MS014170 (gene) Bitter gourd (TR) v1

Overview


Name	MS014170
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Biogenesis of lysosome-related organelles complex 1 subunit 1
Location	scaffold5: 1136110 .. 1138190 (+)
RNA-Seq Expression	MS014170
Synteny	MS014170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCTCCGTCAGGGCCATCACGGCCGCACCTCCCCGTAGCGCGTAATCGCGGGATGCTTCAGTCGGAGACTGAGAGATTGAGCAGTGAGGCTGGAGGATTGGAAGCTTCCTTGCTTCAGATGGTCCACGATCACCAGTTCGCCTCTCTCAAGCTCCGGCAAGACTCCGGTTAGTTTCTATTTGATCTCTCTCTTAACTCCTTCACTCTCTCCTTTCATAATTCTTTGCTGCTAATGATTTCAAAAATTTTCTGAAATTAAATCGTAATTTCGTCGTTCTGAATCATCGTCATAGAGAAGGCGAAGAAGGATGCTATTCAGAAGGCGGTGCGCGTTTCGGATCTTTTAGTGCATGCTGTGAATGGTGGAGTTCAGGAATCGTTTGTCAACCAGAAGCTGATTGAGCTCGAAATTAGGGCTTTAGCGGCCACGATTTCCCGATTTATGAAGCAGACTGATCAATGGCTCACCACTACTCACGCTCTGAATACTGCCATTAAGGTTTGCTCTCATTTCTATGAAGGCTAATTTTTAGTTTTTATCTCTTAGAAACCTACATTTTAGCTGTATACACAGCGCACAGACACATAAATTATGCATTGTTGCGAAGGGGAGGCTGCTCAATCTTATTAACGAACCATAGTTGGTTGGACTAGTAGTCAATATGAGCCGATGTAGATAGCAAAAGGCTTAGAGAAAATTAGTTTAAACTACAGTGGCCACATACATGAGATGAATATTACATATATCAATAGTAAAAAGCCCTTAAAAGGGGATAAGATCAAACCATGATGACCACGTATGTAAGATTTAATATCCTACGAATTACCTTGAAAACCAAATGTAGTTAGGTTAGACAGTCGTCTAATGAGAAGCAAACTATCCCAAACGTTTTAGAACTTTTAAAAGTCAATTAAATGATGTAGAGACAGAAATCGAGCTTAAAGGATTAGTTGATAATGCTTTTGATTCTACCTGGTACCCACATCTGCATCTAAGGATTTTCCTCTAATAGTGGTCTAAATGTTGCATACGGCTTGTGTACGGTAATAAGCAAAAGAGGAGACAGAGATGAGGAAAATACACCAGCACAGTGGCTGGGCACAGAGCACTACATTAAATAGGCAGAAGACATTACACGGGTCAACACAGTAGAGGATAGGAAATAACAGAAAAGAGTGCTTTCTTTTATTATTATTTTTATATCCGTGTGTTCGGGCCAGCTTGCGCGCACCTCAACTATTCACGGGCCAACCGCCTGACCCTACTAACAAGGAAACTCGTAGGATATTAAATGAAATAACAGGAAAGAGTGCTATGAGATAACCAAAGGAAAACACAAGATTAAGGAACTAACAAACACTTTAACAGCTTGCATACGGGCCATCTGTGTCATATGAAGAGCCTGTGAACTATTAGACATTGAGTTGTTATGCATTTTGTTAGCGTATTGTTAGAGCTGTTCTGAATTCTTAGTTTTGGTTAAAACATTTTCTGTTAGATTCATTACAGTGATCAGTTATTGAAAGTCAGTGGCTGAGCAGTATATATATTACCAGGGCCCTGTACTTTTGTATCAAGAAGAATATGAATATAAGTGCAGTTCGTGAAACTTAAGTTGGGCTATTTTGCAGCTATTTTTTGTTGGCCTGCTTCTTCTTGTTTTGTTGGATACATATAAAGAATCTTATCACAATATATTAGGCAATTTTAGTCTGCATATTATTATTTGACTTCAGACTTAGTATTGATGAAACAATAAGCAACTTCTTTGTATCTTGGATTCACATGAAGACTTGTTGAAGACTTGAAGTTGATGAAACCGGTTGAAAAGAATGGCATGAATATCACAGTCTTGAAAGTGCAAACTACAAAAGGCTGCCTGGCCTTTTTCTTTTATGTTTTCGTCATATCTTCCTTAGGTTTTCTTTCTGTCCTCTTTTCATTCTGATATGTCATGCATACTAATTTAATATGTGTTCATATTGTAGGAAATTGGAGATTTCGAGAACTGGATAAAGACCATCGATTTTGATTGTAAAAGCATCACTGCTGCCATCCATAACATTTACCAAGAC

