MS014192 (gene) Bitter gourd (TR) v1

Overview
NameMS014192
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionAuxin efflux carrier component
Locationscaffold5: 1314283 .. 1314520 (+)
RNA-Seq ExpressionMS014192
SyntenyMS014192
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAGAGGTGGAGATTGGGAAAGATGGGAAGCTTGGTGTCATGGCGAGGAAGTCAGCGAGTGGTTGGAAATTTTATTGGGTCGGTCTTACGGCAGAGCTCACTCTGGCCTTTCGTTGACTCTCTGGCCTTCGAATTTGACCAACGCCGAGACTTATTCTCGTAATCGTCGAGGAAGCCGATGCTCCGGCGATCGAGTTTTAATCATTCTGATTTCTGTTTGGTAAATGCGAGTGGACGG

mRNA sequence

ACAGAGGTGGAGATTGGGAAAGATGGGAAGCTTGGTGTCATGGCGAGGAAGTCAGCGAGTGGTGAAATTTTATTGGGTCGGTCTTACGGCAGAGCTCACTCTGGCCTTTCGTTGACTCTCTGGCCTTCGAATTTGACCAACGCCGAGACTTATTCTCGTTCGTCGAGGAAGCCGATGCTCCGGCGATCGAGTTTTAATCATTCTGATTTCTGTTTGGTAAATGCGAGTGGACGG

Coding sequence (CDS)

ACAGAGGTGGAGATTGGGAAAGATGGGAAGCTTGGTGTCATGGCGAGGAAGTCAGCGAGTGGTGAAATTTTATTGGGTCGGTCTTACGGCAGAGCTCACTCTGGCCTTTCGTTGACTCTCTGGCCTTCGAATTTGACCAACGCCGAGACTTATTCTCGTTCGTCGAGGAAGCCGATGCTCCGGCGATCGAGTTTTAATCATTCTGATTTCTGTTTGGTAAATGCGAGTGGACGG

Protein sequence

TEVEIGKDGKLGVMARKSASGEILLGRSYGRAHSGLSLTLWPSNLTNAETYSRSSRKPMLRRSSFNHSDFCLVNASGR
Homology
BLAST of MS014192 vs. NCBI nr
Match: XP_021971563.1 (probable auxin efflux carrier component 1b [Helianthus annuus] >KAF5821185.1 putative membrane transport protein [Helianthus annuus])

HSP 1 Score: 77.8 bits (190), Expect = 4.6e-11
Identity = 47/73 (64.38%), Postives = 53/73 (72.60%), Query Frame = 0

Query: 1   TEVEIGKDGKLGVMARKSAS--GEILLGRSYGRAHSGLSLTLWPSNLTNAETYS-RSSRK 60
           TE E+G+DGKL V  RKSAS   EI   RS+G  +SGLSLT  PSNLTNAE YS +SSR 
Sbjct: 192 TEAEVGEDGKLHVTVRKSASSHSEIFSRRSHGGMNSGLSLTPRPSNLTNAEIYSLQSSRN 251

Query: 61  PMLRRSSFNHSDF 71
           P  R SSFNH+DF
Sbjct: 252 PTPRGSSFNHTDF 264

BLAST of MS014192 vs. NCBI nr
Match: XP_022966088.1 (probable auxin efflux carrier component 1b [Cucurbita maxima])

HSP 1 Score: 77.4 bits (189), Expect = 6.0e-11
Identity = 51/82 (62.20%), Postives = 56/82 (68.29%), Query Frame = 0

Query: 1   TEVEIGKDGKLGVMARKSAS--GEILLGRSY-GRAHSGLSLTLWPSNLTNAETYS-RSSR 60
           TE EIG+DGKL V+ RKSAS   E+   RS+ G    G SLT  PSNLTNAE YS +SSR
Sbjct: 192 TEAEIGEDGKLRVVVRKSASSRSEVFSRRSHGGGGGGGASLTPRPSNLTNAEIYSLQSSR 251

Query: 61  KPMLRRSSFNHSDFCLVNASGR 79
            P  R SSFNHSDF L NAS R
Sbjct: 252 NPTPRGSSFNHSDFFLGNASPR 273

BLAST of MS014192 vs. NCBI nr
Match: XP_004144328.1 (probable auxin efflux carrier component 1b [Cucumis sativus] >KGN54700.1 hypothetical protein Csa_012183 [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 6.0e-11
Identity = 50/81 (61.73%), Postives = 56/81 (69.14%), Query Frame = 0

Query: 1   TEVEIGKDGKLGVMARKSAS--GEILLGRSYGRAHSGLSLTLWPSNLTNAETYS-RSSRK 60
           TE EIG+DGKL V+ RKS S   E+   RS+G    G+SLT  PSNLTNAE YS +SSR 
Sbjct: 192 TEAEIGEDGKLRVVVRKSTSSRSEVFSRRSHG-GGGGVSLTPRPSNLTNAEIYSLQSSRN 251

Query: 61  PMLRRSSFNHSDFCLVNASGR 79
           P  R SSFNHSDF L NAS R
Sbjct: 252 PTPRGSSFNHSDFFLGNASPR 271

BLAST of MS014192 vs. NCBI nr
Match: XP_038880939.1 (probable auxin efflux carrier component 1b isoform X1 [Benincasa hispida])

HSP 1 Score: 77.4 bits (189), Expect = 6.0e-11
Identity = 50/81 (61.73%), Postives = 56/81 (69.14%), Query Frame = 0

Query: 1   TEVEIGKDGKLGVMARKSAS--GEILLGRSYGRAHSGLSLTLWPSNLTNAETYS-RSSRK 60
           TE EIG+DGKL V+ RKS S   E+   RS+G    G+SLT  PSNLTNAE YS +SSR 
Sbjct: 192 TEAEIGEDGKLRVVVRKSTSSRSEVFSRRSHG-GGGGVSLTPRPSNLTNAEIYSLQSSRN 251

Query: 61  PMLRRSSFNHSDFCLVNASGR 79
           P  R SSFNHSDF L NAS R
Sbjct: 252 PTPRGSSFNHSDFFLGNASPR 271

BLAST of MS014192 vs. NCBI nr
Match: XP_008455726.1 (PREDICTED: probable auxin efflux carrier component 1b [Cucumis melo])

HSP 1 Score: 77.4 bits (189), Expect = 6.0e-11
Identity = 50/81 (61.73%), Postives = 56/81 (69.14%), Query Frame = 0

Query: 1   TEVEIGKDGKLGVMARKSAS--GEILLGRSYGRAHSGLSLTLWPSNLTNAETYS-RSSRK 60
           TE EIG+DGKL V+ RKS S   E+   RS+G    G+SLT  PSNLTNAE YS +SSR 
Sbjct: 192 TEAEIGEDGKLRVVVRKSTSSRSEVFSRRSHG-GGGGVSLTPRPSNLTNAEIYSLQSSRN 251

Query: 61  PMLRRSSFNHSDFCLVNASGR 79
           P  R SSFNHSDF L NAS R
Sbjct: 252 PTPRGSSFNHSDFFLGNASPR 271

BLAST of MS014192 vs. ExPASy Swiss-Prot
Match: Q9C6B8 (Auxin efflux carrier component 1 OS=Arabidopsis thaliana OX=3702 GN=PIN1 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.1e-10
Identity = 42/78 (53.85%), Postives = 48/78 (61.54%), Query Frame = 0

Query: 1   TEVEIGKDGKLGVMARKSASGEILLGRSYGRAHSGLSLTLWPSNLTNAETYS-RSSRKPM 60
           TE EI +DGKL V  R+S +        Y R   GLS T  PSNLTNAE YS +SSR P 
Sbjct: 192 TEAEIKEDGKLHVTVRRSNASR---SDIYSRRSQGLSATPRPSNLTNAEIYSLQSSRNPT 251

