MS014260 (gene) Bitter gourd (TR) v1

Overview


Name	MS014260
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold5: 1728283 .. 1728566 (+)
RNA-Seq Expression	MS014260
Synteny	MS014260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGCAATGGATAGGCATTCCACTTTTGACTTTTCTTTATTGGATTAGACTCGCAAGAATGCCTCGATCGCGGGAGCTCATTTTCAAATCATGGGCCACACGTGCGTCCCAGTCAAGTGGCCGAAAACCACCATTTCCGTAGATCAGAGGAGAGGAATAAAGAATTTAAGGGGGACCGCTCCTCGTCGGCGGCTCAAAAGCCCGGTCGCCGGCGAGTGAGCCGCCGAAGTAAGAAGAAGCTGCGCTATAGCAAAGGTCAAACGGCGGTGGCGGATCTGTTGACT

mRNA sequence

TGGGCAATGGATAGGCATTCCACTTTTGACTTTTCTTTATTGATTAGACTCGCAAGAATGCCTCGATCGCGGGAGCTCATTTTCAAATCATGGGCCACACGTGCGTCCCAGTCAAGTGGCCGAAAACCACCATTTCCGTCAGAGGAGAGGAATAAAGAATTTAAGGGGGACCGCTCCTCGTCGGCGGCTCAAAAGCCCGGTCGCCGGCGAGTGAGCCGCCGAAGTAAGAAGAAGCTGCGCTATAGCAAAGGTCAAACGGCGGTGGCGGATCTGTTGACT

Coding sequence (CDS)

TGGGCAATGGATAGGCATTCCACTTTTGACTTTTCTTTATTGATTAGACTCGCAAGAATGCCTCGATCGCGGGAGCTCATTTTCAAATCATGGGCCACACGTGCGTCCCAGTCAAGTGGCCGAAAACCACCATTTCCGTCAGAGGAGAGGAATAAAGAATTTAAGGGGGACCGCTCCTCGTCGGCGGCTCAAAAGCCCGGTCGCCGGCGAGTGAGCCGCCGAAGTAAGAAGAAGCTGCGCTATAGCAAAGGTCAAACGGCGGTGGCGGATCTGTTGACT

Protein sequence

WAMDRHSTFDFSLLIRLARMPRSRELIFKSWATRASQSSGRKPPFPSEERNKEFKGDRSSSAAQKPGRRRVSRRSKKKLRYSKGQTAVADLLT

Homology

[Close]

BLAST of MS014260 vs. NCBI nr
Match: KGN47149.1 (hypothetical protein Csa_021063 [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 6.7e-09
Identity = 47/95 (49.47%), Postives = 60/95 (63.16%), Query Frame = 0


Query: 3  MDRHSTFDFSLL-IRLARMPRSRELIFKSWATRASQSSGRKPPFP---SEERNKEFKGDR 62
          +DRHS FDFS++ +    MPRS EL+FK  +T  SQSSG+KPPF    +EERN+E KG  
Sbjct: 3  LDRHSAFDFSIIGLNSKEMPRSWELVFKLRSTCTSQSSGQKPPFQWRGAEERNQELKGRL 62

Query: 63 SSSAAQKPGRRRVSRRSKKKLRYSKGQTAVADLLT 94
          S   ++  G R V+R     L   KGQ A+A LLT
Sbjct: 63 SVGGSKLSGERAVNR-----LASGKGQVAIAALLT 92

[Close]

BLAST of MS014260 vs. NCBI nr
Match: TYK24017.1 (hypothetical protein E5676_scaffold250G001090 [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 8.8e-09
Identity = 46/95 (48.42%), Postives = 60/95 (63.16%), Query Frame = 0


Query: 3  MDRHSTFDFSLL-IRLARMPRSRELIFKSWATRASQSSGRKPPF---PSEERNKEFKGDR 62
          +DRHS FDFS++ +    MPRS EL+FK  +TR SQSSG+KPPF    +E+RN+E KG  
Sbjct: 3  LDRHSAFDFSIIRLNSKEMPRSWELVFKLRSTRTSQSSGQKPPFQWSAAEQRNRELKGPL 62

Query: 63 SSSAAQKPGRRRVSRRSKKKLRYSKGQTAVADLLT 94
          S   ++  G R V R     +   KGQ A+A LLT
Sbjct: 63 SIGGSKFSGERAVVR-----VASGKGQVAIAYLLT 92

[Close]

BLAST of MS014260 vs. ExPASy TrEMBL
Match: A0A0A0KE89 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190400 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.3e-09
Identity = 47/95 (49.47%), Postives = 60/95 (63.16%), Query Frame = 0


Query: 3  MDRHSTFDFSLL-IRLARMPRSRELIFKSWATRASQSSGRKPPFP---SEERNKEFKGDR 62
          +DRHS FDFS++ +    MPRS EL+FK  +T  SQSSG+KPPF    +EERN+E KG  
Sbjct: 3  LDRHSAFDFSIIGLNSKEMPRSWELVFKLRSTCTSQSSGQKPPFQWRGAEERNQELKGRL 62

Query: 63 SSSAAQKPGRRRVSRRSKKKLRYSKGQTAVADLLT 94
          S   ++  G R V+R     L   KGQ A+A LLT
Sbjct: 63 SVGGSKLSGERAVNR-----LASGKGQVAIAALLT 92

[Close]

BLAST of MS014260 vs. ExPASy TrEMBL
Match: A0A5D3DK92 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G001090 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.3e-09
Identity = 46/95 (48.42%), Postives = 60/95 (63.16%), Query Frame = 0


Query: 3  MDRHSTFDFSLL-IRLARMPRSRELIFKSWATRASQSSGRKPPF---PSEERNKEFKGDR 62
          +DRHS FDFS++ +    MPRS EL+FK  +TR SQSSG+KPPF    +E+RN+E KG  
Sbjct: 3  LDRHSAFDFSIIRLNSKEMPRSWELVFKLRSTRTSQSSGQKPPFQWSAAEQRNRELKGPL 62

Query: 63 SSSAAQKPGRRRVSRRSKKKLRYSKGQTAVADLLT 94
          S   ++  G R V R     +   KGQ A+A LLT
Sbjct: 63 SIGGSKFSGERAVVR-----VASGKGQVAIAYLLT 92

The following BLAST results are available for this feature:

BLAST of MS014260 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47149.1	6.7e-09	49.47	hypothetical protein Csa_021063 [Cucumis sativus]	[more]
TYK24017.1	8.8e-09	48.42	hypothetical protein E5676_scaffold250G001090 [Cucumis melo var. makuwa]	[more]

BLAST of MS014260 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS014260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KE89	3.3e-09	49.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190400 PE=4 SV=1	[more]
A0A5D3DK92	4.3e-09	48.42	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MS014260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS014260.1	MS014260.1	mRNA