MS014203 (gene) Bitter gourd (TR) v1

Overview
NameMS014203
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionElf4 domain-containing protein
Locationscaffold5: 1373129 .. 1373373 (-)
RNA-Seq ExpressionMS014203
SyntenyMS014203
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATATGCTTAGCAACACCTTCCGTCAGGTACAAACCGTATTGGATCATAATCGTTCCTTAATCCAACAGGTGAACCAGAATCACCAGTCGATGATCTAGTCAAGAACGTTTCGTTGATCCGTGAGATTAATGGTAATATCTCTCGCGTCATCTCGATTTACTCCAATTTGTCGTCCAATTTCTGCTACGCAATCCAACACAGTTGTAGTCGTGACGCTGGAGGAATTGACAAGGCAGGGAACGCA

mRNA sequence

AATATGCTTAGCAACACCTTCCGTCAGGTACAAACCGTATTGGATCATAATCGTTCCTTAATCCAACAGGTGAACCAGAATCACCAGTCGATGATCGTCAAGAACGTTTCGTTGATCCGTGAGATTAATGGTAATATCTCTCGCGTCATCTCGATTTACTCCAATTTGTCGTCCAATTTCTGCTACGCAATCCAACACAGTTGTAGTCGTGACGCTGGAGGAATTGACAAGGCAGGGAACGCA

Coding sequence (CDS)

AATATGCTTAGCAACACCTTCCGTCAGGTACAAACCGTATTGGATCATAATCGTTCCTTAATCCAACAGGTGAACCAGAATCACCAGTCGATGATCGTCAAGAACGTTTCGTTGATCCGTGAGATTAATGGTAATATCTCTCGCGTCATCTCGATTTACTCCAATTTGTCGTCCAATTTCTGCTACGCAATCCAACACAGTTGTAGTCGTGACGCTGGAGGAATTGACAAGGCAGGGAACGCA

Protein sequence

NMLSNTFRQVQTVLDHNRSLIQQVNQNHQSMIVKNVSLIREINGNISRVISIYSNLSSNFCYAIQHSCSRDAGGIDKAGNA
Homology
BLAST of MS014203 vs. NCBI nr
Match: XP_030932748.1 (protein EARLY FLOWERING 4-like [Quercus lobata])

HSP 1 Score: 87.8 bits (216), Expect = 4.6e-14
Identity = 50/82 (60.98%), Postives = 61/82 (74.39%), Query Frame = 0

Query: 1   NMLSNTFRQVQTVLDHNRSLIQQVNQNHQSMI----VKNVSLIREINGNISRVISIYSNL 60
           N L++ FRQVQTVLD NR LIQQVN+NHQS I    VKNV+LIREINGNIS+V+S+YSNL
Sbjct: 50  NSLNHNFRQVQTVLDRNRVLIQQVNENHQSRIPDNMVKNVALIREINGNISKVVSLYSNL 109

Query: 61  SSNFCYAIQHSCSRDAGGIDKA 79
           SS+F        +  + G DK+
Sbjct: 110 SSDFSSKFHDQRTNKSDGSDKS 131

BLAST of MS014203 vs. NCBI nr
Match: XP_023919389.1 (protein EARLY FLOWERING 4-like [Quercus suber])

HSP 1 Score: 85.9 bits (211), Expect = 1.8e-13
Identity = 50/82 (60.98%), Postives = 62/82 (75.61%), Query Frame = 0

Query: 1   NMLSNTFRQVQTVLDHNRSLIQQVNQNHQSMI----VKNVSLIREINGNISRVISIYSNL 60
           N L++ FRQVQTVLD NR LIQQVN+NHQS I    VKNV+LI+EINGNIS+V+S+YSNL
Sbjct: 48  NSLNHNFRQVQTVLDRNRVLIQQVNENHQSRIPDNMVKNVALIQEINGNISKVVSLYSNL 107

Query: 61  SSNFCYAIQHSCSRDAGGIDKA 79
           SS+F     H  +  + G DK+
Sbjct: 108 SSDFSSKF-HQSTNKSDGSDKS 128

BLAST of MS014203 vs. NCBI nr
Match: XP_038717251.1 (uncharacterized protein LOC120010536 [Tripterygium wilfordii])

