MS014005 (gene) Bitter gourd (TR) v1

Overview


Name	MS014005
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	30S ribosomal protein S12, chloroplastic
Location	scaffold607: 1562774 .. 1562902 (-)
RNA-Seq Expression	MS014005
Synteny	MS014005

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAACTCCAAAGTTTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTG

mRNA sequence

AAGAACTCCAAAGTTTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTG

Coding sequence (CDS)

AAGAACTCCAAAGTTTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTG

Protein sequence

KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

Homology

[Close]

BLAST of MS014005 vs. NCBI nr
Match: EYU43439.1 (hypothetical protein MIMGU_mgv11b016653mg, partial [Erythranthe guttata])

HSP 1 Score: 82.8 bits (203), Expect = 7.9e-13
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 1   KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 44
           ++S VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 110 EHSSVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 152

[Close]

BLAST of MS014005 vs. NCBI nr
Match: YP_010027249.1 (ribosomal protein S12 [Oreocharis cotinifolia] >YP_010027295.1 ribosomal protein S12 [Oreocharis cotinifolia] >QOS04325.1 ribosomal protein S12 [Oreocharis cotinifolia] >QOS04370.1 ribosomal protein S12 [Oreocharis cotinifolia])

HSP 1 Score: 82.8 bits (203), Expect = 7.9e-13
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 1   KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 44
           ++S VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 92  EHSSVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 134

[Close]

BLAST of MS014005 vs. NCBI nr
Match: AKJ77720.1 (ribosomal protein S12 [Perilla frutescens] >AKJ77770.1 ribosomal protein S12 [Perilla frutescens])

HSP 1 Score: 82.8 bits (203), Expect = 7.9e-13
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 1   KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 44
           ++S VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 92  EHSSVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 134

[Close]

BLAST of MS014005 vs. NCBI nr
Match: QDB64107.1 (ribosomal protein S12 [Elsholtzia splendens])

HSP 1 Score: 82.8 bits (203), Expect = 7.9e-13
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 1   KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 44
           ++S VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 83  EHSSVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 125

[Close]

BLAST of MS014005 vs. NCBI nr
Match: YP_007379186.1 (ribosomal protein S12 [Tectona grandis] >YP_009365639.1 ribosomal protein S12 [Digitalis lanata] >YP_009365684.1 ribosomal protein S12 [Digitalis lanata] >YP_009940853.1 ribosomal protein S12 [Leucophyllum frutescens] >YP_009940898.1 ribosomal protein S12 [Leucophyllum frutescens] >YP_009941199.1 ribosomal protein S12 [Diocirea violacea] >YP_009941245.1 ribosomal protein S12 [Diocirea violacea] >YP_009941285.1 ribosomal protein S12 [Eremophila oppositifolia] >YP_009941330.1 ribosomal protein S12 [Eremophila oppositifolia] >YP_010154790.1 ribosomal protein S12 [Ocimum gratissimum] >AJS14479.1 ribosomal protein S12 [Ruellia breedlovei] >QOC70171.1 ribosomal protein S12 [Calamphoreus inflatus] >QUV75004.1 ribosomal protein S12 [Callicarpa integerrima var. chinensis] >ARJ61158.1 ribosomal protein S12 [Digitalis lanata] >ARJ61159.1 ribosomal protein S12 [Digitalis lanata])

HSP 1 Score: 82.8 bits (203), Expect = 7.9e-13
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 1   KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 44
           ++S VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 76  EHSSVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 118

[Close]

BLAST of MS014005 vs. ExPASy Swiss-Prot
Match: Q1KXY0 (30S ribosomal protein S12, chloroplastic OS=Helianthus annuus OX=4232 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.8e-15
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 1   KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 44
           ++S VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 76  EHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 118

[Close]

BLAST of MS014005 vs. ExPASy Swiss-Prot
Match: Q332V3 (30S ribosomal protein S12, chloroplastic OS=Lactuca sativa OX=4236 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.8e-15
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 1   KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 44
           ++S VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 76  EHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 118

[Close]

BLAST of MS014005 vs. ExPASy Swiss-Prot
Match: Q0G9J5 (30S ribosomal protein S12, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.8e-15
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 1   KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 44
           ++S VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 76  EHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 118

[Close]

BLAST of MS014005 vs. ExPASy Swiss-Prot
Match: P30060 (Plastid 30S ribosomal protein S12 OS=Epifagus virginiana OX=4177 GN=rps12-A PE=2 SV=2)

HSP 1 Score: 77.8 bits (190), Expect = 3.3e-14
Identity = 36/40 (90.00%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 1   KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 41
           ++S VLVRGGRVKDLPGVRYHI+RGTLDAVGVKDRQQGRS
Sbjct: 76  EHSSVLVRGGRVKDLPGVRYHIIRGTLDAVGVKDRQQGRS 115

[Close]

BLAST of MS014005 vs. ExPASy Swiss-Prot
Match: A4QJV5 (30S ribosomal protein S12-A, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.4e-14
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 1   KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 41
           ++S VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Sbjct: 76  EHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 115

[Close]

BLAST of MS014005 vs. ExPASy TrEMBL
Match: A0A6M8PPW2 (30S ribosomal protein S12, chloroplastic OS=Streptocarpus ionanthus subsp. velutinus OX=86150 GN=rps12 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.8e-13
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 1   KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 44
           ++S VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 76  EHSSVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 118

[Close]

BLAST of MS014005 vs. ExPASy TrEMBL
Match: A0A6M5U745 (30S ribosomal protein S12, chloroplastic OS=Catalpa speciosa OX=155717 GN=rps12 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.8e-13
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 1   KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 44
           ++S VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 76  EHSSVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 118

[Close]

BLAST of MS014005 vs. ExPASy TrEMBL
Match: A0A7S6U9G2 (Ribosomal protein S12 OS=Catalpa fargesii OX=71605 GN=rps12 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.8e-13
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 1   KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 44
           ++S VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 76  EHSSVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 118

[Close]

BLAST of MS014005 vs. ExPASy TrEMBL
Match: A0A2H4NSD4 (30S ribosomal protein S12, chloroplastic OS=Primulina eburnea OX=1245227 GN=rps12 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.8e-13
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 1   KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 44
           ++S VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 76  EHSSVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 118

[Close]

BLAST of MS014005 vs. ExPASy TrEMBL
Match: A0A7L7TCK2 (Ribosomal protein S12 OS=Myoporum bontioides OX=2292707 GN=rps12 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.8e-13
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 1   KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 44
           ++S VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 76  EHSSVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 118

[Close]

BLAST of MS014005 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 77.4 bits (189), Expect = 3.1e-15
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 1   KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 41
           ++S VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Sbjct: 76  EHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 115

[Close]

BLAST of MS014005 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 77.4 bits (189), Expect = 3.1e-15
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 1   KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 41
           ++S VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Sbjct: 76  EHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 115

[Close]

BLAST of MS014005 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 77.4 bits (189), Expect = 3.1e-15
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 1   KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 41
           ++S VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Sbjct: 76  EHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 115

[Close]

BLAST of MS014005 vs. TAIR 10
Match: AT2G07675.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 52.4 bits (124), Expect = 1.1e-07
Identity = 22/40 (55.00%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 1   KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 41
           ++S VL+RGGRVKD PGV+ H +RG  D +G+  R++GRS
Sbjct: 76  EHSTVLIRGGRVKDSPGVKSHCIRGVKDLMGIPGRRRGRS 115

[Close]

BLAST of MS014005 vs. TAIR 10
Match: ATMG00980.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 52.4 bits (124), Expect = 1.1e-07
Identity = 22/40 (55.00%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 1   KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 41
           ++S VL+RGGRVKD PGV+ H +RG  D +G+  R++GRS
Sbjct: 76  EHSTVLIRGGRVKDSPGVKSHCIRGVKDLMGIPGRRRGRS 115

The following BLAST results are available for this feature:

BLAST of MS014005 vs. NCBI nr


Match Name	E-value	Identity	Description
EYU43439.1	7.9e-13	93.02	hypothetical protein MIMGU_mgv11b016653mg, partial [Erythranthe guttata]	[more]
YP_010027249.1	7.9e-13	93.02	ribosomal protein S12 [Oreocharis cotinifolia] >YP_010027295.1 ribosomal protein...	[more]
AKJ77720.1	7.9e-13	93.02	ribosomal protein S12 [Perilla frutescens] >AKJ77770.1 ribosomal protein S12 [Pe...	[more]
QDB64107.1	7.9e-13	93.02	ribosomal protein S12 [Elsholtzia splendens]	[more]
YP_007379186.1	7.9e-13	93.02	ribosomal protein S12 [Tectona grandis] >YP_009365639.1 ribosomal protein S12 [D...	[more]

BLAST of MS014005 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1KXY0	1.8e-15	93.02	30S ribosomal protein S12, chloroplastic OS=Helianthus annuus OX=4232 GN=rps12-A...	[more]
Q332V3	1.8e-15	93.02	30S ribosomal protein S12, chloroplastic OS=Lactuca sativa OX=4236 GN=rps12-A PE...	[more]
Q0G9J5	1.8e-15	93.02	30S ribosomal protein S12, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=r...	[more]
P30060	3.3e-14	90.00	Plastid 30S ribosomal protein S12 OS=Epifagus virginiana OX=4177 GN=rps12-A PE=2...	[more]
A4QJV5	4.4e-14	92.50	30S ribosomal protein S12-A, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN...	[more]

BLAST of MS014005 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6M8PPW2	3.8e-13	93.02	30S ribosomal protein S12, chloroplastic OS=Streptocarpus ionanthus subsp. velut...	[more]
A0A6M5U745	3.8e-13	93.02	30S ribosomal protein S12, chloroplastic OS=Catalpa speciosa OX=155717 GN=rps12 ...	[more]
A0A7S6U9G2	3.8e-13	93.02	Ribosomal protein S12 OS=Catalpa fargesii OX=71605 GN=rps12 PE=4 SV=1	[more]
A0A2H4NSD4	3.8e-13	93.02	30S ribosomal protein S12, chloroplastic OS=Primulina eburnea OX=1245227 GN=rps1...	[more]
A0A7L7TCK2	3.8e-13	93.02	Ribosomal protein S12 OS=Myoporum bontioides OX=2292707 GN=rps12 PE=3 SV=1	[more]

BLAST of MS014005 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00065.1	3.1e-15	92.50	ribosomal protein S12A	[more]
ATCG01230.1	3.1e-15	92.50	ribosomal protein S12B	[more]
ATCG00905.1	3.1e-15	92.50	ribosomal protein S12C	[more]
AT2G07675.1	1.1e-07	55.00	Ribosomal protein S12/S23 family protein	[more]
ATMG00980.1	1.1e-07	55.00	Ribosomal protein S12/S23 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006032	Ribosomal protein S12/S23	PRINTS	PR01034	RIBOSOMALS12	coord: 2..19 score: 80.25 coord: 19..35 score: 64.3 coord: 35..43 score: 32.37
IPR006032	Ribosomal protein S12/S23	PFAM	PF00164	Ribosom_S12_S23	coord: 2..38 e-value: 7.0E-8 score: 32.1
IPR006032	Ribosomal protein S12/S23	PANTHER	PTHR11652	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	coord: 2..42
None	No IPR available	GENE3D	2.40.50.140		coord: 1..42 e-value: 2.5E-17 score: 64.7
None	No IPR available	PANTHER	PTHR11652:SF52	30S RIBOSOMAL PROTEIN S12-B	coord: 2..42
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 2..40

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS014005.1	MS014005.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome