Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACCACCATATCCACTTCTCTATCTCTACCAATTTTCCTCTCTACTTTCAATCCAAAGCCTCACCAGTTTCTTCGTCTTCGTAGCTCATCTACACCAAACATTCTCTCTCGCCGACCAGCACTTCTCGTTCTGAATCCACTTCGCCAAAATTCTGCAAGAGGAAACTCAATTCGGAGGCTCCATGCCACTTCTGAACAAACTCTGGCCTCCGAATCCGCCGCGCTGGTGGAGAAATCGCAGGAGATAACATCCAGCGGCGACGACGGCGTATCCACCATCATTTCCGCTCTTCTTTTTGTCGCTTTCATCGGTCTATCTATTCTCACAATCGGGGTAAATTCAGCGCTTGAATTCGAATCTCGAAGTCGAATTTCTACAGTCGATGATTTCATCAACACAAAATTGCTGTTGATTTTGTCTGTTTGATTAGGGTTTTGACGTCGGATTCGCGTTTCGGTTTGCAGGTAATCTACATTGCAGTTACGGACTTCTTGCAGAAGAGAGAGAAGGAAAAGTTTGAGAAAGAGGAGACGGCTAAGAACAAAAAGAGTGGGAAAAAGAAGAAGGTGAGAGCTAGAGCTGGACCGAGGGGATTCGGCCAGAAGATTGAAGAAGAAGAACAGGAC
mRNA sequence
ATGGCCACCACCATATCCACTTCTCTATCTCTACCAATTTTCCTCTCTACTTTCAATCCAAAGCCTCACCAGTTTCTTCGTCTTCGTAGCTCATCTACACCAAACATTCTCTCTCGCCGACCAGCACTTCTCGTTCTGAATCCACTTCGCCAAAATTCTGCAAGAGGAAACTCAATTCGGAGGCTCCATGCCACTTCTGAACAAACTCTGGCCTCCGAATCCGCCGCGCTGGTGGAGAAATCGCAGGAGATAACATCCAGCGGCGACGACGGCGTATCCACCATCATTTCCGCTCTTCTTTTTGTCGCTTTCATCGGTCTATCTATTCTCACAATCGGGGTAATCTACATTGCAGTTACGGACTTCTTGCAGAAGAGAGAGAAGGAAAAGTTTGAGAAAGAGGAGACGGCTAAGAACAAAAAGAGTGGGAAAAAGAAGAAGGTGAGAGCTAGAGCTGGACCGAGGGGATTCGGCCAGAAGATTGAAGAAGAAGAACAGGAC
Coding sequence (CDS)
ATGGCCACCACCATATCCACTTCTCTATCTCTACCAATTTTCCTCTCTACTTTCAATCCAAAGCCTCACCAGTTTCTTCGTCTTCGTAGCTCATCTACACCAAACATTCTCTCTCGCCGACCAGCACTTCTCGTTCTGAATCCACTTCGCCAAAATTCTGCAAGAGGAAACTCAATTCGGAGGCTCCATGCCACTTCTGAACAAACTCTGGCCTCCGAATCCGCCGCGCTGGTGGAGAAATCGCAGGAGATAACATCCAGCGGCGACGACGGCGTATCCACCATCATTTCCGCTCTTCTTTTTGTCGCTTTCATCGGTCTATCTATTCTCACAATCGGGGTAATCTACATTGCAGTTACGGACTTCTTGCAGAAGAGAGAGAAGGAAAAGTTTGAGAAAGAGGAGACGGCTAAGAACAAAAAGAGTGGGAAAAAGAAGAAGGTGAGAGCTAGAGCTGGACCGAGGGGATTCGGCCAGAAGATTGAAGAAGAAGAACAGGAC
Protein sequence
MATTISTSLSLPIFLSTFNPKPHQFLRLRSSSTPNILSRRPALLVLNPLRQNSARGNSIRRLHATSEQTLASESAALVEKSQEITSSGDDGVSTIISALLFVAFIGLSILTIGVIYIAVTDFLQKREKEKFEKEETAKNKKSGKKKKVRARAGPRGFGQKIEEEEQD
Homology
BLAST of MS014247 vs. NCBI nr
Match:
XP_022148488.1 (uncharacterized protein LOC111017113 [Momordica charantia])
HSP 1 Score: 291.6 bits (745), Expect = 4.4e-75