mRNA sequence

ATGGATTCTCCGTCAGGGCCATCACGGCCGCACCTCCCCGTAGCGCGTAATCGCGGGATGCTTCAGTCGGAGACTGAGAGATTGAGCAGTGAGGCTGGAGGATTGGAAGCTTCCTTGCTTCAGATGGTCCACGATCACCAGTTCGCCTCTCTCAAGCTCCGGCAAGACTCCGAGAAGGCGAAGAAGGATGCTATTCAGAAGGCGGTGCGCGTTTCGGATCTTTTAGTGCATGCTGTGAATGGTGGAGTTCAGGAATCGTTTGTCAACCAGAAGCTGATTGAGCTCGAAATTAGGGCTTTAGCGGCCACGATTTCCCGATTTATGAAGCAGACTGATCAATGGCTCACCACTACTCACGCTCTGAATACTGCCATTAAGGAAATTGGAGATTTCGAGAACTGGATAAAGACCATCGATTTTGATTGTAAAAGCATCACTGCTGCCATCCATAACATTTACCAAGAC

Coding sequence (CDS)

ATGGATTCTCCGTCAGGGCCATCACGGCCGCACCTCCCCGTAGCGCGTAATCGCGGGATGCTTCAGTCGGAGACTGAGAGATTGAGCAGTGAGGCTGGAGGATTGGAAGCTTCCTTGCTTCAGATGGTCCACGATCACCAGTTCGCCTCTCTCAAGCTCCGGCAAGACTCCGAGAAGGCGAAGAAGGATGCTATTCAGAAGGCGGTGCGCGTTTCGGATCTTTTAGTGCATGCTGTGAATGGTGGAGTTCAGGAATCGTTTGTCAACCAGAAGCTGATTGAGCTCGAAATTAGGGCTTTAGCGGCCACGATTTCCCGATTTATGAAGCAGACTGATCAATGGCTCACCACTACTCACGCTCTGAATACTGCCATTAAGGAAATTGGAGATTTCGAGAACTGGATAAAGACCATCGATTTTGATTGTAAAAGCATCACTGCTGCCATCCATAACATTTACCAAGAC

Protein sequence

MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRALAATISRFMKQTDQWLTTTHALNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD

Homology

[Close]

BLAST of MS014170 vs. NCBI nr
Match: XP_022149781.1 (biogenesis of lysosome-related organelles complex 1 subunit 1 [Momordica charantia])

HSP 1 Score: 304.7 bits (779), Expect = 4.6e-79
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKA 60
           MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKA
Sbjct: 1   MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKA 60

Query: 61  KKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRALAATISRFMKQTDQWLTTTHA 120
           KKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRALAATISRFMKQTDQWLTTTHA
Sbjct: 61  KKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRALAATISRFMKQTDQWLTTTHA 120

Query: 121 LNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD 156
           LNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD
Sbjct: 121 LNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD 155

[Close]

BLAST of MS014170 vs. NCBI nr
Match: XP_022948128.1 (biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucurbita moschata] >KAG7023932.1 Biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 261.9 bits (668), Expect = 3.4e-66
Identity = 131/155 (84.52%), Postives = 141/155 (90.97%), Query Frame = 0


Query: 1   MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKA 60
           M+SPSG SR HLP  RNRG  QSE ERLS++ GGLEASL QMV+DHQ+ASLKLR++SEKA
Sbjct: 1   MNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRALAATISRFMKQTDQWLTTTHA 120
           KKDAIQKAVRVSDLLV AVNGGVQESFVNQKLIELEIRAL+ TI+RFMKQTDQWL  THA
Sbjct: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120

Query: 121 LNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD 156
           LNTA+KEIGDFENWIKTIDFDCKSIT AIHNIYQD
Sbjct: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 155

[Close]

BLAST of MS014170 vs. NCBI nr
Match: XP_023534753.1 (biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 259.6 bits (662), Expect = 1.7e-65
Identity = 130/155 (83.87%), Postives = 140/155 (90.32%), Query Frame = 0


Query: 1   MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKA 60
           M+SPSG SR HLP  RNRG  QSE ERLS++ GGLE SL QMV+DHQ+ASLKLR++SEKA
Sbjct: 1   MNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGGLEDSLFQMVNDHQYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRALAATISRFMKQTDQWLTTTHA 120
           KKDAIQKAVRVSDLLV AVNGGVQESFVNQKLIELEIRAL+ TI+RFMKQTDQWL  THA
Sbjct: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120

Query: 121 LNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD 156
           LNTA+KEIGDFENWIKTIDFDCKSIT AIHNIYQD
Sbjct: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 155

[Close]

BLAST of MS014170 vs. NCBI nr
Match: XP_023007259.1 (biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucurbita maxima])

HSP 1 Score: 257.3 bits (656), Expect = 8.5e-65
Identity = 129/155 (83.23%), Postives = 140/155 (90.32%), Query Frame = 0


Query: 1   MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKA 60
           M+SPSG SR H P ARNRG  QSE ERLS++ GGLEASL QMV+DHQ+ASLKLR++SEKA
Sbjct: 1   MNSPSGQSRQHHPAARNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRALAATISRFMKQTDQWLTTTHA 120
           KKDAIQKA+RVSDLLV AVNGGVQ SFVNQKLIELEIRAL+ TI+RFMKQTDQWL  THA
Sbjct: 61  KKDAIQKALRVSDLLVDAVNGGVQGSFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120

Query: 121 LNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD 156
           LNTA+KEIGDFENWIKTIDFDCKSIT AIHNIYQD
Sbjct: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 155

[Close]

BLAST of MS014170 vs. NCBI nr
Match: XP_038900751.1 (biogenesis of lysosome-related organelles complex 1 subunit 1 [Benincasa hispida])

HSP 1 Score: 256.9 bits (655), Expect = 1.1e-64
Identity = 130/155 (83.87%), Postives = 140/155 (90.32%), Query Frame = 0


Query: 1   MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKA 60
           M+S SGPSRP LPVA NRG  QSETE L++E GGLEASLLQMV+DH +ASLKLR++SEKA
Sbjct: 1   MNSSSGPSRPDLPVAPNRGKFQSETEGLTAEVGGLEASLLQMVNDHHYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRALAATISRFMKQTDQWLTTTHA 120
           KKDAIQKAVRVSDLL  AVNGGVQ+SFVNQKLIELEIRALA TI+RF KQTDQWL  THA
Sbjct: 61  KKDAIQKAVRVSDLLFDAVNGGVQDSFVNQKLIELEIRALATTIARFTKQTDQWLAATHA 120

Query: 121 LNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD 156
           LNTA+KEIGDFENWIKTIDFDCKSIT AIHNIYQD
Sbjct: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 155

[Close]

BLAST of MS014170 vs. ExPASy Swiss-Prot
Match: O22929 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Arabidopsis thaliana OX=3702 GN=BLOS1 PE=1 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.3e-41
Identity = 83/144 (57.64%), Postives = 114/144 (79.17%), Query Frame = 0


Query: 12  LPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRV 71
           L  AR R +   E E+   E+  LE+SLLQ++ D++ +SL+LR+ +E+++K+AI+ A R 
Sbjct: 7   LSAARGRMLPFLEKEKSEEESETLESSLLQLIDDNRRSSLQLREKTERSRKEAIRHAART 66