HSP 1 Score: 85.9 bits (211), Expect = 1.8e-13
Identity = 51/80 (63.75%), Postives = 58/80 (72.50%), Query Frame = 0

Query: 3   LSNTFRQVQTVLDHNRSLIQQVNQNHQSMI----VKNVSLIREINGNISRVISIYSNLSS 62
           LS++FRQVQTVLDHNR LIQQVN+NHQS I     KNV LIREINGNIS+VISIYS+LS 
Sbjct: 128 LSSSFRQVQTVLDHNRKLIQQVNENHQSKIAENLAKNVDLIREINGNISKVISIYSDLSV 187

Query: 63  NFCYAIQHSCSRDAGGIDKA 79
           +F   +Q       G  D A
Sbjct: 188 DFTNIVQKRSGVKDGKDDSA 207

BLAST of MS014203 vs. NCBI nr
Match: KAF5751375.1 (hypothetical protein HS088_TW02G00388 [Tripterygium wilfordii])

HSP 1 Score: 85.9 bits (211), Expect = 1.8e-13
Identity = 51/80 (63.75%), Postives = 58/80 (72.50%), Query Frame = 0

Query: 3   LSNTFRQVQTVLDHNRSLIQQVNQNHQSMI----VKNVSLIREINGNISRVISIYSNLSS 62
           LS++FRQVQTVLDHNR LIQQVN+NHQS I     KNV LIREINGNIS+VISIYS+LS 
Sbjct: 65  LSSSFRQVQTVLDHNRKLIQQVNENHQSKIAENLAKNVDLIREINGNISKVISIYSDLSV 124

Query: 63  NFCYAIQHSCSRDAGGIDKA 79
           +F   +Q       G  D A
Sbjct: 125 DFTNIVQKRSGVKDGKDDSA 144

BLAST of MS014203 vs. NCBI nr
Match: KAG5253815.1 (protein ELF [Salix suchowensis])

HSP 1 Score: 85.1 bits (209), Expect = 3.0e-13
Identity = 48/67 (71.64%), Postives = 55/67 (82.09%), Query Frame = 0

Query: 3   LSNTFRQVQTVLDHNRSLIQQVNQNHQSMI----VKNVSLIREINGNISRVISIYSNLSS 62
           LS +F+QVQ+VLDHNR LIQQVN NH+S I    VKNVSLIREINGNIS+VISIYS+LS 
Sbjct: 61  LSKSFKQVQSVLDHNRDLIQQVNSNHRSKIPDNLVKNVSLIREINGNISKVISIYSDLSV 120

Query: 63  NFCYAIQ 66
           NF   +Q
Sbjct: 121 NFSNIVQ 127

BLAST of MS014203 vs. ExPASy Swiss-Prot
Match: O04211 (Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana OX=3702 GN=ELF4 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.5e-12
Identity = 38/62 (61.29%), Postives = 51/62 (82.26%), Query Frame = 0

Query: 3  LSNTFRQVQTVLDHNRSLIQQVNQNHQSMIV----KNVSLIREINGNISRVISIYSNLSS 61
          L   FRQVQ+VLD NRSLIQQVN NHQS +     KNV+LI+E+NGNIS+V+++YS+L++
Sbjct: 29 LDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVNMYSDLNT 88

BLAST of MS014203 vs. ExPASy Swiss-Prot
Match: O80877 (Protein ELF4-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=EFL1 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.2e-10
Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 0

Query: 3   LSNTFRQVQTVLDHNRSLIQQVNQNHQSMIVKNVS----LIREINGNISRVISIYSNLSS 61
           LSN F++ Q  LD NR LIQ+VN+NH S I  NVS    LI EINGNIS+V+ IYS+LS 
Sbjct: 41  LSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVMEIYSDLSL 100

BLAST of MS014203 vs. ExPASy Swiss-Prot
Match: Q8S8F5 (Protein ELF4-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=EFL3 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-09
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 0

Query: 6  TFRQVQTVLDHNRSLIQQVNQNHQSMIV----KNVSLIREINGNISRVISIYSNLSSNFC 65
          +F QVQ +LDHNR LI ++NQNH+S I     +NV LIRE+N N+ RV  +Y +LS+NF 
Sbjct: 27 SFVQVQNILDHNRLLINEINQNHESKIPDNLGRNVGLIRELNNNVRRVAHLYVDLSNNFS 86