Identity = 165/166 (99.40%), Postives = 165/166 (99.40%), Query Frame = 0
Query: 1 MATTISTSLSLPIFLSTFNPKPHQFLRLRSSSTPNILSRRPALLVLNPLRQNSARGNSIR 60
MATTISTSLSLPIFLSTFNPKPHQFLRLRSSSTPNILSRRPALLVLNPLRQNSARGNSIR
Sbjct: 1 MATTISTSLSLPIFLSTFNPKPHQFLRLRSSSTPNILSRRPALLVLNPLRQNSARGNSIR 60
Query: 61 RLHATSEQTLASESAALVEKSQEITSSGDDGVSTIISALLFVAFIGLSILTIGVIYIAVT 120
RLHATSEQTLASESAALVEKSQEITSSGDDGVSTIISALLFVAFIGLSILTIGVIYIAVT
Sbjct: 61 RLHATSEQTLASESAALVEKSQEITSSGDDGVSTIISALLFVAFIGLSILTIGVIYIAVT 120
Query: 121 DFLQKREKEKFEKEETAKNKKSGKKKKVRARAGPRGFGQKIEEEEQ 167
DFLQKREKEKFEK ETAKNKKSGKKKKVRARAGPRGFGQKIEEEEQ
Sbjct: 121 DFLQKREKEKFEKVETAKNKKSGKKKKVRARAGPRGFGQKIEEEEQ 166
BLAST of MS014247 vs. NCBI nr
Match:
XP_038901778.1 (uncharacterized protein LOC120088501 [Benincasa hispida])
HSP 1 Score: 205.3 bits (521), Expect = 4.1e-49
Identity = 128/173 (73.99%), Postives = 140/173 (80.92%), Query Frame = 0
Query: 1 MATTISTSLSLPIFLSTFNPKPHQFL-RLRSSSTPNIL-----SRRPALLVLNPLRQNSA 60
MA+T ST LSLPIFLS+ NP + L LR SS+P L SRR LL+ NPL QN
Sbjct: 1 MASTASTFLSLPIFLSSPNPNSSKLLPTLRCSSSPTFLSSTTPSRRRTLLIPNPLHQNRQ 60
Query: 61 RGNSIRRLHATSEQTLASESAALVEKSQEITSSGDDGVSTIISALLFVAFIGLSILTIGV 120
+ SIRRLHATSE TLAS+SAALVEKSQEI S+ DDGVSTIIS LLFVAFIGLSILTIGV
Sbjct: 61 KAISIRRLHATSEDTLASDSAALVEKSQEIVSTTDDGVSTIISVLLFVAFIGLSILTIGV 120
Query: 121 IYIAVTDFLQKREKEKFEKEETAKNKKSGKKKKVRARAGPRGFGQKIEEEEQD 168
IYIAVTDFLQKREKEKFEKEE K KKSGKKKKV+A+ GPRGFGQK+EEEE+D
Sbjct: 121 IYIAVTDFLQKREKEKFEKEEAGK-KKSGKKKKVKAKGGPRGFGQKVEEEEED 172
BLAST of MS014247 vs. NCBI nr
Match:
XP_023532311.1 (uncharacterized protein LOC111794502 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 203.0 bits (515), Expect = 2.0e-48
Identity = 130/171 (76.02%), Postives = 140/171 (81.87%), Query Frame = 0
Query: 1 MATTISTSLSLPIFLSTFNPKPHQFLRLRSSSTPNI----LSRRPALLVLNPLRQNSARG 60
MATT STSLSLPIFLS+ NP ++ LRSSS LSRRP LV L QN +R
Sbjct: 1 MATTTSTSLSLPIFLSSSNPNSYKLPSLRSSSASFASSLNLSRRPVALV---LIQNRSRR 60
Query: 61 NSIRRLHATSEQTLASESAALVEKSQEITSSGDDGVSTIISALLFVAFIGLSILTIGVIY 120
SIRRLHA SE+TLASESAALVEKSQEI S+GDDGVSTIIS LLFVAFIGLS+LTIGVIY