Query: 72  SDLLVHAVNGGVQESFVNQKLIELEIRALAATISRFMKQTDQWLTTTHALNTAIKEIGDF 131
           +DLLV AVNGGV+E FVN+K IE EIR LA T+++F KQTDQWL  THA+N+A+KEIGDF
Sbjct: 67  ADLLVKAVNGGVEECFVNEKRIESEIRNLAITVAKFGKQTDQWLAVTHAVNSAVKEIGDF 126

Query: 132 ENWIKTIDFDCKSITAAIHNIYQD 156
           ENW+KT++FDCK ITAAI NI++D
Sbjct: 127 ENWMKTMEFDCKKITAAIRNIHED 150

[Close]

BLAST of MS014170 vs. ExPASy Swiss-Prot
Match: Q0VFD8 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Xenopus tropicalis OX=8364 GN=bloc1s1 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.8e-17
Identity = 41/116 (35.34%), Postives = 73/116 (62.93%), Query Frame = 0


Query: 39  LLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIR 98
           L +++ +HQ    + ++  EK +KDAI  A  +++ LV  +N GV +++VNQ+ ++ E++
Sbjct: 2   LSRLLKEHQGKQTERKEAQEKRRKDAIAAATTLTEALVDHLNVGVAQAYVNQRKLDHEVK 61

Query: 99  ALAATISRFMKQTDQWLTTTHALNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQ 155
            L    ++F KQT QW++     N A+KEIGD ENW ++I+ D + I  A+  +Y+
Sbjct: 62  TLQTQAAQFAKQTTQWISLVENFNQALKEIGDVENWARSIEKDMRIIATALEYVYK 117

[Close]

BLAST of MS014170 vs. ExPASy Swiss-Prot
Match: Q54VX7 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Dictyostelium discoideum OX=44689 GN=bloc1s1 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.3e-17
Identity = 48/115 (41.74%), Postives = 70/115 (60.87%), Query Frame = 0


Query: 39  LLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIR 98
           L ++V DHQ    KL++++E  KK+AI     V++ L+ +VN GV   F NQK +E E R
Sbjct: 2   LSKLVKDHQTHQNKLKEENEVLKKEAIASMGVVTNGLIDSVNTGVACIFANQKKLETEAR 61

Query: 99  ALAATISRFMKQTDQWLTTTHALNTAIKEIGDFENWIKTIDFDCKSITAAIHNIY 154
            L A  ++F KQT+QW+      N ++KEIGD ENW K I+ D  +I+  I  +Y
Sbjct: 62  LLQANTAKFSKQTNQWIHLIENFNNSLKEIGDVENWSKKIESDMHNISDIIEFLY 116

[Close]

BLAST of MS014170 vs. ExPASy Swiss-Prot
Match: Q2NKW0 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Bos taurus OX=9913 GN=BLOC1S1 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.4e-16
Identity = 38/116 (32.76%), Postives = 73/116 (62.93%), Query Frame = 0


Query: 39  LLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIR 98
           L +++ +HQ    + ++  EK +++AI  A  +++ LV  +N GV ++++NQ+ ++ E++
Sbjct: 2   LSRLLKEHQAKQNERKELQEKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEVK 61

Query: 99  ALAATISRFMKQTDQWLTTTHALNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQ 155
            L    ++F KQT QW+      N A+KEIGD ENW ++I+ D ++I  A+  +Y+
Sbjct: 62  TLQVQAAQFAKQTGQWIGMVENFNQALKEIGDVENWARSIELDMRTIATALEYVYK 117

[Close]

BLAST of MS014170 vs. ExPASy Swiss-Prot
Match: P78537 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Homo sapiens OX=9606 GN=BLOC1S1 PE=1 SV=2)

HSP 1 Score: 85.9 bits (211), Expect = 4.4e-16
Identity = 38/116 (32.76%), Postives = 73/116 (62.93%), Query Frame = 0


Query: 39  LLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIR 98
           L +++ +HQ    + ++  EK +++AI  A  +++ LV  +N GV ++++NQ+ ++ E++
Sbjct: 30  LSRLLKEHQAKQNERKELQEKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEVK 89

Query: 99  ALAATISRFMKQTDQWLTTTHALNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQ 155
            L    ++F KQT QW+      N A+KEIGD ENW ++I+ D ++I  A+  +Y+
Sbjct: 90  TLQVQAAQFAKQTGQWIGMVENFNQALKEIGDVENWARSIELDMRTIATALEYVYK 145

[Close]

BLAST of MS014170 vs. ExPASy TrEMBL
Match: A0A6J1D9F5 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Momordica charantia OX=3673 GN=LOC111018127 PE=3 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 2.2e-79
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKA 60
           MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKA
Sbjct: 1   MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKA 60

Query: 61  KKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRALAATISRFMKQTDQWLTTTHA 120
           KKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRALAATISRFMKQTDQWLTTTHA
Sbjct: 61  KKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRALAATISRFMKQTDQWLTTTHA 120

Query: 121 LNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD 156
           LNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD
Sbjct: 121 LNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD 155

[Close]

BLAST of MS014170 vs. ExPASy TrEMBL
Match: A0A6J1G8I4 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Cucurbita moschata OX=3662 GN=LOC111451801 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.7e-66
Identity = 131/155 (84.52%), Postives = 141/155 (90.97%), Query Frame = 0


Query: 1   MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKA 60
           M+SPSG SR HLP  RNRG  QSE ERLS++ GGLEASL QMV+DHQ+ASLKLR++SEKA
Sbjct: 1   MNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRALAATISRFMKQTDQWLTTTHA 120
           KKDAIQKAVRVSDLLV AVNGGVQESFVNQKLIELEIRAL+ TI+RFMKQTDQWL  THA
Sbjct: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120

Query: 121 LNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD 156
           LNTA+KEIGDFENWIKTIDFDCKSIT AIHNIYQD
Sbjct: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 155

[Close]

BLAST of MS014170 vs. ExPASy TrEMBL
Match: A0A6J1L4G4 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Cucurbita maxima OX=3661 GN=LOC111499798 PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 4.1e-65
Identity = 129/155 (83.23%), Postives = 140/155 (90.32%), Query Frame = 0


Query: 1   MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKA 60
           M+SPSG SR H P ARNRG  QSE ERLS++ GGLEASL QMV+DHQ+ASLKLR++SEKA
Sbjct: 1   MNSPSGQSRQHHPAARNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRALAATISRFMKQTDQWLTTTHA 120
           KKDAIQKA+RVSDLLV AVNGGVQ SFVNQKLIELEIRAL+ TI+RFMKQTDQWL  THA
Sbjct: 61  KKDAIQKALRVSDLLVDAVNGGVQGSFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120

Query: 121 LNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD 156
           LNTA+KEIGDFENWIKTIDFDCKSIT AIHNIYQD
Sbjct: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 155

[Close]

BLAST of MS014170 vs. ExPASy TrEMBL
Match: A0A1S3CKJ9 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Cucumis melo OX=3656 GN=LOC103501869 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.2e-63
Identity = 128/155 (82.58%), Postives = 136/155 (87.74%), Query Frame = 0


Query: 1   MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKA 60
           M S  G SRP LPV  NRG  QS+TERLS++ GGLE SLLQMV DHQ+ASLKLR++SEKA
Sbjct: 1   MKSSLGQSRPDLPVPPNRGKFQSDTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRALAATISRFMKQTDQWLTTTHA 120
           KKDAIQKAVRVSDLLV  VNGGVQESFVNQKLIELEIRALA TI+RF KQTDQWL  THA
Sbjct: 61  KKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHA 120

Query: 121 LNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD 156
           LNTA+KEIGDFENWIKTIDFDCKSIT AIHNIYQD
Sbjct: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 155

[Close]

BLAST of MS014170 vs. ExPASy TrEMBL
Match: A0A6A6L8U3 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Hevea brasiliensis OX=3981 GN=GH714_011008 PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.3e-52
Identity = 108/145 (74.48%), Postives = 125/145 (86.21%), Query Frame = 0


Query: 10  PHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKAKKDAIQKAV 69
           P LP+AR R     ETE+   E GGLEASLLQ++HDH   SL+LR+ +EKAKKDAI+KAV
Sbjct: 4   PQLPLARTRVASPWETEKPQPEPGGLEASLLQLMHDHHHKSLRLRELTEKAKKDAIKKAV 63

Query: 70  RVSDLLVHAVNGGVQESFVNQKLIELEIRALAATISRFMKQTDQWLTTTHALNTAIKEIG 129
           RVSDLL+ AVNGGVQESF+N+K IELEIRALAATISRFM+QTDQWLT THA+NTAIKEIG
Sbjct: 64  RVSDLLMDAVNGGVQESFINEKRIELEIRALAATISRFMRQTDQWLTATHAINTAIKEIG 123

Query: 130 DFENWIKTIDFDCKSITAAIHNIYQ 155
           DFENW+KT++FDCKSI AAI NI+Q
Sbjct: 124 DFENWMKTMEFDCKSINAAIRNIHQ 148

[Close]

BLAST of MS014170 vs. TAIR 10
Match: AT2G30330.1 (GCN5L1 family protein )

HSP 1 Score: 169.9 bits (429), Expect = 1.7e-42
Identity = 83/144 (57.64%), Postives = 114/144 (79.17%), Query Frame = 0


Query: 12  LPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRV 71
           L  AR R +   E E+   E+  LE+SLLQ++ D++ +SL+LR+ +E+++K+AI+ A R 
Sbjct: 7   LSAARGRMLPFLEKEKSEEESETLESSLLQLIDDNRRSSLQLREKTERSRKEAIRHAART 66

Query: 72  SDLLVHAVNGGVQESFVNQKLIELEIRALAATISRFMKQTDQWLTTTHALNTAIKEIGDF 131
           +DLLV AVNGGV+E FVN+K IE EIR LA T+++F KQTDQWL  THA+N+A+KEIGDF
Sbjct: 67  ADLLVKAVNGGVEECFVNEKRIESEIRNLAITVAKFGKQTDQWLAVTHAVNSAVKEIGDF 126

Query: 132 ENWIKTIDFDCKSITAAIHNIYQD 156
           ENW+KT++FDCK ITAAI NI++D
Sbjct: 127 ENWMKTMEFDCKKITAAIRNIHED 150

The following BLAST results are available for this feature:

BLAST of MS014170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022149781.1	4.6e-79	100.00	biogenesis of lysosome-related organelles complex 1 subunit 1 [Momordica charant...	[more]
XP_022948128.1	3.4e-66	84.52	biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucurbita moschat...	[more]
XP_023534753.1	1.7e-65	83.87	biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucurbita pepo su...	[more]
XP_023007259.1	8.5e-65	83.23	biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucurbita maxima]	[more]
XP_038900751.1	1.1e-64	83.87	biogenesis of lysosome-related organelles complex 1 subunit 1 [Benincasa hispida...	[more]

BLAST of MS014170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22929	2.3e-41	57.64	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Arabidopsis tha...	[more]
Q0VFD8	1.8e-17	35.34	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Xenopus tropica...	[more]
Q54VX7	2.3e-17	41.74	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Dictyostelium d...	[more]
Q2NKW0	4.4e-16	32.76	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Bos taurus OX=9...	[more]
P78537	4.4e-16	32.76	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Homo sapiens OX...	[more]

BLAST of MS014170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D9F5	2.2e-79	100.00	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Momordica chara...	[more]
A0A6J1G8I4	1.7e-66	84.52	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Cucurbita mosch...	[more]
A0A6J1L4G4	4.1e-65	83.23	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Cucurbita maxim...	[more]
A0A1S3CKJ9	2.2e-63	82.58	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Cucumis melo OX...	[more]
A0A6A6L8U3	2.3e-52	74.48	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Hevea brasilien...	[more]

BLAST of MS014170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30330.1	1.7e-42	57.64	GCN5L1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009395	Biogenesis of lysosome-related organelles complex 1 subunit 1	PFAM	PF06320	GCN5L1	coord: 42..154 e-value: 4.8E-40 score: 136.3
IPR009395	Biogenesis of lysosome-related organelles complex 1 subunit 1	PANTHER	PTHR13073	BLOC-1 COMPLEX SUBUNIT 1	coord: 13..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS014170.1	MS014170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0031083	BLOC-1 complex