Query: 66 YAIQHSCSRDA 73
           +++ S   D+
Sbjct: 87 KSMEASSEGDS 97

BLAST of MS014203 vs. ExPASy Swiss-Prot
Match: Q94BS8 (Protein ELF4-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=EFL2 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.7e-08
Identity = 33/77 (42.86%), Postives = 49/77 (63.64%), Query Frame = 0

Query: 6   TFRQVQTVLDHNRSLIQQVNQNHQSM----IVKNVSLIREINGNISRVISIYSNLSSNFC 65
           +F QVQ +LD NR LI ++NQNH+S     + +NV LIRE+N NI  V S+Y +LS +F 
Sbjct: 30  SFVQVQDILDQNRLLINEINQNHESKQADHLGRNVGLIRELNNNIRTVASLYGDLSHSFA 89

Query: 66  YAIQHSCSRDAGGIDKA 79
            ++  S   ++ G  K+
Sbjct: 90  RSVDASSEGESTGTLKS 106

BLAST of MS014203 vs. ExPASy Swiss-Prot
Match: Q570U6 (Protein ELF4-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=EFL4 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.7e-08
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 0

Query: 6   TFRQVQTVLDHNRSLIQQVNQNHQSM----IVKNVSLIREINGNISRVISIYSNLSSNFC 65
           +F  VQ +LD NR LI ++NQNH+S     + +NV LI+E+N NI RV S+Y +LS +F 
Sbjct: 26  SFVDVQDILDQNRLLINEINQNHESKQPDNLGRNVGLIKELNNNIRRVASLYGDLSHSFA 85

Query: 66  YAIQHSCSRDAGGIDKA 79
            ++  S   ++ G  K+
Sbjct: 86  RSVDASSEGESSGTLKS 102

BLAST of MS014203 vs. ExPASy TrEMBL
Match: A0A7N2MFC5 (Elf4 domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.2e-14
Identity = 50/82 (60.98%), Postives = 61/82 (74.39%), Query Frame = 0

Query: 1   NMLSNTFRQVQTVLDHNRSLIQQVNQNHQSMI----VKNVSLIREINGNISRVISIYSNL 60
           N L++ FRQVQTVLD NR LIQQVN+NHQS I    VKNV+LIREINGNIS+V+S+YSNL
Sbjct: 50  NSLNHNFRQVQTVLDRNRVLIQQVNENHQSRIPDNMVKNVALIREINGNISKVVSLYSNL 109

Query: 61  SSNFCYAIQHSCSRDAGGIDKA 79
           SS+F        +  + G DK+
Sbjct: 110 SSDFSSKFHDQRTNKSDGSDKS 131

BLAST of MS014203 vs. ExPASy TrEMBL
Match: A0A7J7DYC8 (Elf4 domain-containing protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW02G00388 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 8.5e-14
Identity = 51/80 (63.75%), Postives = 58/80 (72.50%), Query Frame = 0

Query: 3   LSNTFRQVQTVLDHNRSLIQQVNQNHQSMI----VKNVSLIREINGNISRVISIYSNLSS 62
           LS++FRQVQTVLDHNR LIQQVN+NHQS I     KNV LIREINGNIS+VISIYS+LS 
Sbjct: 65  LSSSFRQVQTVLDHNRKLIQQVNENHQSKIAENLAKNVDLIREINGNISKVISIYSDLSV 124

Query: 63  NFCYAIQHSCSRDAGGIDKA 79
           +F   +Q       G  D A
Sbjct: 125 DFTNIVQKRSGVKDGKDDSA 144

BLAST of MS014203 vs. ExPASy TrEMBL
Match: A0A444X287 (Elf4 domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A10g049778 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.9e-13
Identity = 47/82 (57.32%), Postives = 64/82 (78.05%), Query Frame = 0

