MS014036 (gene) Bitter gourd (TR) v1

Overview
NameMS014036
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold5: 138122 .. 138349 (-)
RNA-Seq ExpressionMS014036
SyntenyMS014036
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCCGATCAATTCTTGCAACCGATCGCGGTAGCTATGGAGATGTCGCCTTGGTCAGCTCTAGCGGGTTATTTTTGCTTTCGGTCATCTTTTTATCGATATCTCTCATATCAATGATCGTATTTGCTTGTGGGGACTCTAGTGACAATCCTAAGAAAAACAGTGGCGGTGGAGGTGGTGGTTGTGGTGGTGGTGGCGGCGGTGGTTGTGGTGGTGGTGGCGGAGGG

mRNA sequence

ATGACCCGATCAATTCTTGCAACCGATCGCGGTAGCTATGGAGATGTCGCCTTGGTCAGCTCTAGCGGGTTATTTTTGCTTTCGGTCATCTTTTTATCGATATCTCTCATATCAATGATCGTATTTGCTTGTGGGGACTCTAGTGACAATCCTAAGAAAAACAGTGGCGGTGGAGGTGGTGGTTGTGGTGGTGGTGGCGGCGGTGGTTGTGGTGGTGGTGGCGGAGGG

Coding sequence (CDS)

ATGACCCGATCAATTCTTGCAACCGATCGCGGTAGCTATGGAGATGTCGCCTTGGTCAGCTCTAGCGGGTTATTTTTGCTTTCGGTCATCTTTTTATCGATATCTCTCATATCAATGATCGTATTTGCTTGTGGGGACTCTAGTGACAATCCTAAGAAAAACAGTGGCGGTGGAGGTGGTGGTTGTGGTGGTGGTGGCGGCGGTGGTTGTGGTGGTGGTGGCGGAGGG

Protein sequence

MTRSILATDRGSYGDVALVSSSGLFLLSVIFLSISLISMIVFACGDSSDNPKKNSGGGGGGCGGGGGGGCGGGGGG
Homology
BLAST of MS014036 vs. NCBI nr
Match: KAG6603228.1 (hypothetical protein SDJN03_03837, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.4 bits (163), Expect = 6.1e-08
Identity = 55/84 (65.48%), Postives = 62/84 (73.81%), Query Frame = 0

Query: 1  MTRSILATDRGSYGDVALVSSSGLFLLSVIFLSISLISMIVFACGD-SSDNPKKNS---- 60
          M RSI A D G  GDV L SS GL LL+ + LS+SL+SMI+FACGD SSDN +K +    
Sbjct: 1  MGRSIPAADGGGLGDVTLFSSGGLLLLATVLLSLSLVSMIIFACGDSSSDNKRKRNGGGC 60

Query: 61 -GGGGGGCGG--GGGGGCGGGGGG 77
           GGGGGGCGG  GGGGGCGGGGGG
Sbjct: 61 GGGGGGGCGGDVGGGGGCGGGGGG 84

BLAST of MS014036 vs. NCBI nr
Match: KAG6603229.1 (hypothetical protein SDJN03_03838, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.9 bits (154), Expect = 6.7e-07
Identity = 48/77 (62.34%), Postives = 55/77 (71.43%), Query Frame = 0

Query: 1  MTRSILATDRGSYGDVALVSSSGLFLLSVIFLSISLISMIVFACGDSS--DNPKKNSGGG 60
          M R I A D G  GDV L SS GL LL+ I +S+SL+SMI+FACGDSS  +  K+N GGG
Sbjct: 1  MGRPIPAADGGGLGDVTLFSSGGLLLLATILMSLSLVSMIIFACGDSSRKNKRKRNGGGG 60

Query: 61 GGGCGGGGGGGCGGGGG 76
          G GC   GGGGCGGGGG
Sbjct: 61 GAGC---GGGGCGGGGG 74

BLAST of MS014036 vs. NCBI nr
Match: KAG6604774.1 (hypothetical protein SDJN03_02091, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 61.2 bits (147), Expect = 4.4e-06
Identity = 52/78 (66.67%), Postives = 58/78 (74.36%), Query Frame = 0

Query: 1  MTRSILATDRGSYG--DVALVSSSGLFLLSVIFLSISLISMIVFACGDSSDNPKKNSGGG 60
          M R ILA   G  G  DV LVSS GLFLLS I LSISL+SMI+FACG+S+D  +K+ GGG
Sbjct: 1  MGRPILAAAGGGGGFQDVTLVSSGGLFLLSAILLSISLVSMIIFACGNSNDPKRKDGGGG 60

Query: 61 GGGCGGGGGGGCGGGGGG 77
           GG  GGGGGGCGGG GG
Sbjct: 61 CGGGDGGGGGGCGGGCGG 78

BLAST of MS014036 vs. NCBI nr
Match: KAG7960792.1 (hypothetical protein I3843_10G143600 [Carya illinoinensis])

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 45/86 (52.33%), Postives = 61/86 (70.93%), Query Frame = 0

Query: 1  MTRSILATDRGSYG----DVALVSSSGLFLLSVIFLSISLISMIVFACGDSSDNPKKNSG 60
          M+R  ++ D G++      VAL SSSGL L+ +I +S+S+ISM++FACGD ++  ++  G
Sbjct: 1  MSRDFVSLDVGAHAHDEMGVALKSSSGLLLVGMIIMSLSIISMVIFACGDDNNRQERGGG 60

Query: 61 GGGGGC------GGGGGGGCGGGGGG 77
          GGGGGC      GGGGGGGCGGGGGG
Sbjct: 61 GGGGGCGSGGGGGGGGGGGCGGGGGG 86

BLAST of MS014036 vs. NCBI nr
Match: TQE03432.1 (hypothetical protein C1H46_010997 [Malus baccata])

HSP 1 Score: 54.3 bits (129), Expect = 5.3e-04
Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = 0

Query: 1  MTRSILATDRGSYGDVALV----SSSGLFLLSVIFLSISLISMIVFACGDSSDNPKKNS- 60
          M R+ +    G  G+VA++    +S GL LL +I +S+SLISM++FACGDSS +P+    
Sbjct: 1  MARTYVGLGGGHAGEVAIMMPDHNSGGLLLLCMILMSLSLISMVIFACGDSSGSPRPRPG 60

Query: 61 ----GGGGGGC-GGGGGGGCGGGG 75
              GGGGGGC GGGGGGGCGGGG
Sbjct: 61 GGGWGGGGGGCGGGGGGGGCGGGG 84

BLAST of MS014036 vs. ExPASy TrEMBL
Match: A0A540MXA9 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_010997 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.6e-04
Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = 0

Query: 1  MTRSILATDRGSYGDVALV----SSSGLFLLSVIFLSISLISMIVFACGDSSDNPKKNS- 60
          M R+ +    G  G+VA++    +S GL LL +I +S+SLISM++FACGDSS +P+    
Sbjct: 1  MARTYVGLGGGHAGEVAIMMPDHNSGGLLLLCMILMSLSLISMVIFACGDSSGSPRPRPG 60

Query: 61 ----GGGGGGC-GGGGGGGCGGGG 75
              GGGGGGC GGGGGGGCGGGG
Sbjct: 61 GGGWGGGGGGCGGGGGGGGCGGGG 84

BLAST of MS014036 vs. ExPASy TrEMBL
Match: A0A540LEY3 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_029325 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.8e-04
Identity = 46/84 (54.76%), Postives = 58/84 (69.05%), Query Frame = 0

Query: 1  MTRSILATDRGSYGDVALV----SSSGLFLLSVIFLSISLISMIVFACGDSSDNPKKNSG 60
          M R+ +    G  G+VA++    +S GL LL +I +S+SLISM++FACGDSS  P+   G
Sbjct: 1  MARTYVGLGGGHAGEVAIMMPDHNSGGLLLLCMILMSLSLISMVIFACGDSSGKPRPGGG 60

Query: 61 ---GGGGGC-GGGGGGGCGGGGGG 77
             GG GGC GGGGGGGCGGGGGG
Sbjct: 61 GYTGGAGGCGGGGGGGGCGGGGGG 84

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6603228.16.1e-0865.48hypothetical protein SDJN03_03837, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6603229.16.7e-0762.34hypothetical protein SDJN03_03838, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6604774.14.4e-0666.67hypothetical protein SDJN03_02091, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7960792.11.1e-0452.33hypothetical protein I3843_10G143600 [Carya illinoinensis][more]
TQE03432.15.3e-0453.57hypothetical protein C1H46_010997 [Malus baccata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A540MXA92.6e-0453.57Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_010997 PE=4 SV=1[more]
A0A540LEY39.8e-0454.76Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_029325 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..76
NoneNo IPR availablePANTHERPTHR35420OS02G0198500 PROTEINcoord: 1..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS014036.1MS014036.1mRNA