Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTACGGCTTCAGAAGGCATTGTGGATGGATATTGGTGTTGACTACACAAACATCGCAGCCGTAGACCCAGAGAGAAGAGCAATCGAATCCGCAAACAGCGCAATTTCCAGACGGCACTTTCTTGAGCTTCAGCTTATGGGTGTGGTCTATGACGTGGCGGACCTCCTCGGGGAGCTGGGTGCAGAGTGGGTGCACGTCGAAGCCGCAGTCCTGGCACCGGTACAGCATGCCGCCGATGGGTCCGCGGCAGACGTCGCAGATCCGACGCTCCGTACTAGGCGCCAGAGTCAGGGGGTGGCTGTGGAGGAA mRNA sequence
GTACGGCTTCAGAAGGCATTGTGGATGGATATTGGTGTTGACTACACAAACATCGCAGCCGTAGACCCAGAGAGAAGAGCAATCGAATCCGCAAACAGCGCAATTTCCAGACGGCACTTTCTTGAGCTTCAGCTTATGGGTGTGGTCTATGACGTGGCGGACCTCCTCGGGGAGCTGGGTGCAGAGTGGGTGCACGTCGAAGCCGCAGTCCTGGCACCGGTACAGCATGCCGCCGATGGGTCCGCGGCAGACGTCGCAGATCCGACGCTCCGTACTAGGCGCCAGAGTCAGGGGGTGGCTGTGGAGGAA Coding sequence (CDS)
GTACGGCTTCAGAAGGCATTGTGGATGGATATTGGTGTTGACTACACAAACATCGCAGCCGTAGACCCAGAGAGAAGAGCAATCGAATCCGCAAACAGCGCAATTTCCAGACGGCACTTTCTTGAGCTTCAGCTTATGGGTGTGGTCTATGACGTGGCGGACCTCCTCGGGGAGCTGGGTGCAGAGTGGGTGCACGTCGAAGCCGCAGTCCTGGCACCGGTACAGCATGCCGCCGATGGGTCCGCGGCAGACGTCGCAGATCCGACGCTCCGTACTAGGCGCCAGAGTCAGGGGGTGGCTGTGGAGGAA Protein sequence
VRLQKALWMDIGVDYTNIAAVDPERRAIESANSAISRRHFLELQLMGVVYDVADLLGELGAEWVHVEAAVLAPVQHAADGSAADVADPTLRTRRQSQGVAVEE
Homology
BLAST of MS013997 vs. ExPASy TrEMBL
Match:
A0A0A0KXM9 (DNA polymerase, beta-like region OS=Cucumis sativus OX=3659 GN=Csa_4G297430 PE=4 SV=1)
HSP 1 Score: 86.7 bits (213), Expect = 6.4e-14
Identity = 49/103 (47.57%), Postives = 67/103 (65.05%), Query Frame = 0
Query: 1 VRLQKALWMDIGVDYTNIAAVDPERRAIESANSAISRRHFLELQLMGVVYDVADLLGELG 60 VRL+ A M+I D TN+AA++PERR I AN A +R E + M V +VA+LL ELG Sbjct: 52 VRLENAFGMNI--DSTNVAAINPERRTILFANRASARGELAEGEFMAAVDEVAELLRELG 111 Query: 61 AEWVHVEAAVLAPVQHAADGSAADVADPTLRTRRQSQGVAVEE 104 A+W+ +E AV+A V+HA DG AD+A + QS+ V VE+ Sbjct: 112 AKWMDIEVAVIAAVEHAVDGFTADIAAAMVHLVDQSKAVGVEK 152
The following BLAST results are available for this feature:
Match Name E-value Identity Description
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A0A0KXM9 6.4e-14 47.57 DNA polymerase, beta-like region OS=Cucumis sativus OX=3659 GN=Csa_4G297430 PE=4... [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
G T A C G G C T T C A G A A G G C A T T G T G G A T G G A T A T T G G T G T T G A C T A C A C A A A C A T C G C A G C C G T A G A C C C A G A G A G A A G A G C A A T C G A A T C C G C A A A C A G C G C A A T T T C C A G A C G G C A C T T T C T T G A G C T T C A G C T T A T G G G T G T G G T C T A T G A C G T G G C G G A C C T C C T C G G G G A G C T G G G T G C A G A G T G G G T G C A C G T C G A A G C C G C A G T C C T G G C A C C G G T A C A G C A T G C C G C C G A T G G G T C C G C G G C A G A C G T C G C A G A T C C G A C G C T C C G T A C T A G G C G C C A G A G T C A G G G G G T G G C T G T G G A G G A A 50 100 150 200 250 300 Score = Sequence mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 77..103
Relationships
The following mRNA feature(s) are a part of this gene:
Feature Name Unique Name Type
MS013997.1 MS013997.1 mRNA