Query: 3   LSNTFRQVQTVLDHNRSLIQQVNQNHQSMI----VKNVSLIREINGNISRVISIYSNLSS 62
           ++ +FRQVQ+VLD NR+LIQQVN+NHQS I    VKNVSLI+E+NGNIS+V+S+YS+L+S
Sbjct: 63  MNRSFRQVQSVLDRNRALIQQVNENHQSRIPDKMVKNVSLIQELNGNISKVVSMYSDLNS 122

Query: 63  NFCYAIQHSCSRDAGGIDKAGN 81
           NF  A QH  S++   + +  N
Sbjct: 123 NFTNACQHR-SKNGNSLRRGDN 143

BLAST of MS014203 vs. ExPASy TrEMBL
Match: A0A3N7EBY2 (Elf4 domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G251600 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.9e-13
Identity = 50/76 (65.79%), Postives = 57/76 (75.00%), Query Frame = 0

Query: 3   LSNTFRQVQTVLDHNRSLIQQVNQNHQSMI----VKNVSLIREINGNISRVISIYSNLSS 62
           LS +F+QVQ+VLDHNR LIQQVN NHQS I    VKNVSLIREINGNIS+V+SIYS+LS 
Sbjct: 43  LSKSFKQVQSVLDHNRDLIQQVNANHQSKIPDNLVKNVSLIREINGNISKVMSIYSDLSV 102

Query: 63  NFCYAIQHSCSRDAGG 75
           NF   +Q       GG
Sbjct: 103 NFSNIVQERRRVKNGG 118

BLAST of MS014203 vs. ExPASy TrEMBL
Match: A0A444X2B5 (Elf4 domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_B10g102645 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.9e-13
Identity = 47/82 (57.32%), Postives = 64/82 (78.05%), Query Frame = 0

Query: 3  LSNTFRQVQTVLDHNRSLIQQVNQNHQSMI----VKNVSLIREINGNISRVISIYSNLSS 62
          ++ +FRQVQ+VLD NR+LIQQVN+NHQS I    VKNVSLI+E+NGNIS+V+S+YS+L+S
Sbjct: 1  MNRSFRQVQSVLDRNRALIQQVNENHQSRIPDKMVKNVSLIQELNGNISKVVSMYSDLNS 60

Query: 63 NFCYAIQHSCSRDAGGIDKAGN 81
          NF  A QH  S++   + +  N
Sbjct: 61 NFTNACQHR-SKNGNSLRRGDN 81

BLAST of MS014203 vs. TAIR 10
Match: AT2G40080.1 (Protein of unknown function (DUF1313) )

HSP 1 Score: 72.0 bits (175), Expect = 2.5e-13
Identity = 38/62 (61.29%), Postives = 51/62 (82.26%), Query Frame = 0

Query: 3  LSNTFRQVQTVLDHNRSLIQQVNQNHQSMIV----KNVSLIREINGNISRVISIYSNLSS 61
          L   FRQVQ+VLD NRSLIQQVN NHQS +     KNV+LI+E+NGNIS+V+++YS+L++
Sbjct: 29 LDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVNMYSDLNT 88

BLAST of MS014203 vs. TAIR 10
Match: AT2G29950.1 (ELF4-like 1 )

HSP 1 Score: 65.1 bits (157), Expect = 3.0e-11
Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 0

Query: 3   LSNTFRQVQTVLDHNRSLIQQVNQNHQSMIVKNVS----LIREINGNISRVISIYSNLSS 61
           LSN F++ Q  LD NR LIQ+VN+NH S I  NVS    LI EINGNIS+V+ IYS+LS 
Sbjct: 41  LSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVMEIYSDLSL 100

BLAST of MS014203 vs. TAIR 10
Match: AT2G06255.1 (ELF4-like 3 )

HSP 1 Score: 63.5 bits (153), Expect = 8.7e-11
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 0

Query: 6  TFRQVQTVLDHNRSLIQQVNQNHQSMIV----KNVSLIREINGNISRVISIYSNLSSNFC 65
          +F QVQ +LDHNR LI ++NQNH+S I     +NV LIRE+N N+ RV  +Y +LS+NF 
Sbjct: 27 SFVQVQNILDHNRLLINEINQNHESKIPDNLGRNVGLIRELNNNVRRVAHLYVDLSNNFS 86

