MS013977 (gene) Bitter gourd (TR) v1

Overview
NameMS013977
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein FAR1-RELATED SEQUENCE 4-like
Locationscaffold607: 1381460 .. 1381809 (+)
RNA-Seq ExpressionMS013977
SyntenyMS013977
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCTCTTTTCATTGCTTCTGTACACATCATATTAATATGAACTTGATGACAAAATTTAAAAACGAAGCGATTGAGCCACTATTTTATAAGGCCACGAAGGCATGTGGGGAGTCTTATTTCAACATCATATGGGCCGAACTTGGTGCATATACCCAGGTGTGAGGGAATATCTGGACGACATTGGCAAGGAACATTGGGCTCGTTGTTTCCAAATTGACTTGAGATACACACAGATGACCACTAATATCGCTAAGTCCATGAGTGTCCTATTCAAGCACGCGCGTAAGTTGTCAATGACTGCTTTACTTGACCATATCAGAGGTGTGTTACAGGAACGGTTCTACGAACGG

mRNA sequence

TCCTCTTTTCATTGCTTCTGTACACATCATATTAATATGAACTTGATGACAAAATTTAAAAACGAAGCGATTGAGCCACTATTTTATAAGGCCACGAAGGCATGTGGGGAGTCTTATTTCAACATCATATGGGCCGAACTTGGTGCATATACCGGTGTGAGGGAATATCTGGACGACATTGGCAAGGAACATTGGGCTCGTTGTTTCCAAATTGACTTGAGATACACACAGATGACCACTAATATCGCTAAGTCCATGAGTGTCCTATTCAAGCACGCGCGTAAGTTGTCAATGACTGCTTTACTTGACCATATCAGAGGTGTGTTACAGGAACGGTTCTACGAACGG

Coding sequence (CDS)

TCCTCTTTTCATTGCTTCTGTACACATCATATTAATATGAACTTGATGACAAAATTTAAAAACGAAGCGATTGAGCCACTATTTTATAAGGCCACGAAGGCATGTGGGGAGTCTTATTTCAACATCATATGGGCCGAACTTGGTGCATATACCGGTGTGAGGGAATATCTGGACGACATTGGCAAGGAACATTGGGCTCGTTGTTTCCAAATTGACTTGAGATACACACAGATGACCACTAATATCGCTAAGTCCATGAGTGTCCTATTCAAGCACGCGCGTAAGTTGTCAATGACTGCTTTACTTGACCATATCAGAGGTGTGTTACAGGAACGGTTCTACGAACGG

Protein sequence

SSFHCFCTHHINMNLMTKFKNEAIEPLFYKATKACGESYFNIIWAELGAYTGVREYLDDIGKEHWARCFQIDLRYTQMTTNIAKSMSVLFKHARKLSMTALLDHIRGVLQERFYER
Homology
[Close]
BLAST of MS013977 vs. NCBI nr
Match: XP_022151004.1 (uncharacterized protein LOC111019024 [Momordica charantia])

HSP 1 Score: 174.1 bits (440), Expect = 7.0e-40
Identity = 83/118 (70.34%), Postives = 96/118 (81.36%), Query Frame = 0 

Query: 1   SSFHCFCTHHINMNLMTKFKNE--AIEPLFYKATKACGESYFNIIWAELGAYTGVREYLD 60
           ++FHCFC  HI +NL+ KFKN+  A+E LF KA KA  ESYFN IWA+L AY GVREYLD
Sbjct: 34  AAFHCFCIQHIKVNLIAKFKNDAKAVEELFLKAAKAYRESYFNSIWAQLRAYPGVREYLD 93

Query: 61  DIGKEHWARCFQIDLRYTQMTTNIAKSMSVLFKHARKLSMTALLDHIRGVLQERFYER 117
           DIGKE WARCFQ  LRYTQMTTNIA+S++ LF+HARKL +TALLDHIRG LQ  FY+R
Sbjct: 94  DIGKERWARCFQTQLRYTQMTTNIAESVNALFRHARKLPVTALLDHIRGKLQNWFYDR 151

[Close]
BLAST of MS013977 vs. NCBI nr
Match: XP_022154610.1 (uncharacterized protein LOC111021833 [Momordica charantia])

HSP 1 Score: 172.6 bits (436), Expect = 2.1e-39
Identity = 82/118 (69.49%), Postives = 95/118 (80.51%), Query Frame = 0 

Query: 1   SSFHCFCTHHINMNLMTKFKNE--AIEPLFYKATKACGESYFNIIWAELGAYTGVREYLD 60
           ++FHCFC  HI +NL+ KFKN+  A+E LF KATKA  ESYFN IWA+L AY GVREYLD
Sbjct: 34  AAFHCFCIQHIKVNLIVKFKNDAKAVEELFLKATKAYRESYFNSIWAQLRAYPGVREYLD 93

Query: 61  DIGKEHWARCFQIDLRYTQMTTNIAKSMSVLFKHARKLSMTALLDHIRGVLQERFYER 117
           DIGKE WARCFQ  LRYTQMTTNIA+S++  F+HARKL +TALLDHIRG L   FY+R
Sbjct: 94  DIGKERWARCFQTQLRYTQMTTNIAESVNAFFRHARKLPVTALLDHIRGKLHNWFYDR 151

[Close]
BLAST of MS013977 vs. NCBI nr
Match: XP_022153146.1 (uncharacterized protein LOC111020715 [Momordica charantia])

HSP 1 Score: 172.6 bits (436), Expect = 2.1e-39
Identity = 82/118 (69.49%), Postives = 97/118 (82.20%), Query Frame = 0 

Query: 1   SSFHCFCTHHINMNLMTKFK--NEAIEPLFYKATKACGESYFNIIWAELGAYTGVREYLD 60
           ++FHCFC  HI MNL+ KFK   +A+E LF KA KA  ESYFN IWA+LGAY GVREYLD
Sbjct: 347 TAFHCFCIQHIKMNLLAKFKVDAKALEELFLKAAKAYRESYFNSIWAQLGAYPGVREYLD 406

Query: 61  DIGKEHWARCFQIDLRYTQMTTNIAKSMSVLFKHARKLSMTALLDHIRGVLQERFYER 117
           DIGKE WARCFQ +LRYTQMT+N A+S++ LF+HARKL +TALLDHIRG+LQ  FY+R
Sbjct: 407 DIGKERWARCFQTELRYTQMTSNNAESVNALFRHARKLPVTALLDHIRGLLQTWFYDR 464

[Close]
BLAST of MS013977 vs. NCBI nr
Match: XP_022154964.1 (protein FAR1-RELATED SEQUENCE 4-like [Momordica charantia])

HSP 1 Score: 172.2 bits (435), Expect = 2.7e-39
Identity = 78/116 (67.24%), Postives = 93/116 (80.17%), Query Frame = 0 

Query: 1   SSFHCFCTHHINMNLMTKFKNEAIEPLFYKATKACGESYFNIIWAELGAYTGVREYLDDI 60
           ++FHCFC HH+ MNL+ KFK   +E LF+KA KAC ESYFN  W +L A+ GVREY++ I
Sbjct: 119 TAFHCFCIHHLKMNLLAKFKTSELEELFFKAAKACRESYFNENWVQLCAHPGVREYVEXI 178

Query: 61  GKEHWARCFQIDLRYTQMTTNIAKSMSVLFKHARKLSMTALLDHIRGVLQERFYER 117
           GKE WARCFQ  LRY QMTTNIA+S++ LF+HARKL +TALLDHIRGVLQ  FYER
Sbjct: 179 GKERWARCFQTKLRYXQMTTNIAESVNALFRHARKLPVTALLDHIRGVLQRWFYER 234

[Close]
BLAST of MS013977 vs. NCBI nr
Match: XP_022131652.1 (protein FAR1-RELATED SEQUENCE 4-like [Momordica charantia])

HSP 1 Score: 171.4 bits (433), Expect = 4.6e-39
Identity = 79/115 (68.70%), Postives = 94/115 (81.74%), Query Frame = 0 

Query: 1   SSFHCFCTHHINMNLMTKFKNEAIEPLFYKATKACGESYFNIIWAELGAYTGVREYLDDI 60
           ++FHCFC HH+ MNL+ KFK  A+E LF+KA KA  ESYFN  W +L A+ GVREYL+ I
Sbjct: 348 TAFHCFCIHHLKMNLLAKFKTSALEALFFKAAKAFRESYFNENWVQLCAHPGVREYLEAI 407

Query: 61  GKEHWARCFQIDLRYTQMTTNIAKSMSVLFKHARKLSMTALLDHIRGVLQERFYE 116
           GKE WARCFQ  LRY+QMTTNIA+S++ LF+HARKLS+TALLDHIRGVLQ  FYE
Sbjct: 408 GKERWARCFQTKLRYSQMTTNIAESVNALFRHARKLSITALLDHIRGVLQRWFYE 462

[Close]
BLAST of MS013977 vs. ExPASy TrEMBL
Match: A0A6J1DBQ5 (uncharacterized protein LOC111019024 OS=Momordica charantia OX=3673 GN=LOC111019024 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.4e-40
Identity = 83/118 (70.34%), Postives = 96/118 (81.36%), Query Frame = 0 

Query: 1   SSFHCFCTHHINMNLMTKFKNE--AIEPLFYKATKACGESYFNIIWAELGAYTGVREYLD 60
           ++FHCFC  HI +NL+ KFKN+  A+E LF KA KA  ESYFN IWA+L AY GVREYLD
Sbjct: 34  AAFHCFCIQHIKVNLIAKFKNDAKAVEELFLKAAKAYRESYFNSIWAQLRAYPGVREYLD 93

Query: 61  DIGKEHWARCFQIDLRYTQMTTNIAKSMSVLFKHARKLSMTALLDHIRGVLQERFYER 117
           DIGKE WARCFQ  LRYTQMTTNIA+S++ LF+HARKL +TALLDHIRG LQ  FY+R
Sbjct: 94  DIGKERWARCFQTQLRYTQMTTNIAESVNALFRHARKLPVTALLDHIRGKLQNWFYDR 151

[Close]
BLAST of MS013977 vs. ExPASy TrEMBL
Match: A0A6J1DJT1 (uncharacterized protein LOC111020715 OS=Momordica charantia OX=3673 GN=LOC111020715 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 9.9e-40
Identity = 82/118 (69.49%), Postives = 97/118 (82.20%), Query Frame = 0 

Query: 1   SSFHCFCTHHINMNLMTKFK--NEAIEPLFYKATKACGESYFNIIWAELGAYTGVREYLD 60
           ++FHCFC  HI MNL+ KFK   +A+E LF KA KA  ESYFN IWA+LGAY GVREYLD
Sbjct: 347 TAFHCFCIQHIKMNLLAKFKVDAKALEELFLKAAKAYRESYFNSIWAQLGAYPGVREYLD 406

Query: 61  DIGKEHWARCFQIDLRYTQMTTNIAKSMSVLFKHARKLSMTALLDHIRGVLQERFYER 117
           DIGKE WARCFQ +LRYTQMT+N A+S++ LF+HARKL +TALLDHIRG+LQ  FY+R
Sbjct: 407 DIGKERWARCFQTELRYTQMTSNNAESVNALFRHARKLPVTALLDHIRGLLQTWFYDR 464

[Close]
BLAST of MS013977 vs. ExPASy TrEMBL
Match: A0A6J1DK35 (uncharacterized protein LOC111021833 OS=Momordica charantia OX=3673 GN=LOC111021833 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 9.9e-40
Identity = 82/118 (69.49%), Postives = 95/118 (80.51%), Query Frame = 0 

Query: 1   SSFHCFCTHHINMNLMTKFKNE--AIEPLFYKATKACGESYFNIIWAELGAYTGVREYLD 60
           ++FHCFC  HI +NL+ KFKN+  A+E LF KATKA  ESYFN IWA+L AY GVREYLD
Sbjct: 34  AAFHCFCIQHIKVNLIVKFKNDAKAVEELFLKATKAYRESYFNSIWAQLRAYPGVREYLD 93

Query: 61  DIGKEHWARCFQIDLRYTQMTTNIAKSMSVLFKHARKLSMTALLDHIRGVLQERFYER 117
           DIGKE WARCFQ  LRYTQMTTNIA+S++  F+HARKL +TALLDHIRG L   FY+R
Sbjct: 94  DIGKERWARCFQTQLRYTQMTTNIAESVNAFFRHARKLPVTALLDHIRGKLHNWFYDR 151

[Close]
BLAST of MS013977 vs. ExPASy TrEMBL
Match: A0A6J1DNT3 (protein FAR1-RELATED SEQUENCE 4-like OS=Momordica charantia OX=3673 GN=LOC111022108 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.3e-39
Identity = 78/116 (67.24%), Postives = 93/116 (80.17%), Query Frame = 0 

Query: 1   SSFHCFCTHHINMNLMTKFKNEAIEPLFYKATKACGESYFNIIWAELGAYTGVREYLDDI 60
           ++FHCFC HH+ MNL+ KFK   +E LF+KA KAC ESYFN  W +L A+ GVREY++ I
Sbjct: 119 TAFHCFCIHHLKMNLLAKFKTSELEELFFKAAKACRESYFNENWVQLCAHPGVREYVEXI 178

Query: 61  GKEHWARCFQIDLRYTQMTTNIAKSMSVLFKHARKLSMTALLDHIRGVLQERFYER 117
           GKE WARCFQ  LRY QMTTNIA+S++ LF+HARKL +TALLDHIRGVLQ  FYER
Sbjct: 179 GKERWARCFQTKLRYXQMTTNIAESVNALFRHARKLPVTALLDHIRGVLQRWFYER 234

[Close]
BLAST of MS013977 vs. ExPASy TrEMBL
Match: A0A6J1BRM2 (protein FAR1-RELATED SEQUENCE 4-like OS=Momordica charantia OX=3673 GN=LOC111004779 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.2e-39
Identity = 79/115 (68.70%), Postives = 94/115 (81.74%), Query Frame = 0 

Query: 1   SSFHCFCTHHINMNLMTKFKNEAIEPLFYKATKACGESYFNIIWAELGAYTGVREYLDDI 60
           ++FHCFC HH+ MNL+ KFK  A+E LF+KA KA  ESYFN  W +L A+ GVREYL+ I
Sbjct: 348 TAFHCFCIHHLKMNLLAKFKTSALEALFFKAAKAFRESYFNENWVQLCAHPGVREYLEAI 407

Query: 61  GKEHWARCFQIDLRYTQMTTNIAKSMSVLFKHARKLSMTALLDHIRGVLQERFYE 116
           GKE WARCFQ  LRY+QMTTNIA+S++ LF+HARKLS+TALLDHIRGVLQ  FYE
Sbjct: 408 GKERWARCFQTKLRYSQMTTNIAESVNALFRHARKLSITALLDHIRGVLQRWFYE 462

The following BLAST results are available for this feature:
BLAST of MS013977 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022151004.17.0e-4070.34uncharacterized protein LOC111019024 [Momordica charantia][more]
XP_022154610.12.1e-3969.49uncharacterized protein LOC111021833 [Momordica charantia][more]
XP_022153146.12.1e-3969.49uncharacterized protein LOC111020715 [Momordica charantia][more]
XP_022154964.12.7e-3967.24protein FAR1-RELATED SEQUENCE 4-like [Momordica charantia][more]
XP_022131652.14.6e-3968.70protein FAR1-RELATED SEQUENCE 4-like [Momordica charantia][more]
BLAST of MS013977 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS013977 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DBQ53.4e-4070.34uncharacterized protein LOC111019024 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A6J1DJT19.9e-4069.49uncharacterized protein LOC111020715 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A6J1DK359.9e-4069.49uncharacterized protein LOC111021833 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
A0A6J1DNT31.3e-3967.24protein FAR1-RELATED SEQUENCE 4-like OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1BRM22.2e-3968.70protein FAR1-RELATED SEQUENCE 4-like OS=Momordica charantia OX=3673 GN=LOC111004... [more]
BLAST of MS013977 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS013977.1MS013977.1mRNA