MS014078 (gene) Bitter gourd (TR) v1

Overview
NameMS014078
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLOW QUALITY PROTEIN: putative F-box/LRR-repeat protein At3g18150
Locationscaffold5: 422620 .. 422853 (-)
RNA-Seq ExpressionMS014078
SyntenyMS014078
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CGATCACGTCGATCAATGAGACTGATGAGGGGAGAAGAACGAGTTGATAGGACTAAACAACTTCCACGTTCTATTCGTCTTCACATTCTCTCGTTGTTAACAATCGAAGAGGTTGCGAAGATGATATTTGTTCCACCATTAAGGGATGCGTGGACTCGTATTCCCAATCACACCTTCGAACAGAATGAATTTCATGACAATAATACTGGTATTCCTGATGCTCCACATTACAAC

mRNA sequence

CGATCACGTCGATCAATGAGACTGATGAGGGGAGAAGAACGAGTTGATAGGACTAAACAACTTCCACGTTCTATTCGTCTTCACATTCTCTCGTTGTTAACAATCGAAGAGGTTGCGAAGATGATATTTGTTCCACCATTAAGGGATGCGTGGACTCGTATTCCCAATCACACCTTCGAACAGAATGAATTTCATGACAATAATACTGGTATTCCTGATGCTCCACATTACAAC

Coding sequence (CDS)

CGATCACGTCGATCAATGAGACTGATGAGGGGAGAAGAACGAGTTGATAGGACTAAACAACTTCCACGTTCTATTCGTCTTCACATTCTCTCGTTGTTAACAATCGAAGAGGTTGCGAAGATGATATTTGTTCCACCATTAAGGGATGCGTGGACTCGTATTCCCAATCACACCTTCGAACAGAATGAATTTCATGACAATAATACTGGTATTCCTGATGCTCCACATTACAAC

Protein sequence

RSRRSMRLMRGEERVDRTKQLPRSIRLHILSLLTIEEVAKMIFVPPLRDAWTRIPNHTFEQNEFHDNNTGIPDAPHYN
Homology
BLAST of MS014078 vs. NCBI nr
Match: XP_022149727.1 (LOW QUALITY PROTEIN: putative F-box/LRR-repeat protein At3g18150 [Momordica charantia])

HSP 1 Score: 107.1 bits (266), Expect = 7.1e-20
Identity = 55/78 (70.51%), Postives = 60/78 (76.92%), Query Frame = 0

Query: 1  RSRRSMRLMRGEERVDRTKQLPRSIRLHILSLLTIEEVAKMIFVPPLRDAWTRIPNHTFE 60
          RSRR  RLMR EERVDR  QLP SIR+ ILS L  +EV KMI VPP RD WTR  N TF+
Sbjct: 4  RSRRLKRLMREEERVDRISQLPHSIRVLILSFLPTKEVVKMILVPPFRDVWTRSRNLTFD 63

Query: 61 QNEFHDNNTGIPDAPHYN 79
          QNEFHD+N+ IPDAPHYN
Sbjct: 64 QNEFHDSNSRIPDAPHYN 81

BLAST of MS014078 vs. ExPASy TrEMBL
Match: A0A6J1D8S4 (LOW QUALITY PROTEIN: putative F-box/LRR-repeat protein At3g18150 OS=Momordica charantia OX=3673 GN=LOC111018085 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.4e-20
Identity = 55/78 (70.51%), Postives = 60/78 (76.92%), Query Frame = 0

Query: 1  RSRRSMRLMRGEERVDRTKQLPRSIRLHILSLLTIEEVAKMIFVPPLRDAWTRIPNHTFE 60
          RSRR  RLMR EERVDR  QLP SIR+ ILS L  +EV KMI VPP RD WTR  N TF+
Sbjct: 4  RSRRLKRLMREEERVDRISQLPHSIRVLILSFLPTKEVVKMILVPPFRDVWTRSRNLTFD 63

Query: 61 QNEFHDNNTGIPDAPHYN 79
          QNEFHD+N+ IPDAPHYN
Sbjct: 64 QNEFHDSNSRIPDAPHYN 81

BLAST of MS014078 vs. ExPASy TrEMBL
Match: A0A1R3GTU6 (Zinc finger, CCCH-type OS=Corchorus capsularis OX=210143 GN=CCACVL1_23484 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 7.7e-04
Identity = 28/68 (41.18%), Postives = 39/68 (57.35%), Query Frame = 0

Query: 12  EERVDRTKQLPRSIRLHILSLLTIEEVAKMIFVPPLRDAWTRIPNHTFEQNEFHDNNTGI 71
           EE  DR   LP +I +HILS L I++  K + VP  R+ W  +P+ +F Q  +HD  +  
Sbjct: 418 EELDDRISSLPDNILVHILSFLPIKDAVKTVLVPRFRNLWNFLPSLSFNQCGYHDCASKY 477

Query: 72  -PDAPHYN 79
             D PHYN
Sbjct: 478 DEDGPHYN 485

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022149727.17.1e-2070.51LOW QUALITY PROTEIN: putative F-box/LRR-repeat protein At3g18150 [Momordica char... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1D8S43.4e-2070.51LOW QUALITY PROTEIN: putative F-box/LRR-repeat protein At3g18150 OS=Momordica ch... [more]
A0A1R3GTU67.7e-0441.18Zinc finger, CCCH-type OS=Corchorus capsularis OX=210143 GN=CCACVL1_23484 PE=4 S... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS014078.1MS014078.1mRNA