MS014102 (gene) Bitter gourd (TR) v1

Overview
NameMS014102
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold5: 592084 .. 592197 (+)
RNA-Seq ExpressionMS014102
SyntenyMS014102
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCCAGATGATTAATGTCATAGACAATGTCTTCTTCAAGATTGTTTCTGTCGTGGAGGCCATTGTTTTGGTCTCCACACTCTGTTTCTTCTTCCTCTGCTGTGGGGGTCATGTC

mRNA sequence

TTCCAGATGATTAATGTCATAGACAATGTCTTCTTCAAGATTGTTTCTGTCGTGGAGGCCATTGTTTTGGTCTCCACACTCTGTTTCTTCTTCCTCTGCTGTGGGGGTCATGTC

Coding sequence (CDS)

TTCCAGATGATTAATGTCATAGACAATGTCTTCTTCAAGATTGTTTCTGTCGTGGAGGCCATTGTTTTGGTCTCCACACTCTGTTTCTTCTTCCTCTGCTGTGGGGGTCATGTC

Protein sequence

FQMINVIDNVFFKIVSVVEAIVLVSTLCFFFLCCGGHV
Homology
BLAST of MS014102 vs. NCBI nr
Match: KAG7010430.1 (hypothetical protein SDJN02_27223, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 56.2 bits (134), Expect = 7.0e-05
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 0

Query: 6  VIDNVFFKIVSVVEAIVLVSTLCFFFLCCG 36
          V+DNVFFKIVSVVEAIVLVSTLCFF+LCCG
Sbjct: 37 VVDNVFFKIVSVVEAIVLVSTLCFFYLCCG 66

BLAST of MS014102 vs. NCBI nr
Match: XP_015880074.1 (uncharacterized protein LOC107416129 [Ziziphus jujuba])

HSP 1 Score: 56.2 bits (134), Expect = 7.0e-05
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 0

Query: 4  INVIDNVFFKIVSVVEAIVLVSTLCFFFLCCGGH 38
          +N+ID V FKI+SVVEA+VLVSTLCFFFLCCG H
Sbjct: 35 LNIIDGVVFKILSVVEAVVLVSTLCFFFLCCGCH 68

BLAST of MS014102 vs. NCBI nr
Match: XP_011467587.1 (PREDICTED: uncharacterized protein LOC105352357 [Fragaria vesca subsp. vesca])

HSP 1 Score: 55.5 bits (132), Expect = 1.2e-04
Identity = 26/35 (74.29%), Postives = 33/35 (94.29%), Query Frame = 0

Query: 4  INVIDNVFFKIVSVVEAIVLVSTLCFFFLCCGGHV 39
          +++ID+V FKI+SVVEA+VLVSTLCFFFLCCG H+
Sbjct: 63 LSIIDDVVFKILSVVEAVVLVSTLCFFFLCCGCHI 97

BLAST of MS014102 vs. NCBI nr
Match: XP_024185284.1 (uncharacterized protein LOC112190089 [Rosa chinensis] >PRQ52094.1 hypothetical protein RchiOBHm_Chr2g0151771 [Rosa chinensis])

HSP 1 Score: 55.1 bits (131), Expect = 1.6e-04
Identity = 26/35 (74.29%), Postives = 32/35 (91.43%), Query Frame = 0

Query: 4  INVIDNVFFKIVSVVEAIVLVSTLCFFFLCCGGHV 39
          + +ID+V FKI+SVVEA+VLVSTLCFFFLCCG H+
Sbjct: 58 LRIIDDVVFKILSVVEAVVLVSTLCFFFLCCGCHI 92

BLAST of MS014102 vs. NCBI nr
Match: TQD80960.1 (hypothetical protein C1H46_033475 [Malus baccata])

HSP 1 Score: 54.3 bits (129), Expect = 2.7e-04
Identity = 26/35 (74.29%), Postives = 32/35 (91.43%), Query Frame = 0

Query: 4  INVIDNVFFKIVSVVEAIVLVSTLCFFFLCCGGHV 39
          I V+D+V FKI+SVVEA+VLVSTLCFF+LCCG H+
Sbjct: 46 ITVLDDVVFKILSVVEAVVLVSTLCFFYLCCGCHI 80

BLAST of MS014102 vs. ExPASy TrEMBL
Match: A0A6P3ZJJ1 (uncharacterized protein LOC107416129 OS=Ziziphus jujuba OX=326968 GN=LOC107416129 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.4e-05
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 0

Query: 4  INVIDNVFFKIVSVVEAIVLVSTLCFFFLCCGGH 38
          +N+ID V FKI+SVVEA+VLVSTLCFFFLCCG H
Sbjct: 35 LNIIDGVVFKILSVVEAVVLVSTLCFFFLCCGCH 68

BLAST of MS014102 vs. ExPASy TrEMBL
Match: A0A2P6S081 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0151771 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 7.6e-05
Identity = 26/35 (74.29%), Postives = 32/35 (91.43%), Query Frame = 0

Query: 4  INVIDNVFFKIVSVVEAIVLVSTLCFFFLCCGGHV 39
          + +ID+V FKI+SVVEA+VLVSTLCFFFLCCG H+
Sbjct: 58 LRIIDDVVFKILSVVEAVVLVSTLCFFFLCCGCHI 92

BLAST of MS014102 vs. ExPASy TrEMBL
Match: A0A498J528 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_032663 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.3e-04
Identity = 26/35 (74.29%), Postives = 32/35 (91.43%), Query Frame = 0

Query: 4  INVIDNVFFKIVSVVEAIVLVSTLCFFFLCCGGHV 39
          I V+D+V FKI+SVVEA+VLVSTLCFF+LCCG H+
Sbjct: 46 ITVLDDVVFKILSVVEAVVLVSTLCFFYLCCGCHI 80

BLAST of MS014102 vs. ExPASy TrEMBL
Match: A0A4P1RRM8 (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_19026 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.3e-04
Identity = 24/33 (72.73%), Postives = 30/33 (90.91%), Query Frame = 0

Query: 5  NVIDNVFFKIVSVVEAIVLVSTLCFFFLCCGGH 38
          N++D + FKI+S VEA+VLVSTLCFF+LCCGGH
Sbjct: 38 NIMDTIVFKILSFVEALVLVSTLCFFYLCCGGH 70

BLAST of MS014102 vs. ExPASy TrEMBL
Match: A0A540L3A7 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_033475 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.3e-04
Identity = 26/35 (74.29%), Postives = 32/35 (91.43%), Query Frame = 0

Query: 4  INVIDNVFFKIVSVVEAIVLVSTLCFFFLCCGGHV 39
          I V+D+V FKI+SVVEA+VLVSTLCFF+LCCG H+
Sbjct: 46 ITVLDDVVFKILSVVEAVVLVSTLCFFYLCCGCHI 80

BLAST of MS014102 vs. TAIR 10
Match: AT1G06475.1 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 3.0e-06
Identity = 21/36 (58.33%), Postives = 29/36 (80.56%), Query Frame = 0

Query: 3  MINVIDNVFFKIVSVVEAIVLVSTLCFFFLCCGGHV 39
          +  ++D V +K++ VVEA VLVSTLCFF+LCCG H+
Sbjct: 58 LTEIVDGVVYKVMYVVEAFVLVSTLCFFYLCCGCHI 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7010430.17.0e-0593.33hypothetical protein SDJN02_27223, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_015880074.17.0e-0579.41uncharacterized protein LOC107416129 [Ziziphus jujuba][more]
XP_011467587.11.2e-0474.29PREDICTED: uncharacterized protein LOC105352357 [Fragaria vesca subsp. vesca][more]
XP_024185284.11.6e-0474.29uncharacterized protein LOC112190089 [Rosa chinensis] >PRQ52094.1 hypothetical p... [more]
TQD80960.12.7e-0474.29hypothetical protein C1H46_033475 [Malus baccata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6P3ZJJ13.4e-0579.41uncharacterized protein LOC107416129 OS=Ziziphus jujuba OX=326968 GN=LOC10741612... [more]
A0A2P6S0817.6e-0574.29Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0151771 PE=4... [more]
A0A498J5281.3e-0474.29Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_032663 PE=4 SV=1[more]
A0A4P1RRM81.3e-0472.73Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_19026 PE=4 S... [more]
A0A540L3A71.3e-0474.29Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_033475 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G06475.13.0e-0658.33unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33726TRANSMEMBRANE PROTEINcoord: 3..37
NoneNo IPR availablePANTHERPTHR33726:SF8TRANSMEMBRANE PROTEINcoord: 3..37

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS014102.1MS014102.1mRNA