PANTHER	PTHR23430:SF304	HISTONE H2A	coord: 8..143
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 29..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS014285.1	MS014285.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000786	nucleosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity