MS014023 (gene) Bitter gourd (TR) v1

Overview
NameMS014023
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionpentatricopeptide repeat-containing protein At1g73400, mitochondrial
Locationscaffold5: 68124 .. 68258 (-)
RNA-Seq ExpressionMS014023
SyntenyMS014023
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAATGGTAAACAAGGGAATGAAACCGCCTTATAGGGAATTTGCCATATCTCTGGTGCAACTATATGTTAATGGTAATATCCAGGCAATCCACAGGCTTTCTGAATACATGAGAAAATGCTACAACCTTGGCATG

mRNA sequence

GAAATGGTAAACAAGGGAATGAAACCGCCTTATAGGGAATTTGCCATATCTCTGGTGCAACTATATGTTAATGGTAATATCCAGGCAATCCACAGGCTTTCTGAATACATGAGAAAATGCTACAACCTTGGCATG

Coding sequence (CDS)

GAAATGGTAAACAAGGGAATGAAACCGCCTTATAGGGAATTTGCCATATCTCTGGTGCAACTATATGTTAATGGTAATATCCAGGCAATCCACAGGCTTTCTGAATACATGAGAAAATGCTACAACCTTGGCATG

Protein sequence

EMVNKGMKPPYREFAISLVQLYVNGNIQAIHRLSEYMRKCYNLGM
Homology
[Close]
BLAST of MS014023 vs. NCBI nr
Match: XP_038874680.1 (pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X1 [Benincasa hispida] >XP_038874681.1 pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X1 [Benincasa hispida] >XP_038874682.1 pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X1 [Benincasa hispida])

HSP 1 Score: 66.2 bits (160), Expect = 8.0e-08
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 1   EMVNKGMKPPYREFAISLVQLYVNGNIQAIHRLSEYMRKCYNLGM 46
           E+VNKGMK PYR+F   L+QL VNGN+QAIHRLSE+MRK YN  M
Sbjct: 497 EVVNKGMKLPYRKFDSFLMQLSVNGNLQAIHRLSEHMRKFYNPAM 541

[Close]
BLAST of MS014023 vs. NCBI nr
Match: XP_038874683.1 (pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X2 [Benincasa hispida])

HSP 1 Score: 66.2 bits (160), Expect = 8.0e-08
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 1   EMVNKGMKPPYREFAISLVQLYVNGNIQAIHRLSEYMRKCYNLGM 46
           E+VNKGMK PYR+F   L+QL VNGN+QAIHRLSE+MRK YN  M
Sbjct: 395 EVVNKGMKLPYRKFDSFLMQLSVNGNLQAIHRLSEHMRKFYNPAM 439

[Close]
BLAST of MS014023 vs. NCBI nr
Match: XP_023006419.1 (pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X2 [Cucurbita maxima])

HSP 1 Score: 65.1 bits (157), Expect = 1.8e-07
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 1   EMVNKGMKPPYREFAISLVQLYVNGNIQAIHRLSEYMRKCYNLGM 46
           E+VNKGMK PYR+F   L+QL VNGN+QAIHRLSE+MR+ YN  M
Sbjct: 404 EVVNKGMKLPYRKFDSFLMQLSVNGNLQAIHRLSEHMRRFYNPAM 448

[Close]
BLAST of MS014023 vs. NCBI nr
Match: XP_023548130.1 (pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X1 [Cucurbita pepo subsp. pepo] >XP_023548131.1 pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 65.1 bits (157), Expect = 1.8e-07
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 1   EMVNKGMKPPYREFAISLVQLYVNGNIQAIHRLSEYMRKCYNLGM 46
           E+VNKGMK PYR+F   L+QL VNGN+QAIHRLSE+MR+ YN  M
Sbjct: 498 EVVNKGMKLPYRKFDSFLMQLSVNGNLQAIHRLSEHMRRFYNPAM 542

[Close]
BLAST of MS014023 vs. NCBI nr
Match: XP_022958749.1 (pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X2 [Cucurbita moschata])

HSP 1 Score: 65.1 bits (157), Expect = 1.8e-07
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 1   EMVNKGMKPPYREFAISLVQLYVNGNIQAIHRLSEYMRKCYNLGM 46
           E+VNKGMK PYR+F   L+QL VNGN+QAIHRLSE+MR+ YN  M
Sbjct: 395 EVVNKGMKLPYRKFDSFLMQLSVNGNLQAIHRLSEHMRRFYNPAM 439

[Close]
BLAST of MS014023 vs. ExPASy Swiss-Prot
Match: Q9FX35 (Pentatricopeptide repeat-containing protein At1g73400, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g73400 PE=2 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 2.7e-06
Identity = 24/45 (53.33%), Postives = 34/45 (75.56%), Query Frame = 0 

Query: 1   EMVNKGMKPPYREFAISLVQLYVNGNIQAIHRLSEYMRKCYNLGM 46
           E+VNKG+K PYR F   L++L   GN++AIH++SE+M+K YN  M
Sbjct: 506 EVVNKGLKLPYRVFDSFLMRLSEVGNLKAIHKVSEHMKKFYNHSM 550

[Close]
BLAST of MS014023 vs. ExPASy TrEMBL
Match: A0A6J1KVS8 (pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499151 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.7e-08
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 1   EMVNKGMKPPYREFAISLVQLYVNGNIQAIHRLSEYMRKCYNLGM 46
           E+VNKGMK PYR+F   L+QL VNGN+QAIHRLSE+MR+ YN  M
Sbjct: 497 EVVNKGMKLPYRKFDSFLMQLSVNGNLQAIHRLSEHMRRFYNPAM 541

[Close]
BLAST of MS014023 vs. ExPASy TrEMBL
Match: A0A6J1H3Y5 (pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111459932 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.7e-08
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 1   EMVNKGMKPPYREFAISLVQLYVNGNIQAIHRLSEYMRKCYNLGM 46
           E+VNKGMK PYR+F   L+QL VNGN+QAIHRLSE+MR+ YN  M
Sbjct: 498 EVVNKGMKLPYRKFDSFLMQLSVNGNLQAIHRLSEHMRRFYNPAM 542

[Close]
BLAST of MS014023 vs. ExPASy TrEMBL
Match: A0A6J1L243 (pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111499151 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.7e-08
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 1   EMVNKGMKPPYREFAISLVQLYVNGNIQAIHRLSEYMRKCYNLGM 46
           E+VNKGMK PYR+F   L+QL VNGN+QAIHRLSE+MR+ YN  M
Sbjct: 404 EVVNKGMKLPYRKFDSFLMQLSVNGNLQAIHRLSEHMRRFYNPAM 448

[Close]
BLAST of MS014023 vs. ExPASy TrEMBL
Match: A0A6J1H613 (pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111459932 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.7e-08
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 1   EMVNKGMKPPYREFAISLVQLYVNGNIQAIHRLSEYMRKCYNLGM 46
           E+VNKGMK PYR+F   L+QL VNGN+QAIHRLSE+MR+ YN  M
Sbjct: 395 EVVNKGMKLPYRKFDSFLMQLSVNGNLQAIHRLSEHMRRFYNPAM 439

[Close]
BLAST of MS014023 vs. ExPASy TrEMBL
Match: A0A1S3C5I6 (pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496893 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.5e-07
Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 1   EMVNKGMKPPYREFAISLVQLYVNGNIQAIHRLSEYMRKCYNLGM 46
           E+VNKGMK P+R+F   L+QL VNGN++AIHRLSE+MRK YN  M
Sbjct: 497 EVVNKGMKLPFRKFDSFLMQLSVNGNLKAIHRLSEHMRKFYNRAM 541

[Close]
BLAST of MS014023 vs. TAIR 10
Match: AT1G73400.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 51.6 bits (122), Expect = 1.9e-07
Identity = 24/45 (53.33%), Postives = 34/45 (75.56%), Query Frame = 0 

Query: 1   EMVNKGMKPPYREFAISLVQLYVNGNIQAIHRLSEYMRKCYNLGM 46
           E+VNKG+K PYR F   L++L   GN++AIH++SE+M+K YN  M
Sbjct: 506 EVVNKGLKLPYRVFDSFLMRLSEVGNLKAIHKVSEHMKKFYNHSM 550

The following BLAST results are available for this feature:
BLAST of MS014023 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038874680.18.0e-0871.11pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X1 ... [more]
XP_038874683.18.0e-0871.11pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X2 ... [more]
XP_023006419.11.8e-0768.89pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X2 ... [more]
XP_023548130.11.8e-0768.89pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X1 ... [more]
XP_022958749.11.8e-0768.89pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X2 ... [more]
BLAST of MS014023 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FX352.7e-0653.33Pentatricopeptide repeat-containing protein At1g73400, mitochondrial OS=Arabidop... [more]
BLAST of MS014023 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KVS88.7e-0868.89pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X1 ... [more]
A0A6J1H3Y58.7e-0868.89pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X1 ... [more]
A0A6J1L2438.7e-0868.89pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X2 ... [more]
A0A6J1H6138.7e-0868.89pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X2 ... [more]
A0A1S3C5I62.5e-0766.67pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X1 ... [more]
BLAST of MS014023 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G73400.11.9e-0753.33Pentatricopeptide repeat (PPR) superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS014023.1MS014023.1mRNA