Query: 61  LRRSSFNHSDFCLVNASG 78
            R SSFNH+DF  + ASG
Sbjct: 252 PRGSSFNHTDFYSMMASG 266

BLAST of MS014192 vs. ExPASy Swiss-Prot
Match: Q9LU77 (Auxin efflux carrier component 2 OS=Arabidopsis thaliana OX=3702 GN=PIN2 PE=1 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 9.4e-07
Identity = 36/82 (43.90%), Postives = 51/82 (62.20%), Query Frame = 0

Query: 1   TEVEIGKDGKLGVMARKSASGEILLGRSYGRAHSG----LSLTLWPSNLTNAETYS-RSS 60
           T+ EIG DGKL V+ R+S++   ++  S+ ++H G      +T   SNLT  E YS +SS
Sbjct: 192 TDAEIGDDGKLHVVVRRSSAASSMIS-SFNKSHGGGLNSSMITPRASNLTGVEIYSVQSS 251

Query: 61  RKPMLRRSSFNHSDF-CLVNAS 77
           R+P  R SSFN +DF  + NAS
Sbjct: 252 REPTPRASSFNQTDFYAMFNAS 272

BLAST of MS014192 vs. ExPASy Swiss-Prot
Match: Q67UL3 (Probable auxin efflux carrier component 1c OS=Oryza sativa subsp. japonica OX=39947 GN=PIN1C PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.2e-06
Identity = 36/72 (50.00%), Postives = 43/72 (59.72%), Query Frame = 0

Query: 1   TEVEIGKDGKLGVMARKSASGEILLGRSYGRAHSGLSLTL-WPSNLTNAETYS-RSSRKP 60
           TE E+ +DGK+ V  R+S +        Y R   G S T   PSNLTNAE YS +SSR P
Sbjct: 193 TEAEVKEDGKIHVTVRRSNASR---SDVYSRRSMGFSSTTPRPSNLTNAEIYSLQSSRNP 252

Query: 61  MLRRSSFNHSDF 71
             R SSFNH+DF
Sbjct: 253 TPRGSSFNHTDF 261

BLAST of MS014192 vs. ExPASy Swiss-Prot
Match: Q5SMQ9 (Auxin efflux carrier component 1a OS=Oryza sativa subsp. japonica OX=39947 GN=PIN1A PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.6e-06
Identity = 36/73 (49.32%), Postives = 46/73 (63.01%), Query Frame = 0

Query: 1   TEVEIGKDGKLGVMARKS--ASGEILLGRSYGRAHSGLSLTLWPSNLTNAETYS-RSSRK 60
           TE E+ +DG++ V  R+S  +  +I   RS G +    S T  PSNLTNAE YS +SSR 
Sbjct: 193 TETEVKEDGRIHVTVRRSNASRSDIYSRRSMGFS----STTPRPSNLTNAEIYSLQSSRN 252

Query: 61  PMLRRSSFNHSDF 71
           P  R SSFNH+DF
Sbjct: 253 PTPRGSSFNHTDF 261

BLAST of MS014192 vs. ExPASy Swiss-Prot
Match: Q0IQA5 (Probable auxin efflux carrier component 1d OS=Oryza sativa subsp. japonica OX=39947 GN=PIN1D PE=2 SV=2)

HSP 1 Score: 52.0 bits (123), Expect = 3.6e-06
Identity = 32/78 (41.03%), Postives = 43/78 (55.13%), Query Frame = 0

Query: 2   EVEIGKDGKLGVMARKSASGEILLGRSYGRAHSGLSLTLWPSNLTNAETYS-RSSRKPML 61
           E E+G DGK+ V  RKS S       S+G      S+    SNL+  E YS +SSR P  
Sbjct: 204 EAEVGDDGKMRVTVRKSTSSRSEAACSHGTQSHSQSMQPRVSNLSGVEIYSLQSSRNPTP 263

