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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. CGATCACGTCGATCAATGAGACTGATGAGGGGAGAAGAACGAGTTGATAGGACTAAACAACTTCCACGTTCTATTCGTCTTCACATTCTCTCGTTGTTAACAATCGAAGAGGTTGCGAAGATGATATTTGTTCCACCATTAAGGGATGCGTGGACTCGTATTCCCAATCACACCTTCGAACAGAATGAATTTCATGACAATAATACTGGTATTCCTGATGCTCCACATTACAAC mRNA sequence CGATCACGTCGATCAATGAGACTGATGAGGGGAGAAGAACGAGTTGATAGGACTAAACAACTTCCACGTTCTATTCGTCTTCACATTCTCTCGTTGTTAACAATCGAAGAGGTTGCGAAGATGATATTTGTTCCACCATTAAGGGATGCGTGGACTCGTATTCCCAATCACACCTTCGAACAGAATGAATTTCATGACAATAATACTGGTATTCCTGATGCTCCACATTACAAC Coding sequence (CDS) CGATCACGTCGATCAATGAGACTGATGAGGGGAGAAGAACGAGTTGATAGGACTAAACAACTTCCACGTTCTATTCGTCTTCACATTCTCTCGTTGTTAACAATCGAAGAGGTTGCGAAGATGATATTTGTTCCACCATTAAGGGATGCGTGGACTCGTATTCCCAATCACACCTTCGAACAGAATGAATTTCATGACAATAATACTGGTATTCCTGATGCTCCACATTACAAC Protein sequence RSRRSMRLMRGEERVDRTKQLPRSIRLHILSLLTIEEVAKMIFVPPLRDAWTRIPNHTFEQNEFHDNNTGIPDAPHYN
Homology
BLAST of MS014078 vs. NCBI nr
Match: XP_022149727.1 (LOW QUALITY PROTEIN: putative F-box/LRR-repeat protein At3g18150 [Momordica charantia]) HSP 1 Score: 107.1 bits (266), Expect = 7.1e-20 Identity = 55/78 (70.51%), Postives = 60/78 (76.92%), Query Frame = 0 Query: 1 RSRRSMRLMRGEERVDRTKQLPRSIRLHILSLLTIEEVAKMIFVPPLRDAWTRIPNHTFE 60 RSRR RLMR EERVDR QLP SIR+ ILS L +EV KMI VPP RD WTR N TF+ Sbjct: 4 RSRRLKRLMREEERVDRISQLPHSIRVLILSFLPTKEVVKMILVPPFRDVWTRSRNLTFD 63
Query: 61 QNEFHDNNTGIPDAPHYN 79 QNEFHD+N+ IPDAPHYN Sbjct: 64 QNEFHDSNSRIPDAPHYN 81
BLAST of MS014078 vs. ExPASy TrEMBL
Match: A0A6J1D8S4 (LOW QUALITY PROTEIN: putative F-box/LRR-repeat protein At3g18150 OS=Momordica charantia OX=3673 GN=LOC111018085 PE=4 SV=1) HSP 1 Score: 107.1 bits (266), Expect = 3.4e-20 Identity = 55/78 (70.51%), Postives = 60/78 (76.92%), Query Frame = 0 Query: 1 RSRRSMRLMRGEERVDRTKQLPRSIRLHILSLLTIEEVAKMIFVPPLRDAWTRIPNHTFE 60 RSRR RLMR EERVDR QLP SIR+ ILS L +EV KMI VPP RD WTR N TF+ Sbjct: 4 RSRRLKRLMREEERVDRISQLPHSIRVLILSFLPTKEVVKMILVPPFRDVWTRSRNLTFD 63
Query: 61 QNEFHDNNTGIPDAPHYN 79 QNEFHD+N+ IPDAPHYN Sbjct: 64 QNEFHDSNSRIPDAPHYN 81
BLAST of MS014078 vs. ExPASy TrEMBL
Match: A0A1R3GTU6 (Zinc finger, CCCH-type OS=Corchorus capsularis OX=210143 GN=CCACVL1_23484 PE=4 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 7.7e-04 Identity = 28/68 (41.18%), Postives = 39/68 (57.35%), Query Frame = 0 Query: 12 EERVDRTKQLPRSIRLHILSLLTIEEVAKMIFVPPLRDAWTRIPNHTFEQNEFHDNNTGI 71 EE DR LP +I +HILS L I++ K + VP R+ W +P+ +F Q +HD + Sbjct: 418 EELDDRISSLPDNILVHILSFLPIKDAVKTVLVPRFRNLWNFLPSLSFNQCGYHDCASKY 477
Query: 72 -PDAPHYN 79 D PHYN Sbjct: 478 DEDGPHYN 485
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022149727.1 | 7.1e-20 | 70.51 | LOW QUALITY PROTEIN: putative F-box/LRR-repeat protein At3g18150 [Momordica char... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1D8S4 | 3.4e-20 | 70.51 | LOW QUALITY PROTEIN: putative F-box/LRR-repeat protein At3g18150 OS=Momordica ch... | [more] |
A0A1R3GTU6 | 7.7e-04 | 41.18 | Zinc finger, CCCH-type OS=Corchorus capsularis OX=210143 GN=CCACVL1_23484 PE=4 S... | [more] |
Match Name | E-value | Identity | Description | |
Relationships
The following mRNA feature(s) are a part of this gene:
Feature Name | Unique Name | Type |
MS014078.1 | MS014078.1 | mRNA |
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