Query: 66 YAIQHSCSRDA 73
           +++ S   D+
Sbjct: 87 KSMEASSEGDS 97

BLAST of MS014203 vs. TAIR 10
Match: AT1G17455.1 (ELF4-like 4 )

HSP 1 Score: 57.8 bits (138), Expect = 4.8e-09
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 0

Query: 6   TFRQVQTVLDHNRSLIQQVNQNHQSM----IVKNVSLIREINGNISRVISIYSNLSSNFC 65
           +F  VQ +LD NR LI ++NQNH+S     + +NV LI+E+N NI RV S+Y +LS +F 
Sbjct: 26  SFVDVQDILDQNRLLINEINQNHESKQPDNLGRNVGLIKELNNNIRRVASLYGDLSHSFA 85

Query: 66  YAIQHSCSRDAGGIDKA 79
            ++  S   ++ G  K+
Sbjct: 86  RSVDASSEGESSGTLKS 102

BLAST of MS014203 vs. TAIR 10
Match: AT1G72630.1 (ELF4-like 2 )

HSP 1 Score: 57.8 bits (138), Expect = 4.8e-09
Identity = 33/77 (42.86%), Postives = 49/77 (63.64%), Query Frame = 0

Query: 6   TFRQVQTVLDHNRSLIQQVNQNHQSM----IVKNVSLIREINGNISRVISIYSNLSSNFC 65
           +F QVQ +LD NR LI ++NQNH+S     + +NV LIRE+N NI  V S+Y +LS +F 
Sbjct: 30  SFVQVQDILDQNRLLINEINQNHESKQADHLGRNVGLIRELNNNIRTVASLYGDLSHSFA 89

Query: 66  YAIQHSCSRDAGGIDKA 79
            ++  S   ++ G  K+
Sbjct: 90  RSVDASSEGESTGTLKS 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_030932748.14.6e-1460.98protein EARLY FLOWERING 4-like [Quercus lobata][more]
XP_023919389.11.8e-1360.98protein EARLY FLOWERING 4-like [Quercus suber][more]
XP_038717251.11.8e-1363.75uncharacterized protein LOC120010536 [Tripterygium wilfordii][more]
KAF5751375.11.8e-1363.75hypothetical protein HS088_TW02G00388 [Tripterygium wilfordii][more]
KAG5253815.13.0e-1371.64protein ELF [Salix suchowensis][more]
Match NameE-valueIdentityDescription
O042113.5e-1261.29Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana OX=3702 GN=ELF4 PE=1 SV=1[more]
O808774.2e-1061.29Protein ELF4-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=EFL1 PE=2 SV=1[more]
Q8S8F51.2e-0947.89Protein ELF4-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=EFL3 PE=3 SV=1[more]
Q94BS86.7e-0842.86Protein ELF4-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=EFL2 PE=2 SV=1[more]
Q570U66.7e-0841.56Protein ELF4-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=EFL4 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A7N2MFC52.2e-1460.98Elf4 domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1[more]
A0A7J7DYC88.5e-1463.75Elf4 domain-containing protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW02... [more]
A0A444X2871.9e-1357.32Elf4 domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A10g049778 PE=... [more]
A0A3N7EBY21.9e-1365.79Elf4 domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G25160... [more]
A0A444X2B51.9e-1357.32Elf4 domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_B10g102645 PE=... [more]
Match NameE-valueIdentityDescription
AT2G40080.12.5e-1361.29Protein of unknown function (DUF1313) [more]
AT2G29950.13.0e-1161.29ELF4-like 1 [more]
AT2G06255.18.7e-1147.89ELF4-like 3 [more]
AT1G17455.14.8e-0941.56ELF4-like 4 [more]
AT1G72630.14.8e-0942.86ELF4-like 2 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009741Protein EARLY FLOWERING 4 domainPFAMPF07011Elf4coord: 2..69
e-value: 5.7E-27
score: 93.4
IPR040462Protein EARLY FLOWERING 4PANTHERPTHR33469PROTEIN ELF4-LIKE 4coord: 1..68
NoneNo IPR availablePANTHERPTHR33469:SF1PROTEIN ELF4-LIKE 1coord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS014203.1MS014203.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042753 positive regulation of circadian rhythm