MS013983 (gene) Bitter gourd (TR) v1

Overview
NameMS013983
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationscaffold607: 1415777 .. 1415965 (-)
RNA-Seq ExpressionMS013983
SyntenyMS013983
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTATAAATCTTATTCTTCATTTGATTATGGGGTTTTTCTTTATGAAAGGTAATTTTGAGGGATTGAACGCAAAGATTTTGAGTAGCTTGGGAATTGAATGCAAGTGTTGTGATGGGATTGGAGGTAAATGCTCTACTGAGTTCACTTCTTCTTGCTCTAATCTCCATTGTTCTCCTTGGAAACAATAT

mRNA sequence

TCTATAAATCTTATTCTTCATTTGATTATGGGGTTTTTCTTTATGAAAGGTAATTTTGAGGGATTGAACGCAAAGATTTTGAGTAGCTTGGGAATTGAATGCAAGTGTTGTGATGGGATTGGAGGTAAATGCTCTACTGAGTTCACTTCTTCTTGCTCTAATCTCCATTGTTCTCCTTGGAAACAATAT

Coding sequence (CDS)

TCTATAAATCTTATTCTTCATTTGATTATGGGGTTTTTCTTTATGAAAGGTAATTTTGAGGGATTGAACGCAAAGATTTTGAGTAGCTTGGGAATTGAATGCAAGTGTTGTGATGGGATTGGAGGTAAATGCTCTACTGAGTTCACTTCTTCTTGCTCTAATCTCCATTGTTCTCCTTGGAAACAATAT

Protein sequence

SINLILHLIMGFFFMKGNFEGLNAKILSSLGIECKCCDGIGGKCSTEFTSSCSNLHCSPWKQY
Homology
BLAST of MS013983 vs. NCBI nr
Match: KAG6595355.1 (hypothetical protein SDJN03_11908, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.4 bits (176), Expect = 1.6e-09
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 0

Query: 16 KGNFEGLNAKILSSLGIECKCCDG-IGGKCSTEF-TSSCSNLHCSPWKQY 64
          KG FE  ++ ++++LGIECKCCD  IGGKCST F  +SCSNL CSPWK Y
Sbjct: 47 KGGFEAYDSNMIATLGIECKCCDDEIGGKCSTHFAAASCSNLRCSPWKHY 96

BLAST of MS013983 vs. NCBI nr
Match: XP_003516905.1 (uncharacterized protein LOC100806570 [Glycine max] >XP_028235471.1 uncharacterized protein LOC114415124 [Glycine soja] >KAG5060225.1 hypothetical protein JHK87_001254 [Glycine soja] >KAG5068906.1 hypothetical protein JHK85_001283 [Glycine max] >KAG5088633.1 hypothetical protein JHK86_001245 [Glycine max] >KHN45716.1 hypothetical protein glysoja_048312 [Glycine soja] >KRH75737.1 hypothetical protein GLYMA_01G105400v4 [Glycine max])

HSP 1 Score: 64.7 bits (156), Expect = 3.3e-07
Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 0

Query: 24 AKILSSLGIECKCCDGIGGKCSTEFTSSCSNLHCSPWKQY 64
          +K  ++LG+ CKCCDG+GG C++ +T SCSNL CSPWK +
Sbjct: 43 SKFFATLGLVCKCCDGVGGACTSTWTESCSNLQCSPWKSH 82

BLAST of MS013983 vs. NCBI nr
Match: RDY12825.1 (hypothetical protein CR513_02326, partial [Mucuna pruriens])

HSP 1 Score: 64.3 bits (155), Expect = 4.3e-07
Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 0

Query: 24 AKILSSLGIECKCCDGIGGKCSTEFTSSCSNLHCSPWKQY 64
          +KI +SLG+ CKCCDG+GG C++ +T SC+NL C PWK +
Sbjct: 40 SKIFASLGVVCKCCDGVGGTCTSTWTESCNNLQCFPWKSH 79

BLAST of MS013983 vs. NCBI nr
Match: ACJ86172.1 (unknown [Medicago truncatula] >AES79375.1 hypothetical protein MTR_7g065130 [Medicago truncatula] >AFK38225.1 unknown [Medicago truncatula] >RHN46269.1 hypothetical protein MtrunA17_Chr7g0240411 [Medicago truncatula])

HSP 1 Score: 64.3 bits (155), Expect = 4.3e-07
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 0

Query: 24 AKILSSLGIECKCCDGIGGKCSTEFTSSCSNLHCSPWKQY 64
          +KI  +LG+ CKCCDGIGG C++ +T SC NL CSPWK +
Sbjct: 40 SKIFPTLGVVCKCCDGIGGTCTSTWTQSCKNLKCSPWKSH 79

BLAST of MS013983 vs. NCBI nr
Match: XP_027337837.1 (uncharacterized protein LOC113851528 [Abrus precatorius])

HSP 1 Score: 64.3 bits (155), Expect = 4.3e-07
Identity = 24/40 (60.00%), Postives = 32/40 (80.00%), Query Frame = 0

Query: 24 AKILSSLGIECKCCDGIGGKCSTEFTSSCSNLHCSPWKQY 64
          +KI ++LGI CKCCDG+GG C++ +T SCSNL C PWK +
Sbjct: 40 SKIFATLGIVCKCCDGLGGACTSTWTESCSNLQCFPWKSH 79

BLAST of MS013983 vs. ExPASy TrEMBL
Match: A0A0A0KXD1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303090 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.5e-13
Identity = 41/63 (65.08%), Postives = 50/63 (79.37%), Query Frame = 0

Query: 1  SINLILHLIMGFFFMKGNFEGLNAKILSSLGIECKCCDGIGGKCSTEFTSSCSNLHCSPW 60
          SI+ IL L  GF   KG ++   ++I +++GIECKCCD IGGKCSTEFT+SCSNLHCSPW
Sbjct: 35 SISPILKLQKGF---KGYYD---SQIFATMGIECKCCDEIGGKCSTEFTTSCSNLHCSPW 91

Query: 61 KQY 64
          KQY
Sbjct: 95 KQY 91

BLAST of MS013983 vs. ExPASy TrEMBL
Match: A0A0B2SG43 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_001081 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.6e-07
Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 0

Query: 24 AKILSSLGIECKCCDGIGGKCSTEFTSSCSNLHCSPWKQY 64
          +K  ++LG+ CKCCDG+GG C++ +T SCSNL CSPWK +
Sbjct: 43 SKFFATLGLVCKCCDGVGGACTSTWTESCSNLQCSPWKSH 82

BLAST of MS013983 vs. ExPASy TrEMBL
Match: I1J716 (Uncharacterized protein OS=Glycine max OX=3847 GN=100806570 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.6e-07
Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 0

Query: 24 AKILSSLGIECKCCDGIGGKCSTEFTSSCSNLHCSPWKQY 64
          +K  ++LG+ CKCCDG+GG C++ +T SCSNL CSPWK +
Sbjct: 43 SKFFATLGLVCKCCDGVGGACTSTWTESCSNLQCSPWKSH 82

BLAST of MS013983 vs. ExPASy TrEMBL
Match: B7FN39 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MTR_7g065130 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.1e-07
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 0

Query: 24 AKILSSLGIECKCCDGIGGKCSTEFTSSCSNLHCSPWKQY 64
          +KI  +LG+ CKCCDGIGG C++ +T SC NL CSPWK +
Sbjct: 40 SKIFPTLGVVCKCCDGIGGTCTSTWTQSCKNLKCSPWKSH 79

BLAST of MS013983 vs. ExPASy TrEMBL
Match: A0A371ICU6 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_02326 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.1e-07
Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 0

Query: 24 AKILSSLGIECKCCDGIGGKCSTEFTSSCSNLHCSPWKQY 64
          +KI +SLG+ CKCCDG+GG C++ +T SC+NL C PWK +
Sbjct: 40 SKIFASLGVVCKCCDGVGGTCTSTWTESCNNLQCFPWKSH 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6595355.11.6e-0964.00hypothetical protein SDJN03_11908, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_003516905.13.3e-0757.50uncharacterized protein LOC100806570 [Glycine max] >XP_028235471.1 uncharacteriz... [more]
RDY12825.14.3e-0757.50hypothetical protein CR513_02326, partial [Mucuna pruriens][more]
ACJ86172.14.3e-0760.00unknown [Medicago truncatula] >AES79375.1 hypothetical protein MTR_7g065130 [Med... [more]
XP_027337837.14.3e-0760.00uncharacterized protein LOC113851528 [Abrus precatorius][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KXD11.5e-1365.08Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303090 PE=4 SV=1[more]
A0A0B2SG431.6e-0757.50Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_001081 PE=4 SV=1[more]
I1J7161.6e-0757.50Uncharacterized protein OS=Glycine max OX=3847 GN=100806570 PE=4 SV=1[more]
B7FN392.1e-0760.00Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MTR_7g065130 PE=2 SV=1[more]
A0A371ICU62.1e-0757.50Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_02326 P... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37078FAMILY NOT NAMEDcoord: 23..62
NoneNo IPR availablePANTHERPTHR37078:SF6SUBFAMILY NOT NAMEDcoord: 23..62

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS013983.1MS013983.1mRNA