Query: 62  RRSSFNHSDFCLVNASGR 79
           R SSFNH++F  +  +G+
Sbjct: 264 RGSSFNHAEFFNIVGNGK 281

BLAST of MS014192 vs. ExPASy TrEMBL
Match: A0A251VM50 (Auxin efflux carrier component OS=Helianthus annuus OX=4232 GN=PIN1B PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.2e-11
Identity = 47/73 (64.38%), Postives = 53/73 (72.60%), Query Frame = 0

Query: 1   TEVEIGKDGKLGVMARKSAS--GEILLGRSYGRAHSGLSLTLWPSNLTNAETYS-RSSRK 60
           TE E+G+DGKL V  RKSAS   EI   RS+G  +SGLSLT  PSNLTNAE YS +SSR 
Sbjct: 192 TEAEVGEDGKLHVTVRKSASSHSEIFSRRSHGGMNSGLSLTPRPSNLTNAEIYSLQSSRN 251

Query: 61  PMLRRSSFNHSDF 71
           P  R SSFNH+DF
Sbjct: 252 PTPRGSSFNHTDF 264

BLAST of MS014192 vs. ExPASy TrEMBL
Match: A0A5A7SKX8 (Auxin efflux carrier component OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold749G00260 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.9e-11
Identity = 50/81 (61.73%), Postives = 56/81 (69.14%), Query Frame = 0

Query: 1   TEVEIGKDGKLGVMARKSAS--GEILLGRSYGRAHSGLSLTLWPSNLTNAETYS-RSSRK 60
           TE EIG+DGKL V+ RKS S   E+   RS+G    G+SLT  PSNLTNAE YS +SSR 
Sbjct: 192 TEAEIGEDGKLRVVVRKSTSSRSEVFSRRSHG-GGGGVSLTPRPSNLTNAEIYSLQSSRN 251

Query: 61  PMLRRSSFNHSDFCLVNASGR 79
           P  R SSFNHSDF L NAS R
Sbjct: 252 PTPRGSSFNHSDFFLGNASPR 271

BLAST of MS014192 vs. ExPASy TrEMBL
Match: A0A6J1HQV8 (Auxin efflux carrier component OS=Cucurbita maxima OX=3661 GN=LOC111465879 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.9e-11
Identity = 51/82 (62.20%), Postives = 56/82 (68.29%), Query Frame = 0

Query: 1   TEVEIGKDGKLGVMARKSAS--GEILLGRSY-GRAHSGLSLTLWPSNLTNAETYS-RSSR 60
           TE EIG+DGKL V+ RKSAS   E+   RS+ G    G SLT  PSNLTNAE YS +SSR
Sbjct: 192 TEAEIGEDGKLRVVVRKSASSRSEVFSRRSHGGGGGGGASLTPRPSNLTNAEIYSLQSSR 251

Query: 61  KPMLRRSSFNHSDFCLVNASGR 79
            P  R SSFNHSDF L NAS R
Sbjct: 252 NPTPRGSSFNHSDFFLGNASPR 273

BLAST of MS014192 vs. ExPASy TrEMBL
Match: D7URM4 (Auxin efflux carrier component OS=Cucumis sativus OX=3659 GN=CsPIN4 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.9e-11
Identity = 50/81 (61.73%), Postives = 56/81 (69.14%), Query Frame = 0

Query: 1   TEVEIGKDGKLGVMARKSAS--GEILLGRSYGRAHSGLSLTLWPSNLTNAETYS-RSSRK 60
           TE EIG+DGKL V+ RKS S   E+   RS+G    G+SLT  PSNLTNAE YS +SSR 
Sbjct: 192 TEAEIGEDGKLRVVVRKSTSSRSEVFSRRSHG-GGGGVSLTPRPSNLTNAEIYSLQSSRN 251

Query: 61  PMLRRSSFNHSDFCLVNASGR 79
           P  R SSFNHSDF L NAS R
Sbjct: 252 PTPRGSSFNHSDFFLGNASPR 271

BLAST of MS014192 vs. ExPASy TrEMBL
Match: A0A0A0KYF4 (Auxin efflux carrier component OS=Cucumis sativus OX=3659 GN=Csa_4G430820 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.9e-11
Identity = 50/81 (61.73%), Postives = 56/81 (69.14%), Query Frame = 0

Query: 1   TEVEIGKDGKLGVMARKSAS--GEILLGRSYGRAHSGLSLTLWPSNLTNAETYS-RSSRK 60
           TE EIG+DGKL V+ RKS S   E+   RS+G    G+SLT  PSNLTNAE YS +SSR 
Sbjct: 192 TEAEIGEDGKLRVVVRKSTSSRSEVFSRRSHG-GGGGVSLTPRPSNLTNAEIYSLQSSRN 251

Query: 61  PMLRRSSFNHSDFCLVNASGR 79
           P  R SSFNHSDF L NAS R
Sbjct: 252 PTPRGSSFNHSDFFLGNASPR 271

BLAST of MS014192 vs. TAIR 10
Match: AT1G73590.1 (Auxin efflux carrier family protein )

HSP 1 Score: 65.1 bits (157), Expect = 2.9e-11
Identity = 42/78 (53.85%), Postives = 48/78 (61.54%), Query Frame = 0

Query: 1   TEVEIGKDGKLGVMARKSASGEILLGRSYGRAHSGLSLTLWPSNLTNAETYS-RSSRKPM 60
           TE EI +DGKL V  R+S +        Y R   GLS T  PSNLTNAE YS +SSR P 
Sbjct: 192 TEAEIKEDGKLHVTVRRSNASR---SDIYSRRSQGLSATPRPSNLTNAEIYSLQSSRNPT 251

Query: 61  LRRSSFNHSDFCLVNASG 78
            R SSFNH+DF  + ASG
Sbjct: 252 PRGSSFNHTDFYSMMASG 266

BLAST of MS014192 vs. TAIR 10
Match: AT5G57090.1 (Auxin efflux carrier family protein )

HSP 1 Score: 53.9 bits (128), Expect = 6.7e-08
Identity = 36/82 (43.90%), Postives = 51/82 (62.20%), Query Frame = 0

Query: 1   TEVEIGKDGKLGVMARKSASGEILLGRSYGRAHSG----LSLTLWPSNLTNAETYS-RSS 60
           T+ EIG DGKL V+ R+S++   ++  S+ ++H G      +T   SNLT  E YS +SS
Sbjct: 192 TDAEIGDDGKLHVVVRRSSAASSMIS-SFNKSHGGGLNSSMITPRASNLTGVEIYSVQSS 251

Query: 61  RKPMLRRSSFNHSDF-CLVNAS 77
           R+P  R SSFN +DF  + NAS
Sbjct: 252 REPTPRASSFNQTDFYAMFNAS 272

BLAST of MS014192 vs. TAIR 10
Match: AT1G70940.1 (Auxin efflux carrier family protein )

HSP 1 Score: 48.9 bits (115), Expect = 2.1e-06
Identity = 33/70 (47.14%), Postives = 40/70 (57.14%), Query Frame = 0

Query: 1   TEVEIGKDGKLGVMARKSASGEILLGRSYGRAHSGLSLTLWPSNLTNAETYSRSSRKPML 60
           T+ EIG DGKL V  RKS +          R+  G ++T  PSNLT AE YS S+     
Sbjct: 192 TDAEIGDDGKLHVTVRKSNASR--------RSFCGPNMTPRPSNLTGAEIYSLSTTP--- 250

Query: 61  RRSSFNHSDF 71
           R S+FNHSDF
Sbjct: 252 RGSNFNHSDF 250

BLAST of MS014192 vs. TAIR 10
Match: AT2G01420.1 (Auxin efflux carrier family protein )

HSP 1 Score: 47.4 bits (111), Expect = 6.2e-06
Identity = 33/70 (47.14%), Postives = 37/70 (52.86%), Query Frame = 0

Query: 1   TEVEIGKDGKLGVMARKSASGEILLGRSYGRAHSGLSLTLWPSNLTNAETYSRSSRKPML 60
           T+ EIG DGKL V  RKS             +   L +T  PSNLT AE YS SS     
Sbjct: 192 TDAEIGNDGKLHVTVRKS-----------NASRRSLMMTPRPSNLTGAEIYSLSSTP--- 247

Query: 61  RRSSFNHSDF 71
           R S+FNHSDF
Sbjct: 252 RGSNFNHSDF 247

BLAST of MS014192 vs. TAIR 10
Match: AT2G01420.2 (Auxin efflux carrier family protein )

HSP 1 Score: 47.4 bits (111), Expect = 6.2e-06
Identity = 33/70 (47.14%), Postives = 37/70 (52.86%), Query Frame = 0

Query: 1   TEVEIGKDGKLGVMARKSASGEILLGRSYGRAHSGLSLTLWPSNLTNAETYSRSSRKPML 60
           T+ EIG DGKL V  RKS             +   L +T  PSNLT AE YS SS     
Sbjct: 192 TDAEIGNDGKLHVTVRKS-----------NASRRSLMMTPRPSNLTGAEIYSLSSTP--- 247

Query: 61  RRSSFNHSDF 71
           R S+FNHSDF
Sbjct: 252 RGSNFNHSDF 247

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_021971563.14.6e-1164.38probable auxin efflux carrier component 1b [Helianthus annuus] >KAF5821185.1 put... [more]
XP_022966088.16.0e-1162.20probable auxin efflux carrier component 1b [Cucurbita maxima][more]
XP_004144328.16.0e-1161.73probable auxin efflux carrier component 1b [Cucumis sativus] >KGN54700.1 hypothe... [more]
XP_038880939.16.0e-1161.73probable auxin efflux carrier component 1b isoform X1 [Benincasa hispida][more]
XP_008455726.16.0e-1161.73PREDICTED: probable auxin efflux carrier component 1b [Cucumis melo][more]
Match NameE-valueIdentityDescription
Q9C6B84.1e-1053.85Auxin efflux carrier component 1 OS=Arabidopsis thaliana OX=3702 GN=PIN1 PE=1 SV... [more]
Q9LU779.4e-0743.90Auxin efflux carrier component 2 OS=Arabidopsis thaliana OX=3702 GN=PIN2 PE=1 SV... [more]
Q67UL31.2e-0650.00Probable auxin efflux carrier component 1c OS=Oryza sativa subsp. japonica OX=39... [more]
Q5SMQ91.6e-0649.32Auxin efflux carrier component 1a OS=Oryza sativa subsp. japonica OX=39947 GN=PI... [more]
Q0IQA53.6e-0641.03Probable auxin efflux carrier component 1d OS=Oryza sativa subsp. japonica OX=39... [more]
Match NameE-valueIdentityDescription
A0A251VM502.2e-1164.38Auxin efflux carrier component OS=Helianthus annuus OX=4232 GN=PIN1B PE=3 SV=1[more]
A0A5A7SKX82.9e-1161.73Auxin efflux carrier component OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A6J1HQV82.9e-1162.20Auxin efflux carrier component OS=Cucurbita maxima OX=3661 GN=LOC111465879 PE=3 ... [more]
D7URM42.9e-1161.73Auxin efflux carrier component OS=Cucumis sativus OX=3659 GN=CsPIN4 PE=2 SV=1[more]
A0A0A0KYF42.9e-1161.73Auxin efflux carrier component OS=Cucumis sativus OX=3659 GN=Csa_4G430820 PE=3 S... [more]
Match NameE-valueIdentityDescription
AT1G73590.12.9e-1153.85Auxin efflux carrier family protein [more]
AT5G57090.16.7e-0843.90Auxin efflux carrier family protein [more]
AT1G70940.12.1e-0647.14Auxin efflux carrier family protein [more]
AT2G01420.16.2e-0647.14Auxin efflux carrier family protein [more]
AT2G01420.26.2e-0647.14Auxin efflux carrier family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS014192.1MS014192.1mRNA