Sbjct: 61 GSIRRLHAISEETLASESAALVEKSQEIASTGDDGVSTIISVLLFVAFIGLSVLTIGVIY 120
Query: 121 IAVTDFLQKREKEKFEKEETAKNKKSGKKK--KVRARAGPRGFGQKIEEEE 166
IAVTDFLQKREKEKFEKEE A NKKSGKKK KV+ARAGPRGFGQK+E+EE
Sbjct: 121 IAVTDFLQKREKEKFEKEEAA-NKKSGKKKRVKVKARAGPRGFGQKVEQEE 167
BLAST of MS014247 vs. NCBI nr
Match:
XP_022947295.1 (uncharacterized protein LOC111451198 [Cucurbita moschata])
HSP 1 Score: 202.6 bits (514), Expect = 2.7e-48
Identity = 129/171 (75.44%), Postives = 140/171 (81.87%), Query Frame = 0
Query: 1 MATTISTSLSLPIFLSTFNPKPHQFLRLRSSSTPNI----LSRRPALLVLNPLRQNSARG 60
MATT STSLSLPIFLS+ NP ++ LRSSS LSRRPA LV L QN R
Sbjct: 1 MATTTSTSLSLPIFLSSSNPNSYKLPSLRSSSASFASSFNLSRRPAALV---LIQNRPRR 60
Query: 61 NSIRRLHATSEQTLASESAALVEKSQEITSSGDDGVSTIISALLFVAFIGLSILTIGVIY 120
SIRRLHA SE+TLASESAALVEKSQEI S+GDDGVSTIIS LLFVAF+GLS+LTIGVIY
Sbjct: 61 GSIRRLHAVSEETLASESAALVEKSQEIASTGDDGVSTIISVLLFVAFVGLSVLTIGVIY 120
Query: 121 IAVTDFLQKREKEKFEKEETAKNKKSGKKK--KVRARAGPRGFGQKIEEEE 166
IAVTDFLQKREKEKFEKEE A NKKSGKKK KV+A+AGPRGFGQK+E+EE
Sbjct: 121 IAVTDFLQKREKEKFEKEEAA-NKKSGKKKKVKVKAKAGPRGFGQKVEQEE 167
BLAST of MS014247 vs. NCBI nr
Match:
KAG6605444.1 (hypothetical protein SDJN03_02761, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 200.3 bits (508), Expect = 1.3e-47
Identity = 128/171 (74.85%), Postives = 139/171 (81.29%), Query Frame = 0
Query: 1 MATTISTSLSLPIFLSTFNPKPHQFLRLRSSSTPNI----LSRRPALLVLNPLRQNSARG 60
MATT STSLSLPIFLS+ NP ++ RSSS LSRRPA LV L QN R
Sbjct: 1 MATTTSTSLSLPIFLSSSNPNSYKLPSRRSSSASFASSFNLSRRPAALV---LIQNRPRR 60
Query: 61 NSIRRLHATSEQTLASESAALVEKSQEITSSGDDGVSTIISALLFVAFIGLSILTIGVIY 120
SIRRLHA SE+TLASESAALVEKSQEI S+GDDGVSTIIS LLFVAF+GLS+LTIGVIY
Sbjct: 61 GSIRRLHAVSEETLASESAALVEKSQEIASTGDDGVSTIISVLLFVAFVGLSVLTIGVIY 120
Query: 121 IAVTDFLQKREKEKFEKEETAKNKKSGKKK--KVRARAGPRGFGQKIEEEE 166
IAVTDFLQKREKEKFEKEE A NKKSGKKK KV+A+AGPRGFGQK+E+EE
Sbjct: 121 IAVTDFLQKREKEKFEKEEAA-NKKSGKKKKVKVKAKAGPRGFGQKVEQEE 167
BLAST of MS014247 vs. ExPASy TrEMBL
Match:
A0A6J1D484 (uncharacterized protein LOC111017113 OS=Momordica charantia OX=3673 GN=LOC111017113 PE=4 SV=1)
HSP 1 Score: 291.6 bits (745), Expect = 2.1e-75
Identity = 165/166 (99.40%), Postives = 165/166 (99.40%), Query Frame = 0
Query: 1 MATTISTSLSLPIFLSTFNPKPHQFLRLRSSSTPNILSRRPALLVLNPLRQNSARGNSIR 60
MATTISTSLSLPIFLSTFNPKPHQFLRLRSSSTPNILSRRPALLVLNPLRQNSARGNSIR
Sbjct: 1 MATTISTSLSLPIFLSTFNPKPHQFLRLRSSSTPNILSRRPALLVLNPLRQNSARGNSIR 60
Query: 61 RLHATSEQTLASESAALVEKSQEITSSGDDGVSTIISALLFVAFIGLSILTIGVIYIAVT 120
RLHATSEQTLASESAALVEKSQEITSSGDDGVSTIISALLFVAFIGLSILTIGVIYIAVT
Sbjct: 61 RLHATSEQTLASESAALVEKSQEITSSGDDGVSTIISALLFVAFIGLSILTIGVIYIAVT 120
Query: 121 DFLQKREKEKFEKEETAKNKKSGKKKKVRARAGPRGFGQKIEEEEQ 167
DFLQKREKEKFEK ETAKNKKSGKKKKVRARAGPRGFGQKIEEEEQ
Sbjct: 121 DFLQKREKEKFEKVETAKNKKSGKKKKVRARAGPRGFGQKIEEEEQ 166
BLAST of MS014247 vs. ExPASy TrEMBL
Match:
A0A6J1G6G9 (uncharacterized protein LOC111451198 OS=Cucurbita moschata OX=3662 GN=LOC111451198 PE=4 SV=1)
HSP 1 Score: 202.6 bits (514), Expect = 1.3e-48
Identity = 129/171 (75.44%), Postives = 140/171 (81.87%), Query Frame = 0
Query: 1 MATTISTSLSLPIFLSTFNPKPHQFLRLRSSSTPNI----LSRRPALLVLNPLRQNSARG 60
MATT STSLSLPIFLS+ NP ++ LRSSS LSRRPA LV L QN R
Sbjct: 1 MATTTSTSLSLPIFLSSSNPNSYKLPSLRSSSASFASSFNLSRRPAALV---LIQNRPRR 60
Query: 61 NSIRRLHATSEQTLASESAALVEKSQEITSSGDDGVSTIISALLFVAFIGLSILTIGVIY 120
SIRRLHA SE+TLASESAALVEKSQEI S+GDDGVSTIIS LLFVAF+GLS+LTIGVIY
Sbjct: 61 GSIRRLHAVSEETLASESAALVEKSQEIASTGDDGVSTIISVLLFVAFVGLSVLTIGVIY 120
Query: 121 IAVTDFLQKREKEKFEKEETAKNKKSGKKK--KVRARAGPRGFGQKIEEEE 166
IAVTDFLQKREKEKFEKEE A NKKSGKKK KV+A+AGPRGFGQK+E+EE
Sbjct: 121 IAVTDFLQKREKEKFEKEEAA-NKKSGKKKKVKVKAKAGPRGFGQKVEQEE 167
BLAST of MS014247 vs. ExPASy TrEMBL
Match:
A0A6J1L1T3 (uncharacterized protein LOC111499635 OS=Cucurbita maxima OX=3661 GN=LOC111499635 PE=4 SV=1)
HSP 1 Score: 198.0 bits (502), Expect = 3.2e-47
Identity = 127/171 (74.27%), Postives = 138/171 (80.70%), Query Frame = 0
Query: 1 MATTISTSLSLPIFLSTFNPKPHQFLRLRSSSTPNI----LSRRPALLVLNPLRQNSARG 60
MATT STSLSLPI LS+ NP ++ LRSSS LSRRPA LV L QN R
Sbjct: 1 MATTTSTSLSLPISLSSSNPNSYKLPSLRSSSASFASSFNLSRRPAALV---LLQNRPRR 60
Query: 61 NSIRRLHATSEQTLASESAALVEKSQEITSSGDDGVSTIISALLFVAFIGLSILTIGVIY 120
SIRRLHA SE+TLASESAALVEKSQEI S+GDDGVSTIIS LLFVAF+GLS+LTIGVIY
Sbjct: 61 GSIRRLHAISEETLASESAALVEKSQEIASTGDDGVSTIISVLLFVAFVGLSVLTIGVIY 120
Query: 121 IAVTDFLQKREKEKFEKEETAKNKKSGKKK--KVRARAGPRGFGQKIEEEE 166
IAVTDFLQKREKEKFEKEE A NKKSGKKK KV+A+ GPRGFGQK+E+EE
Sbjct: 121 IAVTDFLQKREKEKFEKEEAA-NKKSGKKKKVKVKAKTGPRGFGQKVEQEE 167
BLAST of MS014247 vs. ExPASy TrEMBL
Match:
A0A5A7V864 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G001250 PE=4 SV=1)
HSP 1 Score: 185.3 bits (469), Expect = 2.1e-43
Identity = 124/175 (70.86%), Postives = 135/175 (77.14%), Query Frame = 0
Query: 1 MATTISTSLSLPIFLSTFNPKPHQFLRLRSSSTP-----NILSRRPALLVLNPLRQNSAR 60
MA+T S SLSLPI LS+ N P LRSSS+P LS RP L +LNPLRQN +
Sbjct: 1 MASTTSISLSLPISLSSSNLLP----TLRSSSSPPFPSSTALSCRPTLPLLNPLRQNRQK 60
Query: 61 GNSIRRLH-ATSEQTLASESAALV-EKSQEIT-SSGDDGVSTIISALLFVAFIGLSILTI 120
S +H ATSEQTLAS+SAALV EKSQ+I S+ DDGVSTIIS LLF+AFIGLSILTI
Sbjct: 61 QLSFSSIHAATSEQTLASDSAALVAEKSQDIVGSTNDDGVSTIISVLLFIAFIGLSILTI 120
Query: 121 GVIYIAVTDFLQKREKEKFEKEETAKNKKSGKKKKVRARAGPRGFGQKIEEEEQD 168
GVIYI VTDFLQKREKEKFEKEE K KKSGKKKKVRAR GPRGFGQK+EEEE D
Sbjct: 121 GVIYIGVTDFLQKREKEKFEKEEAGKKKKSGKKKKVRARDGPRGFGQKVEEEEDD 171
BLAST of MS014247 vs. ExPASy TrEMBL
Match:
A0A1S3CM77 (uncharacterized protein LOC103502067 OS=Cucumis melo OX=3656 GN=LOC103502067 PE=4 SV=1)
HSP 1 Score: 185.3 bits (469), Expect = 2.1e-43
Identity = 124/175 (70.86%), Postives = 135/175 (77.14%), Query Frame = 0
Query: 1 MATTISTSLSLPIFLSTFNPKPHQFLRLRSSSTP-----NILSRRPALLVLNPLRQNSAR 60
MA+T S SLSLPI LS+ N P LRSSS+P LS RP L +LNPLRQN +
Sbjct: 1 MASTTSISLSLPISLSSSNLLP----TLRSSSSPPFPSSTALSCRPTLPLLNPLRQNRQK 60
Query: 61 GNSIRRLH-ATSEQTLASESAALV-EKSQEIT-SSGDDGVSTIISALLFVAFIGLSILTI 120
S +H ATSEQTLAS+SAALV EKSQ+I S+ DDGVSTIIS LLF+AFIGLSILTI
Sbjct: 61 QLSFSSIHAATSEQTLASDSAALVAEKSQDIVGSTNDDGVSTIISVLLFIAFIGLSILTI 120
Query: 121 GVIYIAVTDFLQKREKEKFEKEETAKNKKSGKKKKVRARAGPRGFGQKIEEEEQD 168
GVIYI VTDFLQKREKEKFEKEE K KKSGKKKKVRAR GPRGFGQK+EEEE D
Sbjct: 121 GVIYIGVTDFLQKREKEKFEKEEAGKKKKSGKKKKVRARDGPRGFGQKVEEEEDD 171
BLAST of MS014247 vs. TAIR 10
Match:
AT2G29180.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 33 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )
HSP 1 Score: 101.7 bits (252), Expect = 6.0e-22
Identity = 81/174 (46.55%), Postives = 111/174 (63.79%), Query Frame = 0
Query: 1 MATTISTSLSLPIFLSTFNP--KPHQFLRLRSSSTPNILSRRPALLVLNPLRQNSARGNS 60
M+ T + SLSL F F K H L S +SRR +L LR + +
Sbjct: 1 MSATTTPSLSLSNFRPRFQTPVKGHHISPLSWS-----VSRR-KILSFRVLRLHQEK-TQ 60
Query: 61 IRRLHAT----SEQTLASESAALVEKSQEITSSGDDGVSTIISALLFVAFIGLSILTIGV 120
+ R+ AT S++ ++S+S++ ++S G DGV+ II LLFVAF+ L++LTIGV
Sbjct: 61 LWRVSATPEEISQEIVSSDSSS--SSGAVVSSGGQDGVALIIQVLLFVAFLALTVLTIGV 120
Query: 121 IYIAVTDFLQKREKEKFEKEETA-KNKKSGKKKKVRARAGPRGFGQKIEEEEQD 168
+YI VT+FL KRE+EKFEK+E A K+KK GKKK +RARAGPRGFGQKIE+++ D
Sbjct: 121 VYIGVTEFLGKREREKFEKDEAAKKSKKGGKKKAMRARAGPRGFGQKIEDDDID 165
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022148488.1 | 4.4e-75 | 99.40 | uncharacterized protein LOC111017113 [Momordica charantia] | [more] |
XP_038901778.1 | 4.1e-49 | 73.99 | uncharacterized protein LOC120088501 [Benincasa hispida] | [more] |
XP_023532311.1 | 2.0e-48 | 76.02 | uncharacterized protein LOC111794502 [Cucurbita pepo subsp. pepo] | [more] |
XP_022947295.1 | 2.7e-48 | 75.44 | uncharacterized protein LOC111451198 [Cucurbita moschata] | [more] |
KAG6605444.1 | 1.3e-47 | 74.85 | hypothetical protein SDJN03_02761, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1D484 | 2.1e-75 | 99.40 | uncharacterized protein LOC111017113 OS=Momordica charantia OX=3673 GN=LOC111017... | [more] |
A0A6J1G6G9 | 1.3e-48 | 75.44 | uncharacterized protein LOC111451198 OS=Cucurbita moschata OX=3662 GN=LOC1114511... | [more] |
A0A6J1L1T3 | 3.2e-47 | 74.27 | uncharacterized protein LOC111499635 OS=Cucurbita maxima OX=3661 GN=LOC111499635... | [more] |
A0A5A7V864 | 2.1e-43 | 70.86 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A1S3CM77 | 2.1e-43 | 70.86 | uncharacterized protein LOC103502067 OS=Cucumis melo OX=3656 GN=LOC103502067 PE=... | [more] |
Match Name | E-value | Identity | Description | |
AT2G29180.1 | 6.0e-22 | 46.55 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |