MS014115 (gene) Bitter gourd (TR) v1

Overview


Name	MS014115
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	LOB domain-containing protein
Location	scaffold5: 690426 .. 692055 (+)
RNA-Seq Expression	MS014115
Synteny	MS014115

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGAGAGTAGTGGAAGAAAACAAGGCACTCTCTCCCCATGCGCAGCCTGCAAACTCCTCCGGCGCCGCTGCGCTCACGACTGTGTTTTCGCCCCTTATTTTCCCGCCGACGAGCCCCACAAGTTCGCCAGCGTCCACAAGGTCTTCGGAGCCAGCAACGTCAACAAAATGTTACAGGTTCGATTGTAAAACTGTCAGTCACATTGCTCGTATTTTTTTCCGTTTTAGAGTAATGCTGTATGTTAGATAAATTAGACGTTTGGTTCGGGGGGAGGGCAAACTTCTGTTTGAATTGTCTTTGATAGTATGAACAATTGAAAAATACCGACAACAAACACTCACAAATCGACAAAACCGCTCCCACGGACAAAAGAACATACTAGGTAGGCTAATTTCTTCACGTTACATAGAAAATTAAACAGCAGAAAAAAACAGGAAAAAGAAAAAAAAGACTTGGGGAATCGACATGACGTTTGGCTTTTGCTTTCAATGGTGTTCCATCTTTTTCTCTCCTATCTTTTTTTTTTTTTCCAAGTTGGATTATAACTTATAAGCCACGACAAGATTATTAAACGTCCCTTTCTCTTTTCTTTTACGTTAGTAAAAAATTAAAACCATATTTATTTTCTCAACTTTTCTAAATAATTTATCTAAAAAGTAATATTTATAAAGATAAAATTACAGTGTGAACAAATGAAACACTACGAATTTTTAGAATTTGTTTTATTTTCAGTTATAGTGGTTAATTACAGTTGAGGAGCCCACCCTTTGTGGAAAAAAGAGAAGAGCCCAAGTCTACCAAATTTTCTACTTTTTCAAAAAGCAGAGCCAAAAATCAGTTGGACGACCACCCCAGGAGATTCCTTGGCGTATGAAAGAGTAAAGGGATCATTTTATTAATTTGTACTATATAATAAATCAAAACTCTCCCTTTAATTAATTACCACATCACACATTAAAAGCAAATATAATGTTTTAATTATAATTAATTAATTTTATCATCTCCACTTTATGCTCCATTAAGCTTAAAGCTTTTGGAGAAATTACAATACAAACCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTTTTTTGGTCGTGTAATAGCTCCAAAAGAAAGGGTAAGATTATTGTAAATGTTTTTTTTTATTACCATAAGGCAATATTATTTATGTAACTTTGACGTCATAATGACATCTACCTTAAAATTATAGAATTGGTATTTTTTTTCATACTTTTAATGTTACTAGTGTCACTAGAGTTGACGAATATATATGTCAATGAGTAGGAATTGCCAGAACACCAACGGAGCGATGCGGTGAGCTCGATGGTGTACGAAGCGAATGCAAGGGTGCGAGATCCAGTGTATGGGTGTGTCGGAGCCATATCGTCGCTGCAGCAACAGATCGATCTCTTGCAAACGCAGCTGGCAATCGCGCAGGCGGAGGTGGTTCACATGCGGATGCGCCAATTCCCATCTACCTCCACTCCGAGCGCCGCCCACTCACCGGAAACTGCCGGGAAGCTGAACATTCCGGCGCAAAACAAGTCCTTTTTTACCATGGACATGGTTGGCCACGACAACATGGGGGAGTCCTTATGGTCGTCGTGT

mRNA sequence

ATGAAGGAGAGTAGTGGAAGAAAACAAGGCACTCTCTCCCCATGCGCAGCCTGCAAACTCCTCCGGCGCCGCTGCGCTCACGACTGTGTTTTCGCCCCTTATTTTCCCGCCGACGAGCCCCACAAGTTCGCCAGCGTCCACAAGGTCTTCGGAGCCAGCAACGTCAACAAAATGTTACAGGAATTGCCAGAACACCAACGGAGCGATGCGGTGAGCTCGATGGTGTACGAAGCGAATGCAAGGGTGCGAGATCCAGTGTATGGGTGTGTCGGAGCCATATCGTCGCTGCAGCAACAGATCGATCTCTTGCAAACGCAGCTGGCAATCGCGCAGGCGGAGGTGGTTCACATGCGGATGCGCCAATTCCCATCTACCTCCACTCCGAGCGCCGCCCACTCACCGGAAACTGCCGGGAAGCTGAACATTCCGGCGCAAAACAAGTCCTTTTTTACCATGGACATGGTTGGCCACGACAACATGGGGGAGTCCTTATGGTCGTCGTGT

Coding sequence (CDS)

ATGAAGGAGAGTAGTGGAAGAAAACAAGGCACTCTCTCCCCATGCGCAGCCTGCAAACTCCTCCGGCGCCGCTGCGCTCACGACTGTGTTTTCGCCCCTTATTTTCCCGCCGACGAGCCCCACAAGTTCGCCAGCGTCCACAAGGTCTTCGGAGCCAGCAACGTCAACAAAATGTTACAGGAATTGCCAGAACACCAACGGAGCGATGCGGTGAGCTCGATGGTGTACGAAGCGAATGCAAGGGTGCGAGATCCAGTGTATGGGTGTGTCGGAGCCATATCGTCGCTGCAGCAACAGATCGATCTCTTGCAAACGCAGCTGGCAATCGCGCAGGCGGAGGTGGTTCACATGCGGATGCGCCAATTCCCATCTACCTCCACTCCGAGCGCCGCCCACTCACCGGAAACTGCCGGGAAGCTGAACATTCCGGCGCAAAACAAGTCCTTTTTTACCATGGACATGGTTGGCCACGACAACATGGGGGAGTCCTTATGGTCGTCGTGT

Protein sequence

MKESSGRKQGTLSPCAACKLLRRRCAHDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQFPSTSTPSAAHSPETAGKLNIPAQNKSFFTMDMVGHDNMGESLWSSC

Homology

[Close]

BLAST of MS014115 vs. NCBI nr
Match: XP_022149611.1 (LOB domain-containing protein 4 [Momordica charantia])

HSP 1 Score: 339.7 bits (870), Expect = 1.4e-89
Identity = 167/168 (99.40%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MKESSGRKQGTLSPCAACKLLRRRCAHDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQ 60
           MKESSGRKQGTLSPCAACKLLRRRCAHDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQ
Sbjct: 1   MKESSGRKQGTLSPCAACKLLRRRCAHDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQ 60

Query: 61  ELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMR 120
           ELPEHQRSDAVSSMVYEANAR+RDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMR
Sbjct: 61  ELPEHQRSDAVSSMVYEANARMRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMR 120

Query: 121 QFPSTSTPSAAHSPETAGKLNIPAQNKSFFTMDMVGHDNMGESLWSSC 169
           QFPSTSTPSAAHSPETAGKLNIPAQNKSFFTMDMVGHDNMGESLWSSC
Sbjct: 121 QFPSTSTPSAAHSPETAGKLNIPAQNKSFFTMDMVGHDNMGESLWSSC 168

[Close]

BLAST of MS014115 vs. NCBI nr
Match: XP_004150042.1 (LOB domain-containing protein 4 [Cucumis sativus] >KGN46813.1 hypothetical protein Csa_020952 [Cucumis sativus])

HSP 1 Score: 295.8 bits (756), Expect = 2.3e-76
Identity = 152/173 (87.86%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 1   MKESSGRKQGT-LSPCAACKLLRRRCAHDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE SGRKQGT LSPCAACKLLRRRCA DCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPE QRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM
Sbjct: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120

Query: 121 RQFPSTS-TPSAAHSPETA---GKLNIPAQNKSFFTMDMVGHDNMGESLWSSC 169
           R FPS+S  P+A HSPETA    K+NIPA NKS+F+MDMV HD+MGE+LWSSC
Sbjct: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC 173

[Close]

BLAST of MS014115 vs. NCBI nr
Match: XP_038902133.1 (LOB domain-containing protein 4-like [Benincasa hispida])

HSP 1 Score: 295.0 bits (754), Expect = 4.0e-76
Identity = 152/173 (87.86%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 1   MKESSGRKQGT-LSPCAACKLLRRRCAHDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE +GRKQGT LSPCAACKLLRRRCA DCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKEINGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPE QRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQID+LQTQLAIAQAEVVHMRM
Sbjct: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAIAQAEVVHMRM 120

Query: 121 RQFPSTS-TPSAAHSPETA---GKLNIPAQNKSFFTMDMVGHDNMGESLWSSC 169
           RQFPS+S   +  HSPETA   GK+NIPA NKS+F+MDMV HDNMGESLWSSC
Sbjct: 121 RQFPSSSCNLTIGHSPETASPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC 173

[Close]

BLAST of MS014115 vs. NCBI nr
Match: KAA0054642.1 (LOB domain-containing protein 4-like [Cucumis melo var. makuwa] >TYK08620.1 LOB domain-containing protein 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 287.0 bits (733), Expect = 1.1e-73
Identity = 148/173 (85.55%), Postives = 155/173 (89.60%), Query Frame = 0


Query: 1   MKESSGRKQGT-LSPCAACKLLRRRCAHDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE SGRKQGT LSPCAACKLLRRRCA DCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPE QRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM
Sbjct: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120

Query: 121 RQFPSTS-TPSAAHSPETA---GKLNIPAQNKSFFTMDMVGHDNMGESLWSSC 169
           R  PS+S  P+  HS ETA    K+NIP  NKS+F+MDMV HD+MGE+LWSSC
Sbjct: 121 RHIPSSSYNPTMGHSSETASPSSKMNIPVPNKSYFSMDMVDHDSMGETLWSSC 173

[Close]

BLAST of MS014115 vs. NCBI nr
Match: XP_022947417.1 (LOB domain-containing protein 4-like [Cucurbita moschata] >XP_022970811.1 LOB domain-containing protein 4-like [Cucurbita maxima] >KAG6604717.1 LOB domain-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034846.1 LOB domain-containing protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 284.6 bits (727), Expect = 5.4e-73
Identity = 148/172 (86.05%), Postives = 157/172 (91.28%), Query Frame = 0


Query: 1   MKESSGRKQGTLSPCAACKLLRRRCAHDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQ 60
           MKE SGRKQG ++PCAACKLLRRRCA DCVFAPYFPADEPHKFASVHKVFGASNVNKMLQ
Sbjct: 1   MKE-SGRKQGAVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQ 60

Query: 61  ELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMR 120
           ELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQT+LAIAQAEVVHMRMR
Sbjct: 61  ELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRMR 120

Query: 121 QFPSTST-PSAAHSPETA---GKLNIPAQNKSFFTMDMVGHDNMGESLWSSC 169
           QF S+S+ P+A HSPETA   GK+NIP QNKS+F+M     DNMGESLWSSC
Sbjct: 121 QFTSSSSNPTAGHSPETASPSGKINIPPQNKSYFSM-----DNMGESLWSSC 166

[Close]

BLAST of MS014115 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 7.1e-60
Identity = 125/174 (71.84%), Postives = 141/174 (81.03%), Query Frame = 0


Query: 1   MKESSGRKQGTLSPCAACKLLRRRCAHDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQ 60
           MKESS RKQG  SPCAACKLLRRRCA DCVF+PYFPADEP KFA+VH+VFGASNVNKMLQ
Sbjct: 1   MKESS-RKQGAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQ 60

Query: 61  ELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMR 120
           ELP HQR DAVSSMVYEANARVRDPVYGCVGAISSLQQQID+LQ QLA+AQAEVVH+R+R
Sbjct: 61  ELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVR 120

Query: 121 Q---FPS----TSTPSAAHSPETAGKLNIPAQNKSFFT-MDMVGHDNMGESLWS 167
           Q   FP       +PS++ SP  + K   P  NK  F+ MD+V   ++GES+WS
Sbjct: 121 QSTNFPGHGLCPDSPSSSGSP--SSKQVSPQDNKGMFSHMDIVDEASLGESMWS 171

[Close]

BLAST of MS014115 vs. ExPASy Swiss-Prot
Match: Q9SA51 (LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.2e-46
Identity = 100/170 (58.82%), Postives = 122/170 (71.76%), Query Frame = 0


Query: 1   MKESSGRKQGTLSPCAACKLLRRRCAHD-CVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           M++   R   T+SPCA CKLLRR+C  D CVFAPYFPA EP+KFA VHK+FGASNVNKML
Sbjct: 1   MRQKGHRHGRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKML 60

Query: 61  QELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QEL E+ RSDAV SMVYEANAR++DPVYGCVG ISSL +Q++ LQTQLA AQAE++H+R 
Sbjct: 61  QELSENHRSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRT 120

Query: 121 RQFPSTSTPSAAHSPETAGKLNIPAQNKSFFT---MDMVGHDNMGESLWS 167
                T  P     P TA  +  P+ NK F++   M +   D+ G+ LWS
Sbjct: 121 LHRIHTKPP-----PYTASTVTFPS-NKDFYSDIDMAVAYTDDAGDFLWS 164

[Close]

BLAST of MS014115 vs. ExPASy Swiss-Prot
Match: Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 179.1 bits (453), Expect = 4.2e-44
Identity = 84/112 (75.00%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 13  SPCAACKLLRRRCAHDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRSDAVS 72
           SPCA+CKLLRRRCA DC+FAPYFP D+PHKFA VHKVFGASNV+KMLQELP HQR+DAV+
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 73  SMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQFPS 125
           S+V+EANARVRDPVYGCVGAIS LQ Q+  LQ QLA+AQAE++ ++M+  P+
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPT 118

[Close]

BLAST of MS014115 vs. ExPASy Swiss-Prot
Match: Q8L5T5 (LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 SV=2)

HSP 1 Score: 162.2 bits (409), Expect = 5.3e-39
Identity = 79/141 (56.03%), Postives = 102/141 (72.34%), Query Frame = 0


Query: 11  TLSPCAACKLLRRRCAHDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRSDA 70
           T++PCAACKLLRRRCA +C F+PYF   EPHKFASVHKVFGASNV+KML E+PE QR+DA
Sbjct: 42  TITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADA 101

Query: 71  VSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQ------FPS 130
            +S+VYEAN R+RDPVYGC+GAIS+LQQQ+  LQ +L   ++E++  + R+       PS
Sbjct: 102 ANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREAVATLIVPS 161

Query: 131 TSTPSAAHSPETAGKLNIPAQ 146
            S  +  H+      +  P Q
Sbjct: 162 NSQVAGFHNSGGVSVIAPPPQ 182

[Close]

BLAST of MS014115 vs. ExPASy Swiss-Prot
Match: Q9LQR0 (LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.1e-36
Identity = 74/110 (67.27%), Postives = 88/110 (80.00%), Query Frame = 0


Query: 12  LSPCAACKLLRRRCAHDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRSDAV 71
           LSPCAACK+LRRRCA  CV APYFP  +P KF   H+VFGASN+ K LQELPE QR+DAV
Sbjct: 31  LSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAV 90

Query: 72  SSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQ 122
           +SMVYEA AR+RDPVYGC GAI  LQ+Q+  LQ QLA AQ E+V+M+ ++
Sbjct: 91  NSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQR 140

[Close]

BLAST of MS014115 vs. ExPASy TrEMBL
Match: A0A6J1D8X3 (LOB domain-containing protein 4 OS=Momordica charantia OX=3673 GN=LOC111017996 PE=3 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 6.8e-90
Identity = 167/168 (99.40%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MKESSGRKQGTLSPCAACKLLRRRCAHDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQ 60
           MKESSGRKQGTLSPCAACKLLRRRCAHDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQ
Sbjct: 1   MKESSGRKQGTLSPCAACKLLRRRCAHDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQ 60

Query: 61  ELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMR 120
           ELPEHQRSDAVSSMVYEANAR+RDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMR
Sbjct: 61  ELPEHQRSDAVSSMVYEANARMRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMR 120

Query: 121 QFPSTSTPSAAHSPETAGKLNIPAQNKSFFTMDMVGHDNMGESLWSSC 169
           QFPSTSTPSAAHSPETAGKLNIPAQNKSFFTMDMVGHDNMGESLWSSC
Sbjct: 121 QFPSTSTPSAAHSPETAGKLNIPAQNKSFFTMDMVGHDNMGESLWSSC 168

[Close]

BLAST of MS014115 vs. ExPASy TrEMBL
Match: A0A0A0KBA8 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G139130 PE=3 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.1e-76
Identity = 152/173 (87.86%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 1   MKESSGRKQGT-LSPCAACKLLRRRCAHDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE SGRKQGT LSPCAACKLLRRRCA DCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPE QRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM
Sbjct: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120

Query: 121 RQFPSTS-TPSAAHSPETA---GKLNIPAQNKSFFTMDMVGHDNMGESLWSSC 169
           R FPS+S  P+A HSPETA    K+NIPA NKS+F+MDMV HD+MGE+LWSSC
Sbjct: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC 173

[Close]

BLAST of MS014115 vs. ExPASy TrEMBL
Match: A0A5D3CBA3 (LOB domain-containing protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3734G00510 PE=3 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 5.2e-74
Identity = 148/173 (85.55%), Postives = 155/173 (89.60%), Query Frame = 0


Query: 1   MKESSGRKQGT-LSPCAACKLLRRRCAHDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE SGRKQGT LSPCAACKLLRRRCA DCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPE QRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM
Sbjct: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120

Query: 121 RQFPSTS-TPSAAHSPETA---GKLNIPAQNKSFFTMDMVGHDNMGESLWSSC 169
           R  PS+S  P+  HS ETA    K+NIP  NKS+F+MDMV HD+MGE+LWSSC
Sbjct: 121 RHIPSSSYNPTMGHSSETASPSSKMNIPVPNKSYFSMDMVDHDSMGETLWSSC 173

[Close]

BLAST of MS014115 vs. ExPASy TrEMBL
Match: A0A6J1I1K8 (LOB domain-containing protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111469678 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.6e-73
Identity = 148/172 (86.05%), Postives = 157/172 (91.28%), Query Frame = 0


Query: 1   MKESSGRKQGTLSPCAACKLLRRRCAHDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQ 60
           MKE SGRKQG ++PCAACKLLRRRCA DCVFAPYFPADEPHKFASVHKVFGASNVNKMLQ
Sbjct: 1   MKE-SGRKQGAVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQ 60

Query: 61  ELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMR 120
           ELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQT+LAIAQAEVVHMRMR
Sbjct: 61  ELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRMR 120

Query: 121 QFPSTST-PSAAHSPETA---GKLNIPAQNKSFFTMDMVGHDNMGESLWSSC 169
           QF S+S+ P+A HSPETA   GK+NIP QNKS+F+M     DNMGESLWSSC
Sbjct: 121 QFTSSSSNPTAGHSPETASPSGKINIPPQNKSYFSM-----DNMGESLWSSC 166

[Close]

BLAST of MS014115 vs. ExPASy TrEMBL
Match: A0A6J1G6E3 (LOB domain-containing protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111451283 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.6e-73
Identity = 148/172 (86.05%), Postives = 157/172 (91.28%), Query Frame = 0


Query: 1   MKESSGRKQGTLSPCAACKLLRRRCAHDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQ 60
           MKE SGRKQG ++PCAACKLLRRRCA DCVFAPYFPADEPHKFASVHKVFGASNVNKMLQ
Sbjct: 1   MKE-SGRKQGAVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQ 60

Query: 61  ELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMR 120
           ELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQT+LAIAQAEVVHMRMR
Sbjct: 61  ELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRMR 120

Query: 121 QFPSTST-PSAAHSPETA---GKLNIPAQNKSFFTMDMVGHDNMGESLWSSC 169
           QF S+S+ P+A HSPETA   GK+NIP QNKS+F+M     DNMGESLWSSC
Sbjct: 121 QFTSSSSNPTAGHSPETASPSGKINIPPQNKSYFSM-----DNMGESLWSSC 166

[Close]

BLAST of MS014115 vs. TAIR 10
Match: AT1G31320.1 (LOB domain-containing protein 4 )

HSP 1 Score: 231.5 bits (589), Expect = 5.0e-61
Identity = 125/174 (71.84%), Postives = 141/174 (81.03%), Query Frame = 0


Query: 1   MKESSGRKQGTLSPCAACKLLRRRCAHDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQ 60
           MKESS RKQG  SPCAACKLLRRRCA DCVF+PYFPADEP KFA+VH+VFGASNVNKMLQ
Sbjct: 1   MKESS-RKQGAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQ 60

Query: 61  ELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMR 120
           ELP HQR DAVSSMVYEANARVRDPVYGCVGAISSLQQQID+LQ QLA+AQAEVVH+R+R
Sbjct: 61  ELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVR 120

Query: 121 Q---FPS----TSTPSAAHSPETAGKLNIPAQNKSFFT-MDMVGHDNMGESLWS 167
           Q   FP       +PS++ SP  + K   P  NK  F+ MD+V   ++GES+WS
Sbjct: 121 QSTNFPGHGLCPDSPSSSGSP--SSKQVSPQDNKGMFSHMDIVDEASLGESMWS 171

[Close]

BLAST of MS014115 vs. TAIR 10
Match: AT1G16530.1 (ASYMMETRIC LEAVES 2-like 9 )

HSP 1 Score: 187.6 bits (475), Expect = 8.3e-48
Identity = 100/170 (58.82%), Postives = 122/170 (71.76%), Query Frame = 0


Query: 1   MKESSGRKQGTLSPCAACKLLRRRCAHD-CVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           M++   R   T+SPCA CKLLRR+C  D CVFAPYFPA EP+KFA VHK+FGASNVNKML
Sbjct: 1   MRQKGHRHGRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKML 60

Query: 61  QELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QEL E+ RSDAV SMVYEANAR++DPVYGCVG ISSL +Q++ LQTQLA AQAE++H+R 
Sbjct: 61  QELSENHRSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRT 120

Query: 121 RQFPSTSTPSAAHSPETAGKLNIPAQNKSFFT---MDMVGHDNMGESLWS 167
                T  P     P TA  +  P+ NK F++   M +   D+ G+ LWS
Sbjct: 121 LHRIHTKPP-----PYTASTVTFPS-NKDFYSDIDMAVAYTDDAGDFLWS 164

[Close]

BLAST of MS014115 vs. TAIR 10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 179.1 bits (453), Expect = 3.0e-45
Identity = 84/112 (75.00%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 13  SPCAACKLLRRRCAHDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRSDAVS 72
           SPCA+CKLLRRRCA DC+FAPYFP D+PHKFA VHKVFGASNV+KMLQELP HQR+DAV+
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 73  SMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQFPS 125
           S+V+EANARVRDPVYGCVGAIS LQ Q+  LQ QLA+AQAE++ ++M+  P+
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPT 118

[Close]

BLAST of MS014115 vs. TAIR 10
Match: AT2G40470.1 (LOB domain-containing protein 15 )

HSP 1 Score: 162.2 bits (409), Expect = 3.7e-40
Identity = 79/141 (56.03%), Postives = 102/141 (72.34%), Query Frame = 0


Query: 11  TLSPCAACKLLRRRCAHDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRSDA 70
           T++PCAACKLLRRRCA +C F+PYF   EPHKFASVHKVFGASNV+KML E+PE QR+DA
Sbjct: 42  TITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADA 101

Query: 71  VSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQ------FPS 130
            +S+VYEAN R+RDPVYGC+GAIS+LQQQ+  LQ +L   ++E++  + R+       PS
Sbjct: 102 ANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREAVATLIVPS 161

Query: 131 TSTPSAAHSPETAGKLNIPAQ 146
            S  +  H+      +  P Q
Sbjct: 162 NSQVAGFHNSGGVSVIAPPPQ 182

[Close]

BLAST of MS014115 vs. TAIR 10
Match: AT1G07900.1 (LOB domain-containing protein 1 )

HSP 1 Score: 154.5 bits (389), Expect = 7.8e-38
Identity = 74/110 (67.27%), Postives = 88/110 (80.00%), Query Frame = 0


Query: 12  LSPCAACKLLRRRCAHDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRSDAV 71
           LSPCAACK+LRRRCA  CV APYFP  +P KF   H+VFGASN+ K LQELPE QR+DAV
Sbjct: 31  LSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAV 90

Query: 72  SSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQ 122
           +SMVYEA AR+RDPVYGC GAI  LQ+Q+  LQ QLA AQ E+V+M+ ++
Sbjct: 91  NSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQR 140

The following BLAST results are available for this feature:

BLAST of MS014115 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022149611.1	1.4e-89	99.40	LOB domain-containing protein 4 [Momordica charantia]	[more]
XP_004150042.1	2.3e-76	87.86	LOB domain-containing protein 4 [Cucumis sativus] >KGN46813.1 hypothetical prote...	[more]
XP_038902133.1	4.0e-76	87.86	LOB domain-containing protein 4-like [Benincasa hispida]	[more]
KAA0054642.1	1.1e-73	85.55	LOB domain-containing protein 4-like [Cucumis melo var. makuwa] >TYK08620.1 LOB ...	[more]
XP_022947417.1	5.4e-73	86.05	LOB domain-containing protein 4-like [Cucurbita moschata] >XP_022970811.1 LOB do...	[more]

BLAST of MS014115 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SHE9	7.1e-60	71.84	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
Q9SA51	1.2e-46	58.82	LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=...	[more]
Q8LBW3	4.2e-44	75.00	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]
Q8L5T5	5.3e-39	56.03	LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 S...	[more]
Q9LQR0	1.1e-36	67.27	LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=...	[more]

BLAST of MS014115 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D8X3	6.8e-90	99.40	LOB domain-containing protein 4 OS=Momordica charantia OX=3673 GN=LOC111017996 P...	[more]
A0A0A0KBA8	1.1e-76	87.86	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G139130 PE=3 SV...	[more]
A0A5D3CBA3	5.2e-74	85.55	LOB domain-containing protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A6J1I1K8	2.6e-73	86.05	LOB domain-containing protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111469678...	[more]
A0A6J1G6E3	2.6e-73	86.05	LOB domain-containing protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC1114512...	[more]

BLAST of MS014115 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31320.1	5.0e-61	71.84	LOB domain-containing protein 4	[more]
AT1G16530.1	8.3e-48	58.82	ASYMMETRIC LEAVES 2-like 9	[more]
AT2G30130.1	3.0e-45	75.00	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G40470.1	3.7e-40	56.03	LOB domain-containing protein 15	[more]
AT1G07900.1	7.8e-38	67.27	LOB domain-containing protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 93..113
None	No IPR available	PANTHER	PTHR31301:SF58	LOB DOMAIN-CONTAINING PROTEIN 3	coord: 2..164
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 2..164
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 14..111 e-value: 1.2E-43 score: 147.7
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 13..114 score: 27.285774

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS014115.1	MS014115.1	mRNA