MS014049 (gene) Bitter gourd (TR) v1

Overview
NameMS014049
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionAdaptin ear-binding coat-associated protein 1 NECAP-1 isoform 2
Locationscaffold5: 208873 .. 208989 (+)
RNA-Seq ExpressionMS014049
SyntenyMS014049
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCATGGAGGAGCAGCAGAAGACGGCGAACGATCAAGCAGTCAAGGAGGATCACGAGGAGAATGAAGCAATTGAGATTGTTCTCTTTCAAGTTTCTGAATGTTATGTCTATTTGGTA

mRNA sequence

TCCATGGAGGAGCAGCAGAAGACGGCGAACGATCAAGCAGTCAAGGAGGATCACGAGGAGAATGAAGCAATTGAGATTGTTCTCTTTCAAGTTTCTGAATGTTATGTCTATTTGGTA

Coding sequence (CDS)

TCCATGGAGGAGCAGCAGAAGACGGCGAACGATCAAGCAGTCAAGGAGGATCACGAGGAGAATGAAGCAATTGAGATTGTTCTCTTTCAAGTTTCTGAATGTTATGTCTATTTGGTA

Protein sequence

SMEEQQKTANDQAVKEDHEENEAIEIVLFQVSECYVYLV
Homology
BLAST of MS014049 vs. NCBI nr
Match: XP_022149778.1 (uncharacterized protein At1g03900 [Momordica charantia])

HSP 1 Score: 72.4 bits (176), Expect = 9.7e-10
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0

Query: 2  MEEQQKTANDQAVKEDHEENEAIEIVLFQVSECYVYLV 40
          MEEQQKTANDQAVKEDHEENEAIEIVLFQVSECYVYL+
Sbjct: 1  MEEQQKTANDQAVKEDHEENEAIEIVLFQVSECYVYLI 38

BLAST of MS014049 vs. NCBI nr
Match: KAG7034895.1 (hypothetical protein SDJN02_01688 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 65.1 bits (157), Expect = 1.5e-07
Identity = 32/38 (84.21%), Postives = 36/38 (94.74%), Query Frame = 0

Query: 2  MEEQQKTANDQAVKEDHEENEAIEIVLFQVSECYVYLV 40
          MEEQQKTA DQ +KEDHEEN+AIE+VLFQVSECYVYL+
Sbjct: 1  MEEQQKTAKDQELKEDHEENDAIELVLFQVSECYVYLI 38

BLAST of MS014049 vs. NCBI nr
Match: XP_022970894.1 (uncharacterized protein At1g03900 [Cucurbita maxima])

HSP 1 Score: 65.1 bits (157), Expect = 1.5e-07
Identity = 32/38 (84.21%), Postives = 36/38 (94.74%), Query Frame = 0

Query: 2  MEEQQKTANDQAVKEDHEENEAIEIVLFQVSECYVYLV 40
          MEEQQKTA DQ +KEDHEEN+AIE+VLFQVSECYVYL+
Sbjct: 1  MEEQQKTAKDQELKEDHEENDAIELVLFQVSECYVYLI 38

BLAST of MS014049 vs. NCBI nr
Match: XP_022947234.1 (uncharacterized protein At1g03900 [Cucurbita moschata])

HSP 1 Score: 65.1 bits (157), Expect = 1.5e-07
Identity = 32/38 (84.21%), Postives = 36/38 (94.74%), Query Frame = 0

Query: 2  MEEQQKTANDQAVKEDHEENEAIEIVLFQVSECYVYLV 40
          MEEQQKTA DQ +KEDHEEN+AIE+VLFQVSECYVYL+
Sbjct: 1  MEEQQKTAKDQELKEDHEENDAIELVLFQVSECYVYLI 38

BLAST of MS014049 vs. NCBI nr
Match: XP_023534216.1 (uncharacterized protein At1g03900 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 65.1 bits (157), Expect = 1.5e-07
Identity = 32/38 (84.21%), Postives = 36/38 (94.74%), Query Frame = 0

Query: 2  MEEQQKTANDQAVKEDHEENEAIEIVLFQVSECYVYLV 40
          MEEQQKTA DQ +KEDHEEN+AIE+VLFQVSECYVYL+
Sbjct: 1  MEEQQKTAKDQELKEDHEENDAIELVLFQVSECYVYLI 38

BLAST of MS014049 vs. ExPASy TrEMBL
Match: A0A6J1D7P3 (uncharacterized protein At1g03900 OS=Momordica charantia OX=3673 GN=LOC111018125 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.7e-10
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0

Query: 2  MEEQQKTANDQAVKEDHEENEAIEIVLFQVSECYVYLV 40
          MEEQQKTANDQAVKEDHEENEAIEIVLFQVSECYVYL+
Sbjct: 1  MEEQQKTANDQAVKEDHEENEAIEIVLFQVSECYVYLI 38

BLAST of MS014049 vs. ExPASy TrEMBL
Match: A0A6J1I6Z7 (uncharacterized protein At1g03900 OS=Cucurbita maxima OX=3661 GN=LOC111469730 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.5e-08
Identity = 32/38 (84.21%), Postives = 36/38 (94.74%), Query Frame = 0

Query: 2  MEEQQKTANDQAVKEDHEENEAIEIVLFQVSECYVYLV 40
          MEEQQKTA DQ +KEDHEEN+AIE+VLFQVSECYVYL+
Sbjct: 1  MEEQQKTAKDQELKEDHEENDAIELVLFQVSECYVYLI 38

BLAST of MS014049 vs. ExPASy TrEMBL
Match: A0A6J1G674 (uncharacterized protein At1g03900 OS=Cucurbita moschata OX=3662 GN=LOC111451158 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.5e-08
Identity = 32/38 (84.21%), Postives = 36/38 (94.74%), Query Frame = 0

Query: 2  MEEQQKTANDQAVKEDHEENEAIEIVLFQVSECYVYLV 40
          MEEQQKTA DQ +KEDHEEN+AIE+VLFQVSECYVYL+
Sbjct: 1  MEEQQKTAKDQELKEDHEENDAIELVLFQVSECYVYLI 38

BLAST of MS014049 vs. ExPASy TrEMBL
Match: A0A6J1FX33 (uncharacterized protein At1g03900-like OS=Cucurbita moschata OX=3662 GN=LOC111449048 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 30/37 (81.08%), Postives = 35/37 (94.59%), Query Frame = 0

Query: 3  EEQQKTANDQAVKEDHEENEAIEIVLFQVSECYVYLV 40
          E+QQKTA DQ ++EDHEENEAIE+VLFQVSECYVYL+
Sbjct: 4  EKQQKTAKDQKLQEDHEENEAIELVLFQVSECYVYLI 40

BLAST of MS014049 vs. ExPASy TrEMBL
Match: A0A5A7UGZ1 (Adaptin ear-binding coat-associated protein 1 NECAP-1 isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G001230 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.3e-04
Identity = 25/37 (67.57%), Postives = 33/37 (89.19%), Query Frame = 0

Query: 3  EEQQKTANDQAVKEDHEENEAIEIVLFQVSECYVYLV 40
          E+QQKT  +Q +++DHE+NEAIE+VLFQV ECYVYL+
Sbjct: 3  EQQQKTPKNQEIQDDHEDNEAIELVLFQVPECYVYLI 39

BLAST of MS014049 vs. TAIR 10
Match: AT3G58600.1 (Adaptin ear-binding coat-associated protein 1 NECAP-1 )

HSP 1 Score: 45.4 bits (106), Expect = 1.2e-05
Identity = 23/39 (58.97%), Postives = 30/39 (76.92%), Query Frame = 0

Query: 1  SMEEQQKTANDQAVKEDHEENEAIEIVLFQVSECYVYLV 40
          +MEE +K++ D    +D+EE EAIEI LFQV ECYVYL+
Sbjct: 9  TMEEDKKSSTDPVNVDDNEEREAIEIALFQVPECYVYLI 47

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022149778.19.7e-1097.37uncharacterized protein At1g03900 [Momordica charantia][more]
KAG7034895.11.5e-0784.21hypothetical protein SDJN02_01688 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022970894.11.5e-0784.21uncharacterized protein At1g03900 [Cucurbita maxima][more]
XP_022947234.11.5e-0784.21uncharacterized protein At1g03900 [Cucurbita moschata][more]
XP_023534216.11.5e-0784.21uncharacterized protein At1g03900 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1D7P34.7e-1097.37uncharacterized protein At1g03900 OS=Momordica charantia OX=3673 GN=LOC111018125... [more]
A0A6J1I6Z77.5e-0884.21uncharacterized protein At1g03900 OS=Cucurbita maxima OX=3661 GN=LOC111469730 PE... [more]
A0A6J1G6747.5e-0884.21uncharacterized protein At1g03900 OS=Cucurbita moschata OX=3662 GN=LOC111451158 ... [more]
A0A6J1FX331.1e-0681.08uncharacterized protein At1g03900-like OS=Cucurbita moschata OX=3662 GN=LOC11144... [more]
A0A5A7UGZ11.3e-0467.57Adaptin ear-binding coat-associated protein 1 NECAP-1 isoform 2 OS=Cucumis melo ... [more]
Match NameE-valueIdentityDescription
AT3G58600.11.2e-0558.97Adaptin ear-binding coat-associated protein 1 NECAP-1 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS014049.1MS014049.1mRNA