MS014281 (gene) Bitter gourd (TR) v1

Overview


Name	MS014281
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	THO complex subunit 4A-like
Location	scaffold5: 1857486 .. 1859047 (-)
RNA-Seq Expression	MS014281
Synteny	MS014281

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCTCCTCTGGATATGAGCCTCGACGATATCATAAAGAACAACAAAAAATCCAGATCCGGAAATTCCAGAGGTGGTCGCGGCCGACCTTCCGGACCCGGTCCCGTCCGCCGATTTCCCAATCGTGCCGCTAATCGCACGCCTTATGCCGCACCCAAGGTATGGCTTCGAGTTCTAGGTCGCTGTATCTCCTCTTTTCCCTTTCGAATTTTTTTTTTAATTTTTGTTTTGATTTGTGAATCTTGCGATAGGCACCGGAAACGGCTTGGCAGCATGATATGTTTATCGATCAGACTTCTGGATTCGCTGTGCAAGCGGGGCGAGCCTCTGCCATTCAGACTGGGACTAAGCTTTACATATCTAATTTGGATTACGGCGTTTCCAATGAAGATATCAAGGTATTTATTACTTTTGTGAATGAATAAAAAGAGAGGAGAGATAGATAGTTTCTTTTTGCCTACTGAAAGTGGTGGTGCTTACAGGAACTTTTTTCAGAAGTTGGTGATATGAAACGCTACTCAATCCATTATGATAAGAGTGGAAGATCCAAGGTATCCTACGAAGCCTGGCATAATACTGGTTCTTGTGAATTCATTATATTGGTCGAAGTTTAGAAGTCCTCTTTTCCATAGGGAACGGCAGAAGTAGTTTTCTCACGACGAGTAGATGCTGTTGCGGCTGTCAAGAAGTACAACAACGTGCAGCTTGATGGAAAACCAATGAAGATAGAGATTGTTGGAACTAATATTGCGACCCCTGCTGCTGTTCCTACTGCCGCTGTAGCCCCCTTCGAAAATTTAAACGGGTTTCCTAGAAGGTACTGGATCTTATTCTAAGTGGCAGAAAATAGGGCATGAGTGATCTGCTTGATGAATATAATTGGCTGCAAGCACTAACACAATGCTCCAAAACTTATTATGAATCGCAAGTTGTGTTCGTATGTCATGTGATATTTGCTGTTTTTAGTTTCTATAAAGCCTTTGTTGATATAACTATTAATATTTTCCTTGTATTCACGAGCTTTTGTTCTGCTTTTATAACTATTAATATTTGCTGTTTTTAGTTTCTATAAAGCCTTTGTTCCTATAACTATTAATATTTTCCTTGTATTCACGAGCTTTTGTTCTGTTTTTAAGAATCTCCACTGCAGCCTGCCCATGGCTGCTACTTAATGTATCTAGTACATTTTAGGTTGTAATATGCTATTGTATTTCTAGTCTTGAAATCTGCCTCTAGGCTCATTATGCACTTGTATATATTTATAAACTTTATTCTGGTTCTTTTTTATTTTCAGCTGTGTTTGCTTGATTCTGGTGGCATTCATTTTATAATTAGCAGTGCCATTGGCTATGTCATTGTATATCGTATGAACATTGTTTTTGACGTGGAACAGGCAGCAAGGTAGGGGTGGTCTGCCATCACGTCAACGTGGCGGAGGCGGAGGAGGTCGTGGTTTTGGAAGAGGGCGTGGGAGAGGAAGAGGTCCCAGTGAAAAAGTTTCTGCCGAAGATCTTGATGCGGACTTAGAGAAGTATCATGCCGAATCTATGCAAATAAAT

mRNA sequence

ATGGCTGCTCCTCTGGATATGAGCCTCGACGATATCATAAAGAACAACAAAAAATCCAGATCCGGAAATTCCAGAGGTGGTCGCGGCCGACCTTCCGGACCCGGTCCCGTCCGCCGATTTCCCAATCGTGCCGCTAATCGCACGCCTTATGCCGCACCCAAGGCACCGGAAACGGCTTGGCAGCATGATATGTTTATCGATCAGACTTCTGGATTCGCTGTGCAAGCGGGGCGAGCCTCTGCCATTCAGACTGGGACTAAGCTTTACATATCTAATTTGGATTACGGCGTTTCCAATGAAGATATCAAGGAACTTTTTTCAGAAGTTGGTGATATGAAACGCTACTCAATCCATTATGATAAGAGTGGAAGATCCAAGGGAACGGCAGAAGTAGTTTTCTCACGACGAGTAGATGCTGTTGCGGCTGTCAAGAAGTACAACAACGTGCAGCTTGATGGAAAACCAATGAAGATAGAGATTGTTGGAACTAATATTGCGACCCCTGCTGCTGTTCCTACTGCCGCTGTAGCCCCCTTCGAAAATTTAAACGGGTTTCCTAGAAGGCAGCAAGGTAGGGGTGGTCTGCCATCACGTCAACGTGGCGGAGGCGGAGGAGGTCGTGGTTTTGGAAGAGGGCGTGGGAGAGGAAGAGGTCCCAGTGAAAAAGTTTCTGCCGAAGATCTTGATGCGGACTTAGAGAAGTATCATGCCGAATCTATGCAAATAAAT

Coding sequence (CDS)

ATGGCTGCTCCTCTGGATATGAGCCTCGACGATATCATAAAGAACAACAAAAAATCCAGATCCGGAAATTCCAGAGGTGGTCGCGGCCGACCTTCCGGACCCGGTCCCGTCCGCCGATTTCCCAATCGTGCCGCTAATCGCACGCCTTATGCCGCACCCAAGGCACCGGAAACGGCTTGGCAGCATGATATGTTTATCGATCAGACTTCTGGATTCGCTGTGCAAGCGGGGCGAGCCTCTGCCATTCAGACTGGGACTAAGCTTTACATATCTAATTTGGATTACGGCGTTTCCAATGAAGATATCAAGGAACTTTTTTCAGAAGTTGGTGATATGAAACGCTACTCAATCCATTATGATAAGAGTGGAAGATCCAAGGGAACGGCAGAAGTAGTTTTCTCACGACGAGTAGATGCTGTTGCGGCTGTCAAGAAGTACAACAACGTGCAGCTTGATGGAAAACCAATGAAGATAGAGATTGTTGGAACTAATATTGCGACCCCTGCTGCTGTTCCTACTGCCGCTGTAGCCCCCTTCGAAAATTTAAACGGGTTTCCTAGAAGGCAGCAAGGTAGGGGTGGTCTGCCATCACGTCAACGTGGCGGAGGCGGAGGAGGTCGTGGTTTTGGAAGAGGGCGTGGGAGAGGAAGAGGTCCCAGTGAAAAAGTTTCTGCCGAAGATCTTGATGCGGACTTAGAGAAGTATCATGCCGAATCTATGCAAATAAAT

Protein sequence

MAAPLDMSLDDIIKNNKKSRSGNSRGGRGRPSGPGPVRRFPNRAANRTPYAAPKAPETAWQHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYSIHYDKSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAVAPFENLNGFPRRQQGRGGLPSRQRGGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN

Homology

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BLAST of MS014281 vs. NCBI nr
Match: XP_022148377.1 (THO complex subunit 4A-like [Momordica charantia])

HSP 1 Score: 469.2 bits (1206), Expect = 2.2e-128
Identity = 242/243 (99.59%), Postives = 242/243 (99.59%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGGRGRPSGPGPVRRFPNRAANRTPYAAPKAPETAW 60
           MAAPLDMSLDDIIKNNKKSRSGNSRGGRGRPSGPGPVRRFPNRAANRTPYAAPKAPETAW
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGGRGRPSGPGPVRRFPNRAANRTPYAAPKAPETAW 60

Query: 61  QHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYSIHYD 120
           QHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMK YSIHYD
Sbjct: 61  QHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKHYSIHYD 120

Query: 121 KSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAVAPFE 180
           KSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAVAPFE
Sbjct: 121 KSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAVAPFE 180

Query: 181 NLNGFPRRQQGRGGLPSRQRGGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESM 240
           NLNGFPRRQQGRGGLPSRQRGGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESM
Sbjct: 181 NLNGFPRRQQGRGGLPSRQRGGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESM 240

Query: 241 QIN 244
           QIN
Sbjct: 241 QIN 243

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BLAST of MS014281 vs. NCBI nr
Match: XP_038901991.1 (THO complex subunit 4A-like [Benincasa hispida])

HSP 1 Score: 417.9 bits (1073), Expect = 5.9e-113
Identity = 221/243 (90.95%), Postives = 224/243 (92.18%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGGRGRPSGPGPVRRFPNRAANRTPYAAPKAPETAW 60
           MAAPLDMSLDDIIKNNKKSRSGNSR GRGR SGPGPVRRFPNRAANRTPY+APKAPET W
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSR-GRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTW 60

Query: 61  QHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYSIHYD 120
           QHDMF D  SGFA Q GRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRY IHYD
Sbjct: 61  QHDMFADPGSGFAGQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYD 120

Query: 121 KSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAVAPFE 180
           KSGRSKGTAEVVFSRR+DAVAAVKKYNNVQLDGKPMKIEIVGTNI+TPA  PTAAV PFE
Sbjct: 121 KSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFE 180

Query: 181 NLNGFPRRQQGRGGLPSRQRGGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESM 240
           NLNG PRRQQGRGG PSRQR     GRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESM
Sbjct: 181 NLNGAPRRQQGRGGPPSRQR-----GRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESM 237

Query: 241 QIN 244
           QIN
Sbjct: 241 QIN 237

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BLAST of MS014281 vs. NCBI nr
Match: XP_004143092.1 (THO complex subunit 4A [Cucumis sativus] >KGN47175.1 hypothetical protein Csa_020836 [Cucumis sativus])

HSP 1 Score: 413.7 bits (1062), Expect = 1.1e-111
Identity = 218/243 (89.71%), Postives = 223/243 (91.77%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGGRGRPSGPGPVRRFPNRAANRTPYAAPKAPETAW 60
           MAAPLDMSLDDIIKNNKKSRSGNSR GRGR SGPGPVRRFPNRAANRTPY+APKAPET W
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSR-GRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTW 60

Query: 61  QHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYSIHYD 120
           QHDMF D +SGF VQ GRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKR+ IHYD
Sbjct: 61  QHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYD 120

Query: 121 KSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAVAPFE 180
           KSGRSKGTAEVVFSRR+DAVAAVKKYNNVQLDGKPMKIEIVGTNI+TPA  PTAAV PFE
Sbjct: 121 KSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFE 180

Query: 181 NLNGFPRRQQGRGGLPSRQRGGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESM 240
           N NG PRRQQGRGG PSRQR     G GFGRGRGRGRGPSEKVSAEDLDADLEKYHAESM
Sbjct: 181 NSNGAPRRQQGRGGPPSRQR-----GHGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESM 237

Query: 241 QIN 244
           QIN
Sbjct: 241 QIN 237

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BLAST of MS014281 vs. NCBI nr
Match: XP_008448384.1 (PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo] >XP_008448386.1 PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo] >XP_008448387.1 PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo] >XP_016900540.1 PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo])

HSP 1 Score: 411.0 bits (1055), Expect = 7.2e-111
Identity = 217/243 (89.30%), Postives = 223/243 (91.77%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGGRGRPSGPGPVRRFPNRAANRTPYAAPKAPETAW 60
           MAAPLDMSLDDIIKNNKKSRSGNSR GRGR SGPGPVRRFPNRAA+RTPY+APKAPET W
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSR-GRGRGSGPGPVRRFPNRAASRTPYSAPKAPETTW 60

Query: 61  QHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYSIHYD 120
           QHDMF D +SGF  Q GRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKR+ IHYD
Sbjct: 61  QHDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYD 120

Query: 121 KSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAVAPFE 180
           KSGRSKGTAEVVFSRR+DAVAAVKKYNNVQLDGKPMKIEIVGTNI+TPA  PTAAV PFE
Sbjct: 121 KSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFE 180

Query: 181 NLNGFPRRQQGRGGLPSRQRGGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESM 240
           N NG PRRQQGRGG PSRQR     GRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESM
Sbjct: 181 NSNGAPRRQQGRGGPPSRQR-----GRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESM 237

Query: 241 QIN 244
           QIN
Sbjct: 241 QIN 237

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BLAST of MS014281 vs. NCBI nr
Match: XP_023006955.1 (THO complex subunit 4A-like [Cucurbita maxima])

HSP 1 Score: 408.7 bits (1049), Expect = 3.6e-110
Identity = 217/243 (89.30%), Postives = 221/243 (90.95%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGGRGRPSGPGPVRRFPNRAANRTPYAAPKAPETAW 60
           MAAPLDMSLDDIIKNNKKSRSG SR GRGR SGPGPVRR PNRAANRTPY+APKAPET W
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGISR-GRGRGSGPGPVRRIPNRAANRTPYSAPKAPETTW 60

Query: 61  QHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYSIHYD 120
           QHDMF+DQ +GF VQAGRAS+IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRY IHYD
Sbjct: 61  QHDMFVDQGAGFPVQAGRASSIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYD 120

Query: 121 KSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAVAPFE 180
           KSGRSKGTAEVVFSRR DA AAVKKYNNVQLDGKPMKIEIVGTNIAT A  P AAV PFE
Sbjct: 121 KSGRSKGTAEVVFSRRGDAAAAVKKYNNVQLDGKPMKIEIVGTNIATHAVGPPAAVNPFE 180

Query: 181 NLNGFPRRQQGRGGLPSRQRGGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESM 240
           N NG PRRQQGRGGLPSRQR    GGRG GRGRGRGRGPSEKVSAEDLDADLEKYHAESM
Sbjct: 181 NFNGVPRRQQGRGGLPSRQR----GGRGSGRGRGRGRGPSEKVSAEDLDADLEKYHAESM 238

Query: 241 QIN 244
           QIN
Sbjct: 241 QIN 238

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BLAST of MS014281 vs. ExPASy Swiss-Prot
Match: Q8L773 (THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 7.1e-69
Identity = 161/251 (64.14%), Postives = 193/251 (76.89%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSG-NSRGGRGRPSGPGPVRR-FPNRAANRT-PYAAPKAPE 60
           M+  LDMSLDD+I  N+KSR G     G G  SGPGP RR  PNR + R+ PY + KAPE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TAWQHDMFIDQTSGFAVQAGRASA-IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYS 120
           + W HDMF D++     ++GR+SA I+TGTKLYISNLDYGV NEDIKELF+EVG++KRY+
Sbjct: 61  STWGHDMFSDRSEDH--RSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 IHYDKSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAV 180
           +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T AA P+   
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQT-AAAPSGRP 180

Query: 181 APFENLNGFP-RRQQGRGGLPSRQRGG--GGGGR-GFGRGRGRGRGPSEKVSAEDLDADL 240
           A   N NG P R  QGRGG   +QRGG  GGGGR G GRGR  G+GP+EK+SAEDLDADL
Sbjct: 181 AN-GNSNGAPWRGGQGRGG---QQRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDADL 240

Query: 241 EKYHAESMQIN 244
           +KYH+  M+ N
Sbjct: 241 DKYHSGDMETN 244

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BLAST of MS014281 vs. ExPASy Swiss-Prot
Match: Q8L719 (THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 3.8e-62
Identity = 163/291 (56.01%), Postives = 186/291 (63.92%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKK---SR------SGNSRGGR-GRPSGPGPVRRFPNRAANRT-P 60
           M+  LDMSLDDIIK+N+K   SR       GN+ GGR G  S  GP RRF NR   RT P
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YAAP----KAPETAWQHDMFIDQTSGFA-------VQAGRASAIQTGTKLYISNLDYGVS 120
           Y+ P    +A +  WQ+D+F    S  A          G  S+I+TGTKLYISNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGDMKRYSIHYDKSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKI 180
           NEDIKELFSEVGD+KRY IHYD+SGRSKGTAEVVFSRR DA+AAVK+YNNVQLDGK MKI
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGTNIATPAAVPTAAVA--PF----------ENLNGFPR-------RQQGRGGLPSRQ 240
           EIVGTN++ P A+P  A A  PF          EN NG          R +GRGG   R 
Sbjct: 181 EIVGTNLSAP-ALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGRGGFMGRP 240

Query: 241 RGGGGGGRGFGRGRGR---------GRGPSEKVSAEDLDADLEKYHAESMQ 242
           RGGG GG  F  GRG          GRG  E VSAEDLDA+L+KYH E+M+
Sbjct: 241 RGGGFGGGNFRGGRGARGRGGRGSGGRGRDENVSAEDLDAELDKYHKEAME 290

[Close]

BLAST of MS014281 vs. ExPASy Swiss-Prot
Match: Q6NQ72 (THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 8.7e-43
Identity = 127/292 (43.49%), Postives = 165/292 (56.51%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGN---SRG-GRGRPS---GPGPVRRFPNRAANRTPYA-- 60
           M+  L+M+LD+I+K  K +RSG    SRG GRGR     G GP RR P  A N  P +  
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGGGGRGAGPARRGP-LAVNARPSSFT 60

Query: 61  ----APKAPETAWQHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFS 120
                 +     WQ  +F D      ++A  AS ++ GT+L+++NLD GV+NEDI+ELFS
Sbjct: 61  INKPVRRVRSLPWQSGLFED-----GLRAAGASGVEVGTRLHVTNLDQGVTNEDIRELFS 120

Query: 121 EVGDMKRYSIHYDKSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIAT 180
           E+G+++RY+IHYDK+GR  GTAEVV+ RR DA  A+KKYNNV LDG+PM++EI+G N ++
Sbjct: 121 EIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSS 180

Query: 181 PAAVPTAAVAPFENLNGFPRR----QQGRGG--------------------LP------- 240
            A +          LNG  +R    QQG GG                    LP       
Sbjct: 181 EAPLSGRVNVNVTGLNGRLKRTVVIQQGGGGRGRVRGGRGGRGPAPTVSRRLPIHNQQGG 240

[Close]

BLAST of MS014281 vs. ExPASy Swiss-Prot
Match: B5FXN8 (THO complex subunit 4 OS=Taeniopygia guttata OX=59729 GN=ALYREF PE=2 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 4.0e-40
Identity = 122/267 (45.69%), Postives = 155/267 (58.05%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGGRG--------RPSGP------------GPVRRF 60
           MA  +DMSLDDIIK N+  R G SRGGRG        R  GP            GPVR  
Sbjct: 1   MADKMDMSLDDIIKLNRSQR-GASRGGRGGRGRGGTARGGGPGRGGVGGGRAGGGPVRNR 60

Query: 61  PNRA----ANR-TPYAAPKAPETAWQHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDY 120
           P  A     NR  PY+ PK     WQHD+F    SGF   AG    ++TG KL +SNLD+
Sbjct: 61  PVMARGGGRNRPAPYSRPKQLPEKWQHDLF---DSGFGAGAG----VETGGKLLVSNLDF 120

Query: 121 GVSNEDIKELFSEVGDMKRYSIHYDKSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKP 180
           GVS+ DI+ELF+E G +K+ ++HYD+SGRS GTA+V F R+ DA+ A+K+YN V LDG+P
Sbjct: 121 GVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRP 180

Query: 181 MKIEIVGTNIATPAAVPTAAVAPFENLNGFPRRQQGRGGLPSRQRGGGGGGRGF-----G 238
           M I++V + I T    P  +V    N  G  R +   GG      GGGG  RG      G
Sbjct: 181 MNIQLVTSQIDTQRR-PAQSV----NRGGMTRNRGVLGGF-----GGGGNRRGTRGGNRG 240

[Close]

BLAST of MS014281 vs. ExPASy Swiss-Prot
Match: Q94EH8 (THO complex subunit 4C OS=Arabidopsis thaliana OX=3702 GN=ALY3 PE=1 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 6.9e-40
Identity = 124/303 (40.92%), Postives = 167/303 (55.12%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRG-----------GRGRPS-------GPGPVRRFPN 60
           M+  L+M+LD+I+K +K  RS  +R            GRG P+       G GPVRR P 
Sbjct: 1   MSDALNMTLDEIVKKSKSERSAAARSGGKGVSRKSGRGRGGPNGVVGGGRGGGPVRRGP- 60

Query: 61  RAANRTPYA-------APKAPETAWQHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDY 120
            A N  P +       A +     WQ+   + + +   ++A   S ++ GT +YI+NLD 
Sbjct: 61  LAVNTRPSSSFSINKLARRKRSLPWQNQNDLYEET---LRAVGVSGVEVGTTVYITNLDQ 120

Query: 121 GVSNEDIKELFSEVGDMKRYSIHYDKSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKP 180
           GV+NEDI+EL++E+G++KRY+IHYDK+GR  G+AEVV+ RR DA+ A++KYNNV LDG+P
Sbjct: 121 GVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRKYNNVLLDGRP 180

Query: 181 MKIEIVGTNIATPAAVPTAAVAPFENLNGFPRRQ-------------QGRGGLPSRQR-- 240
           MK+EI+G N     + P AA      LNG  +R              +GRG  PS +R  
Sbjct: 181 MKLEILGGN---TESAPVAARVNVTGLNGRMKRSVFIGQGVRGGRVGRGRGSGPSGRRLP 240

Query: 241 ----------GGGGGGRGFGRGRGRGRG----------PSEKVSAEDLDADLEKYHAESM 244
                      G GG RG GRG G GRG          P EK SA DLD DLE YHAE+M
Sbjct: 241 LQQNQQGGVTAGRGGFRGRGRGNGGGRGNKSGGRGGKKPVEK-SAADLDKDLESYHAEAM 295

[Close]

BLAST of MS014281 vs. ExPASy TrEMBL
Match: A0A6J1D4W8 (THO complex subunit 4A-like OS=Momordica charantia OX=3673 GN=LOC111017043 PE=4 SV=1)

HSP 1 Score: 469.2 bits (1206), Expect = 1.1e-128
Identity = 242/243 (99.59%), Postives = 242/243 (99.59%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGGRGRPSGPGPVRRFPNRAANRTPYAAPKAPETAW 60
           MAAPLDMSLDDIIKNNKKSRSGNSRGGRGRPSGPGPVRRFPNRAANRTPYAAPKAPETAW
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGGRGRPSGPGPVRRFPNRAANRTPYAAPKAPETAW 60

Query: 61  QHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYSIHYD 120
           QHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMK YSIHYD
Sbjct: 61  QHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKHYSIHYD 120

Query: 121 KSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAVAPFE 180
           KSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAVAPFE
Sbjct: 121 KSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAVAPFE 180

Query: 181 NLNGFPRRQQGRGGLPSRQRGGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESM 240
           NLNGFPRRQQGRGGLPSRQRGGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESM
Sbjct: 181 NLNGFPRRQQGRGGLPSRQRGGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESM 240

Query: 241 QIN 244
           QIN
Sbjct: 241 QIN 243

[Close]

BLAST of MS014281 vs. ExPASy TrEMBL
Match: A0A0A0KBU2 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G193610 PE=4 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 5.4e-112
Identity = 218/243 (89.71%), Postives = 223/243 (91.77%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGGRGRPSGPGPVRRFPNRAANRTPYAAPKAPETAW 60
           MAAPLDMSLDDIIKNNKKSRSGNSR GRGR SGPGPVRRFPNRAANRTPY+APKAPET W
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSR-GRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTW 60

Query: 61  QHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYSIHYD 120
           QHDMF D +SGF VQ GRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKR+ IHYD
Sbjct: 61  QHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYD 120

Query: 121 KSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAVAPFE 180
           KSGRSKGTAEVVFSRR+DAVAAVKKYNNVQLDGKPMKIEIVGTNI+TPA  PTAAV PFE
Sbjct: 121 KSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFE 180

Query: 181 NLNGFPRRQQGRGGLPSRQRGGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESM 240
           N NG PRRQQGRGG PSRQR     G GFGRGRGRGRGPSEKVSAEDLDADLEKYHAESM
Sbjct: 181 NSNGAPRRQQGRGGPPSRQR-----GHGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESM 237

Query: 241 QIN 244
           QIN
Sbjct: 241 QIN 237

[Close]

BLAST of MS014281 vs. ExPASy TrEMBL
Match: A0A1S3BK70 (THO complex subunit 4A-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490589 PE=4 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 3.5e-111
Identity = 217/243 (89.30%), Postives = 223/243 (91.77%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGGRGRPSGPGPVRRFPNRAANRTPYAAPKAPETAW 60
           MAAPLDMSLDDIIKNNKKSRSGNSR GRGR SGPGPVRRFPNRAA+RTPY+APKAPET W
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSR-GRGRGSGPGPVRRFPNRAASRTPYSAPKAPETTW 60

Query: 61  QHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYSIHYD 120
           QHDMF D +SGF  Q GRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKR+ IHYD
Sbjct: 61  QHDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYD 120

Query: 121 KSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAVAPFE 180
           KSGRSKGTAEVVFSRR+DAVAAVKKYNNVQLDGKPMKIEIVGTNI+TPA  PTAAV PFE
Sbjct: 121 KSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFE 180

Query: 181 NLNGFPRRQQGRGGLPSRQRGGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESM 240
           N NG PRRQQGRGG PSRQR     GRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESM
Sbjct: 181 NSNGAPRRQQGRGGPPSRQR-----GRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESM 237

Query: 241 QIN 244
           QIN
Sbjct: 241 QIN 237

[Close]

BLAST of MS014281 vs. ExPASy TrEMBL
Match: A0A6J1L1M6 (THO complex subunit 4A-like OS=Cucurbita maxima OX=3661 GN=LOC111499593 PE=4 SV=1)

HSP 1 Score: 408.7 bits (1049), Expect = 1.7e-110
Identity = 217/243 (89.30%), Postives = 221/243 (90.95%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGGRGRPSGPGPVRRFPNRAANRTPYAAPKAPETAW 60
           MAAPLDMSLDDIIKNNKKSRSG SR GRGR SGPGPVRR PNRAANRTPY+APKAPET W
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGISR-GRGRGSGPGPVRRIPNRAANRTPYSAPKAPETTW 60

Query: 61  QHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYSIHYD 120
           QHDMF+DQ +GF VQAGRAS+IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRY IHYD
Sbjct: 61  QHDMFVDQGAGFPVQAGRASSIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYD 120

Query: 121 KSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAVAPFE 180
           KSGRSKGTAEVVFSRR DA AAVKKYNNVQLDGKPMKIEIVGTNIAT A  P AAV PFE
Sbjct: 121 KSGRSKGTAEVVFSRRGDAAAAVKKYNNVQLDGKPMKIEIVGTNIATHAVGPPAAVNPFE 180

Query: 181 NLNGFPRRQQGRGGLPSRQRGGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESM 240
           N NG PRRQQGRGGLPSRQR    GGRG GRGRGRGRGPSEKVSAEDLDADLEKYHAESM
Sbjct: 181 NFNGVPRRQQGRGGLPSRQR----GGRGSGRGRGRGRGPSEKVSAEDLDADLEKYHAESM 238

Query: 241 QIN 244
           QIN
Sbjct: 241 QIN 238

[Close]

BLAST of MS014281 vs. ExPASy TrEMBL
Match: A0A6J1G721 (THO complex subunit 4A-like OS=Cucurbita moschata OX=3662 GN=LOC111451345 PE=4 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 2.3e-110
Identity = 217/243 (89.30%), Postives = 221/243 (90.95%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGGRGRPSGPGPVRRFPNRAANRTPYAAPKAPETAW 60
           MAAPLDMSLDDIIKNNKKSRSG SR GRGR SGPGPVRR PNRAANRTPY+APKAPET W
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGISR-GRGRGSGPGPVRRIPNRAANRTPYSAPKAPETTW 60

Query: 61  QHDMFIDQTSGFAVQAGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYSIHYD 120
           QHDMF+DQ +GF VQAGRAS+IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRY IHYD
Sbjct: 61  QHDMFVDQGAGFPVQAGRASSIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYD 120

Query: 121 KSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAVAPFE 180
           KSGRSKGTAEVVFSRR DA AAVKKYNNVQLDGKPMKIEIVGTNIAT A  P AAV PFE
Sbjct: 121 KSGRSKGTAEVVFSRRGDAAAAVKKYNNVQLDGKPMKIEIVGTNIATHAVGPPAAVNPFE 180

Query: 181 NLNGFPRRQQGRGGLPSRQRGGGGGGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESM 240
           N NG PRRQQGRGGLPSRQR    GGRG GRGRGRGRGPSEKVSAEDLDADLEKYHAESM
Sbjct: 181 NFNGAPRRQQGRGGLPSRQR----GGRGSGRGRGRGRGPSEKVSAEDLDADLEKYHAESM 238

Query: 241 QIN 244
           QIN
Sbjct: 241 QIN 238

[Close]

BLAST of MS014281 vs. TAIR 10
Match: AT5G59950.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 261.9 bits (668), Expect = 5.0e-70
Identity = 161/251 (64.14%), Postives = 193/251 (76.89%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSG-NSRGGRGRPSGPGPVRR-FPNRAANRT-PYAAPKAPE 60
           M+  LDMSLDD+I  N+KSR G     G G  SGPGP RR  PNR + R+ PY + KAPE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TAWQHDMFIDQTSGFAVQAGRASA-IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYS 120
           + W HDMF D++     ++GR+SA I+TGTKLYISNLDYGV NEDIKELF+EVG++KRY+
Sbjct: 61  STWGHDMFSDRSEDH--RSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 IHYDKSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAV 180
           +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T AA P+   
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQT-AAAPSGRP 180

Query: 181 APFENLNGFP-RRQQGRGGLPSRQRGG--GGGGR-GFGRGRGRGRGPSEKVSAEDLDADL 240
           A   N NG P R  QGRGG   +QRGG  GGGGR G GRGR  G+GP+EK+SAEDLDADL
Sbjct: 181 AN-GNSNGAPWRGGQGRGG---QQRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDADL 240

Query: 241 EKYHAESMQIN 244
           +KYH+  M+ N
Sbjct: 241 DKYHSGDMETN 244

[Close]

BLAST of MS014281 vs. TAIR 10
Match: AT5G59950.5 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 261.5 bits (667), Expect = 6.5e-70
Identity = 161/252 (63.89%), Postives = 193/252 (76.59%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSG-NSRGGRGRPSGPGPVRR-FPNRAANRT-PYAAPKAPE 60
           M+  LDMSLDD+I  N+KSR G     G G  SGPGP RR  PNR + R+ PY + KAPE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TAWQHDMFIDQTSGFAVQAGRASA-IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYS 120
           + W HDMF D++     ++GR+SA I+TGTKLYISNLDYGV NEDIKELF+EVG++KRY+
Sbjct: 61  STWGHDMFSDRSEDH--RSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 IHYDKSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAV 180
           +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T AA P+   
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQT-AAAPSGRP 180

Query: 181 APFENLNGFP--RRQQGRGGLPSRQRGG--GGGGR-GFGRGRGRGRGPSEKVSAEDLDAD 240
           A   N NG P  R  QGRGG   +QRGG  GGGGR G GRGR  G+GP+EK+SAEDLDAD
Sbjct: 181 AN-GNSNGAPWSRGGQGRGG---QQRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDAD 240

Query: 241 LEKYHAESMQIN 244
           L+KYH+  M+ N
Sbjct: 241 LDKYHSGDMETN 245

[Close]

BLAST of MS014281 vs. TAIR 10
Match: AT5G59950.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 255.8 bits (652), Expect = 3.6e-68
Identity = 160/251 (63.75%), Postives = 192/251 (76.49%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKKSRSG-NSRGGRGRPSGPGPVRR-FPNRAANRT-PYAAPKAPE 60
           M+  LDMSLDD+I  N+KSR G     G G  SGPGP RR  PNR + R+ PY +  APE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQS--APE 60

Query: 61  TAWQHDMFIDQTSGFAVQAGRASA-IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYS 120
           + W HDMF D++     ++GR+SA I+TGTKLYISNLDYGV NEDIKELF+EVG++KRY+
Sbjct: 61  STWGHDMFSDRSEDH--RSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 IHYDKSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKIEIVGTNIATPAAVPTAAV 180
           +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T AA P+   
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQT-AAAPSGRP 180

Query: 181 APFENLNGFP-RRQQGRGGLPSRQRGG--GGGGR-GFGRGRGRGRGPSEKVSAEDLDADL 240
           A   N NG P R  QGRGG   +QRGG  GGGGR G GRGR  G+GP+EK+SAEDLDADL
Sbjct: 181 AN-GNSNGAPWRGGQGRGG---QQRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDADL 240

Query: 241 EKYHAESMQIN 244
           +KYH+  M+ N
Sbjct: 241 DKYHSGDMETN 242

[Close]

BLAST of MS014281 vs. TAIR 10
Match: AT5G02530.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 241.5 bits (615), Expect = 7.0e-64
Identity = 163/289 (56.40%), Postives = 186/289 (64.36%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKK---SR------SGNSRGGR-GRPSGPGPVRRFPNRAANRT-P 60
           M+  LDMSLDDIIK+N+K   SR       GN+ GGR G  S  GP RRF NR   RT P
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YAAP----KAPETAWQHDMFIDQTSGFA-------VQAGRASAIQTGTKLYISNLDYGVS 120
           Y+ P    +A +  WQ+D+F    S  A          G  S+I+TGTKLYISNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGDMKRYSIHYDKSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKI 180
           NEDIKELFSEVGD+KRY IHYD+SGRSKGTAEVVFSRR DA+AAVK+YNNVQLDGK MKI
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGTNIATPAAVPTAAVA--PF----------ENLNG-----FPRRQQGRGGLPSRQRG 240
           EIVGTN++ P A+P  A A  PF          EN NG     F    +GRGG   R RG
Sbjct: 181 EIVGTNLSAP-ALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGGFMGRPRG 240

Query: 241 GGGGGRGFGRGRGR---------GRGPSEKVSAEDLDADLEKYHAESMQ 242
           GG GG  F  GRG          GRG  E VSAEDLDA+L+KYH E+M+
Sbjct: 241 GGFGGGNFRGGRGARGRGGRGSGGRGRDENVSAEDLDAELDKYHKEAME 288

[Close]

BLAST of MS014281 vs. TAIR 10
Match: AT5G02530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 239.6 bits (610), Expect = 2.7e-63
Identity = 163/291 (56.01%), Postives = 186/291 (63.92%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNNKK---SR------SGNSRGGR-GRPSGPGPVRRFPNRAANRT-P 60
           M+  LDMSLDDIIK+N+K   SR       GN+ GGR G  S  GP RRF NR   RT P
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YAAP----KAPETAWQHDMFIDQTSGFA-------VQAGRASAIQTGTKLYISNLDYGVS 120
           Y+ P    +A +  WQ+D+F    S  A          G  S+I+TGTKLYISNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGDMKRYSIHYDKSGRSKGTAEVVFSRRVDAVAAVKKYNNVQLDGKPMKI 180
           NEDIKELFSEVGD+KRY IHYD+SGRSKGTAEVVFSRR DA+AAVK+YNNVQLDGK MKI
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGTNIATPAAVPTAAVA--PF----------ENLNGFPR-------RQQGRGGLPSRQ 240
           EIVGTN++ P A+P  A A  PF          EN NG          R +GRGG   R 
Sbjct: 181 EIVGTNLSAP-ALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGRGGFMGRP 240

Query: 241 RGGGGGGRGFGRGRGR---------GRGPSEKVSAEDLDADLEKYHAESMQ 242
           RGGG GG  F  GRG          GRG  E VSAEDLDA+L+KYH E+M+
Sbjct: 241 RGGGFGGGNFRGGRGARGRGGRGSGGRGRDENVSAEDLDAELDKYHKEAME 290

The following BLAST results are available for this feature:

BLAST of MS014281 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148377.1	2.2e-128	99.59	THO complex subunit 4A-like [Momordica charantia]	[more]
XP_038901991.1	5.9e-113	90.95	THO complex subunit 4A-like [Benincasa hispida]	[more]
XP_004143092.1	1.1e-111	89.71	THO complex subunit 4A [Cucumis sativus] >KGN47175.1 hypothetical protein Csa_02...	[more]
XP_008448384.1	7.2e-111	89.30	PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo] >XP_008448386.1...	[more]
XP_023006955.1	3.6e-110	89.30	THO complex subunit 4A-like [Cucurbita maxima]	[more]

BLAST of MS014281 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L773	7.1e-69	64.14	THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1	[more]
Q8L719	3.8e-62	56.01	THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1	[more]
Q6NQ72	8.7e-43	43.49	THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1	[more]
B5FXN8	4.0e-40	45.69	THO complex subunit 4 OS=Taeniopygia guttata OX=59729 GN=ALYREF PE=2 SV=1	[more]
Q94EH8	6.9e-40	40.92	THO complex subunit 4C OS=Arabidopsis thaliana OX=3702 GN=ALY3 PE=1 SV=1	[more]

BLAST of MS014281 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D4W8	1.1e-128	99.59	THO complex subunit 4A-like OS=Momordica charantia OX=3673 GN=LOC111017043 PE=4 ...	[more]
A0A0A0KBU2	5.4e-112	89.71	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G193610 PE=4 SV...	[more]
A0A1S3BK70	3.5e-111	89.30	THO complex subunit 4A-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490589 P...	[more]
A0A6J1L1M6	1.7e-110	89.30	THO complex subunit 4A-like OS=Cucurbita maxima OX=3661 GN=LOC111499593 PE=4 SV=...	[more]
A0A6J1G721	2.3e-110	89.30	THO complex subunit 4A-like OS=Cucurbita moschata OX=3662 GN=LOC111451345 PE=4 S...	[more]

BLAST of MS014281 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59950.1	5.0e-70	64.14	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59950.5	6.5e-70	63.89	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59950.3	3.6e-68	63.75	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G02530.2	7.0e-64	56.40	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G02530.1	2.7e-63	56.01	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 225..243
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 184..243
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 214..236
None	No IPR available	PANTHER	PTHR19965	RNA AND EXPORT FACTOR BINDING PROTEIN	coord: 1..242
None	No IPR available	PANTHER	PTHR19965:SF74	CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED	coord: 1..242
None	No IPR available	CDD	cd12680	RRM_THOC4	coord: 86..160 e-value: 1.75708E-46 score: 147.401
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 87..159 e-value: 2.0E-19 score: 80.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 88..156 e-value: 4.6E-16 score: 58.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 86..163 score: 16.14197
IPR025715	Chromatin target of PRMT1 protein, C-terminal	SMART	SM01218	FoP_duplication_2	coord: 175..243 e-value: 3.5E-12 score: 56.5
IPR025715	Chromatin target of PRMT1 protein, C-terminal	PFAM	PF13865	FoP_duplication	coord: 186..238 e-value: 7.4E-9 score: 36.1
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 72..225 e-value: 7.9E-27 score: 96.0
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 23..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS014281.1	MS014281.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding