MS013935 (gene) Bitter gourd (TR) v1

Overview


Name	MS013935
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	30S ribosomal protein S31, chloroplastic
Location	scaffold607: 1061352 .. 1061929 (+)
RNA-Seq Expression	MS013935
Synteny	MS013935

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCACTTCCTTTCGGGCTTCTTCAAGCCGCTTCTCAATCTCCAACTCTTTCTCCTCGATTTTTCTCTTTCTCCAAATCCGAAACCCTAGGAACTTCTCTGCGTGCTTCTACTGCTTCTCTTGCGACCTCTGCAACTTCGTCTCCTTCTTCGGTTCCTGCTGGTATGCAATTCTTAAAACATTTCCAAGTGTTTGCGTCTCTGTTCAGTTTCTATCGCCTGAATTTTGTTCTGTGTTTGCTTTTTCAGTGTATTGTGGCAGAGGCGATAAGAAAACGGAGAAAGGAAAGCGGTTCAATCACTCTTACGGAAATGTAAGCATCTCTATATTCTCTATTCGTTTTCTTGATTTTCTTATCTGGTTTTGAGTTCTTTTGTTGTCTTGTATGAGTTCTGAGTTCTCTTTGGCATTTGGTTTTGAATTTTTTGGGGGGAAAAATGTTCAGGCAAGGCCTCGGGATAAGACGAAAGGGAGAGGGACTCCGAGAGTACCTACTCCGCCTGCTCCGCCTAGGAAAGATAAATTTGAGGATGATGAGAAAATTAAGATCGAGATTGACGAGTCTCTGTTCGCT

mRNA sequence

ATGGCTTCACTTCCTTTCGGGCTTCTTCAAGCCGCTTCTCAATCTCCAACTCTTTCTCCTCGATTTTTCTCTTTCTCCAAATCCGAAACCCTAGGAACTTCTCTGCGTGCTTCTACTGCTTCTCTTGCGACCTCTGCAACTTCGTCTCCTTCTTCGGTTCCTGCTGTGTATTGTGGCAGAGGCGATAAGAAAACGGAGAAAGGAAAGCGGTTCAATCACTCTTACGGAAATGCAAGGCCTCGGGATAAGACGAAAGGGAGAGGGACTCCGAGAGTACCTACTCCGCCTGCTCCGCCTAGGAAAGATAAATTTGAGGATGATGAGAAAATTAAGATCGAGATTGACGAGTCTCTGTTCGCT

Coding sequence (CDS)

ATGGCTTCACTTCCTTTCGGGCTTCTTCAAGCCGCTTCTCAATCTCCAACTCTTTCTCCTCGATTTTTCTCTTTCTCCAAATCCGAAACCCTAGGAACTTCTCTGCGTGCTTCTACTGCTTCTCTTGCGACCTCTGCAACTTCGTCTCCTTCTTCGGTTCCTGCTGTGTATTGTGGCAGAGGCGATAAGAAAACGGAGAAAGGAAAGCGGTTCAATCACTCTTACGGAAATGCAAGGCCTCGGGATAAGACGAAAGGGAGAGGGACTCCGAGAGTACCTACTCCGCCTGCTCCGCCTAGGAAAGATAAATTTGAGGATGATGAGAAAATTAAGATCGAGATTGACGAGTCTCTGTTCGCT

Protein sequence

MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPRKDKFEDDEKIKIEIDESLFA

Homology

[Close]

BLAST of MS013935 vs. NCBI nr
Match: XP_022151467.1 (30S ribosomal protein S31, chloroplastic [Momordica charantia])

HSP 1 Score: 226.1 bits (575), Expect = 1.6e-55
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGR 60
           MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGR
Sbjct: 52  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGR 111

Query: 61  GDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPRKDKFEDDEKIKIEIDESLFA 120
           GDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPRKDKFEDDEKIKIEID+SLFA
Sbjct: 112 GDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPRKDKFEDDEKIKIEIDDSLFA 171

[Close]

BLAST of MS013935 vs. NCBI nr
Match: XP_038882305.1 (30S ribosomal protein S31, chloroplastic [Benincasa hispida])

HSP 1 Score: 214.5 bits (545), Expect = 4.9e-52
Identity = 115/121 (95.04%), Postives = 118/121 (97.52%), Query Frame = 0


Query: 1   MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRA-STASLATSATSSPSSVPAVYCG 60
           MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRA STASLATS TSSPSS+PAVYCG
Sbjct: 1   MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASSTASLATSTTSSPSSIPAVYCG 60

Query: 61  RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPRKDKFEDDEKIKIEIDESLF 120
           RGDKKTEKGKRFN SYGNARPR+KTKGRGTPRVPTPP+PPRKDKFEDDEKIKIEIDESLF
Sbjct: 61  RGDKKTEKGKRFNRSYGNARPRNKTKGRGTPRVPTPPSPPRKDKFEDDEKIKIEIDESLF 120

[Close]

BLAST of MS013935 vs. NCBI nr
Match: XP_008449316.1 (PREDICTED: 30S ribosomal protein S31, chloroplastic [Cucumis melo] >KAA0045031.1 30S ribosomal protein S31 [Cucumis melo var. makuwa] >TYJ96295.1 30S ribosomal protein S31 [Cucumis melo var. makuwa])

HSP 1 Score: 203.4 bits (516), Expect = 1.1e-48
Identity = 107/121 (88.43%), Postives = 114/121 (94.21%), Query Frame = 0


Query: 1   MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRA-STASLATSATSSPSSVPAVYCG 60
           M SLPFGLLQA SQSP+L+P +FSFSKSETLGTSLRA STASLA S  SSPSS+PAVYCG
Sbjct: 1   MGSLPFGLLQAPSQSPSLNPHYFSFSKSETLGTSLRASSTASLAISTPSSPSSIPAVYCG 60

Query: 61  RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPRKDKFEDDEKIKIEIDESLF 120
           RGDKKTE+GKRFNHSYGNARPRDKTKGRGTPRVPTPP+PPRKDKF+DDEKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 120

[Close]

BLAST of MS013935 vs. NCBI nr
Match: XP_022931892.1 (30S ribosomal protein S31, chloroplastic-like [Cucurbita moschata] >XP_022966545.1 30S ribosomal protein S31, chloroplastic [Cucurbita maxima] >KAG6595386.1 30S ribosomal protein S31, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027394.1 30S ribosomal protein S31, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 200.3 bits (508), Expect = 9.5e-48
Identity = 106/120 (88.33%), Postives = 111/120 (92.50%), Query Frame = 0


Query: 1   MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGR 60
           MASLPFGLLQA  QSPTLSPR FSFSKSETLGTSLR ST    TSATSSPSS+PAVYCGR
Sbjct: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTST---GTSATSSPSSIPAVYCGR 60

Query: 61  GDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPRKDKFEDDEKIKIEIDESLFA 120
           GDKKTEKGKRF HS+GNARPRDKTKGRGTPRVPTPP+PPRKDKF+DDEKIKIEIDESLF+
Sbjct: 61  GDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFS 117

[Close]

BLAST of MS013935 vs. NCBI nr
Match: XP_023517799.1 (30S ribosomal protein S31, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 198.0 bits (502), Expect = 4.7e-47
Identity = 105/120 (87.50%), Postives = 110/120 (91.67%), Query Frame = 0


Query: 1   MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGR 60
           MASLPFGLLQA  QSPTLSPR FSFSKSETLGTSLR ST     SATSSPSS+PAVYCGR
Sbjct: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTST---GISATSSPSSIPAVYCGR 60

Query: 61  GDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPRKDKFEDDEKIKIEIDESLFA 120
           GDKKTEKGKRF HS+GNARPRDKTKGRGTPRVPTPP+PPRKDKF+DDEKIKIEIDESLF+
Sbjct: 61  GDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFS 117

[Close]

BLAST of MS013935 vs. ExPASy Swiss-Prot
Match: O80439 (30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS31 PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.7e-29
Identity = 70/97 (72.16%), Postives = 79/97 (81.44%), Query Frame = 0


Query: 24  SFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDK 83
           S S SET G SL   T   + S TSS SS+P VYCGRGD+KT KGKRFNHS+GNARPR+K
Sbjct: 22  SSSHSETAGVSLSCFTHQFSLS-TSSSSSIPLVYCGRGDRKTAKGKRFNHSFGNARPRNK 81

Query: 84  TKGRGTPRVPTPPAPPRKDKFEDDEKIKIEIDESLFA 121
           +KGRG  RVP PPAPPRKDKFE+DEKIKI+IDESLF+
Sbjct: 82  SKGRGPERVPVPPAPPRKDKFENDEKIKIDIDESLFS 117

[Close]

BLAST of MS013935 vs. ExPASy Swiss-Prot
Match: P47910 (30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 PE=1 SV=2)

HSP 1 Score: 79.0 bits (193), Expect = 4.2e-14
Identity = 51/98 (52.04%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 1  MASLPFGLLQAASQSPTLSPRFFSFSKSETL-GTSLRA-STASLATSATSSPSSVPAVYC 60
          MASL  G    A  S +     FSFS S+++ G SL +  T SL++S ++SP ++P +YC
Sbjct: 1  MASLLLGTPSMACHSVS-----FSFSHSQSVAGVSLSSPPTLSLSSSVSTSP-ALPLIYC 60

Query: 61 GRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPP 97
          GRGD+KT KGKRFNHS+GNARP++K KGRG P+ P  P
Sbjct: 61 GRGDRKTAKGKRFNHSFGNARPKNKNKGRGPPKAPIFP 92

[Close]

BLAST of MS013935 vs. ExPASy Swiss-Prot
Match: P47909 (30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0528100 PE=3 SV=2)

HSP 1 Score: 47.8 bits (112), Expect = 1.0e-04
Identity = 28/46 (60.87%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 55  AVYCGRGDKKTEKGKRFNHSYGNARP-RDKTKGRGTPRVPTPPAPP 100
           AV CGRGDKKT++GKRF  SYGNARP R+K   R   RV  P + P
Sbjct: 29  AVTCGRGDKKTKRGKRFKGSYGNARPKREKKIERIKDRVEVPRSTP 74

[Close]

BLAST of MS013935 vs. ExPASy TrEMBL
Match: A0A6J1DDL3 (30S ribosomal protein S31, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111019400 PE=3 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 7.8e-56
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGR 60
           MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGR
Sbjct: 52  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGR 111

Query: 61  GDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPRKDKFEDDEKIKIEIDESLFA 120
           GDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPRKDKFEDDEKIKIEID+SLFA
Sbjct: 112 GDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPRKDKFEDDEKIKIEIDDSLFA 171

[Close]

BLAST of MS013935 vs. ExPASy TrEMBL
Match: A0A5A7TU27 (30S ribosomal protein S31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00930 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 5.4e-49
Identity = 107/121 (88.43%), Postives = 114/121 (94.21%), Query Frame = 0


Query: 1   MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRA-STASLATSATSSPSSVPAVYCG 60
           M SLPFGLLQA SQSP+L+P +FSFSKSETLGTSLRA STASLA S  SSPSS+PAVYCG
Sbjct: 1   MGSLPFGLLQAPSQSPSLNPHYFSFSKSETLGTSLRASSTASLAISTPSSPSSIPAVYCG 60

Query: 61  RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPRKDKFEDDEKIKIEIDESLF 120
           RGDKKTE+GKRFNHSYGNARPRDKTKGRGTPRVPTPP+PPRKDKF+DDEKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 120

[Close]

BLAST of MS013935 vs. ExPASy TrEMBL
Match: A0A1S3BL51 (30S ribosomal protein S31, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491228 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 5.4e-49
Identity = 107/121 (88.43%), Postives = 114/121 (94.21%), Query Frame = 0


Query: 1   MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRA-STASLATSATSSPSSVPAVYCG 60
           M SLPFGLLQA SQSP+L+P +FSFSKSETLGTSLRA STASLA S  SSPSS+PAVYCG
Sbjct: 1   MGSLPFGLLQAPSQSPSLNPHYFSFSKSETLGTSLRASSTASLAISTPSSPSSIPAVYCG 60

Query: 61  RGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPRKDKFEDDEKIKIEIDESLF 120
           RGDKKTE+GKRFNHSYGNARPRDKTKGRGTPRVPTPP+PPRKDKF+DDEKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 120

[Close]

BLAST of MS013935 vs. ExPASy TrEMBL
Match: A0A6J1HRX4 (30S ribosomal protein S31, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466195 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.6e-48
Identity = 106/120 (88.33%), Postives = 111/120 (92.50%), Query Frame = 0


Query: 1   MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGR 60
           MASLPFGLLQA  QSPTLSPR FSFSKSETLGTSLR ST    TSATSSPSS+PAVYCGR
Sbjct: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTST---GTSATSSPSSIPAVYCGR 60

Query: 61  GDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPRKDKFEDDEKIKIEIDESLFA 120
           GDKKTEKGKRF HS+GNARPRDKTKGRGTPRVPTPP+PPRKDKF+DDEKIKIEIDESLF+
Sbjct: 61  GDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFS 117

[Close]

BLAST of MS013935 vs. ExPASy TrEMBL
Match: A0A6J1EV33 (30S ribosomal protein S31, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111438171 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.6e-48
Identity = 106/120 (88.33%), Postives = 111/120 (92.50%), Query Frame = 0


Query: 1   MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGR 60
           MASLPFGLLQA  QSPTLSPR FSFSKSETLGTSLR ST    TSATSSPSS+PAVYCGR
Sbjct: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTST---GTSATSSPSSIPAVYCGR 60

Query: 61  GDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPRKDKFEDDEKIKIEIDESLFA 120
           GDKKTEKGKRF HS+GNARPRDKTKGRGTPRVPTPP+PPRKDKF+DDEKIKIEIDESLF+
Sbjct: 61  GDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFS 117

[Close]

BLAST of MS013935 vs. TAIR 10
Match: AT2G38140.1 (plastid-specific ribosomal protein 4 )

HSP 1 Score: 129.4 bits (324), Expect = 1.9e-30
Identity = 70/97 (72.16%), Postives = 79/97 (81.44%), Query Frame = 0


Query: 24  SFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDK 83
           S S SET G SL   T   + S TSS SS+P VYCGRGD+KT KGKRFNHS+GNARPR+K
Sbjct: 22  SSSHSETAGVSLSCFTHQFSLS-TSSSSSIPLVYCGRGDRKTAKGKRFNHSFGNARPRNK 81

Query: 84  TKGRGTPRVPTPPAPPRKDKFEDDEKIKIEIDESLFA 121
           +KGRG  RVP PPAPPRKDKFE+DEKIKI+IDESLF+
Sbjct: 82  SKGRGPERVPVPPAPPRKDKFENDEKIKIDIDESLFS 117

[Close]

BLAST of MS013935 vs. TAIR 10
Match: AT2G21290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 6.9e-04
Identity = 27/52 (51.92%), Postives = 32/52 (61.54%), Query Frame = 0


Query: 28 SETLGTSLRASTASLATSATSSPSSVPAVYCGRGDKKTEKGKRFNHSYGNAR 80
          S  L  S R S+ S A +A   P+      CGRGDKKT+KGKRF  SYGN+R
Sbjct: 21 SAALNCSARYSSLSPACAA---PAVSEMDLCGRGDKKTKKGKRFKGSYGNSR 69

The following BLAST results are available for this feature:

BLAST of MS013935 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151467.1	1.6e-55	99.17	30S ribosomal protein S31, chloroplastic [Momordica charantia]	[more]
XP_038882305.1	4.9e-52	95.04	30S ribosomal protein S31, chloroplastic [Benincasa hispida]	[more]
XP_008449316.1	1.1e-48	88.43	PREDICTED: 30S ribosomal protein S31, chloroplastic [Cucumis melo] >KAA0045031.1...	[more]
XP_022931892.1	9.5e-48	88.33	30S ribosomal protein S31, chloroplastic-like [Cucurbita moschata] >XP_022966545...	[more]
XP_023517799.1	4.7e-47	87.50	30S ribosomal protein S31, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS013935 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80439	2.7e-29	72.16	30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS3...	[more]
P47910	4.2e-14	52.04	30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 P...	[more]
P47909	1.0e-04	60.87	30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=3994...	[more]

BLAST of MS013935 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DDL3	7.8e-56	99.17	30S ribosomal protein S31, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A5A7TU27	5.4e-49	88.43	30S ribosomal protein S31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BL51	5.4e-49	88.43	30S ribosomal protein S31, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491228...	[more]
A0A6J1HRX4	4.6e-48	88.33	30S ribosomal protein S31, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11146...	[more]
A0A6J1EV33	4.6e-48	88.33	30S ribosomal protein S31, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of MS013935 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38140.1	1.9e-30	72.16	plastid-specific ribosomal protein 4	[more]
AT2G21290.1	6.9e-04	51.92	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR030826	30S ribosomal protein	TIGRFAM	TIGR04560	TIGR04560	coord: 59..83 e-value: 1.4E-10 score: 38.9
IPR030826	30S ribosomal protein	PFAM	PF17067	RPS31	coord: 20..102 e-value: 3.2E-32 score: 110.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..109
None	No IPR available	PANTHER	PTHR34550:SF2	30S RIBOSOMAL PROTEIN S31, CHLOROPLASTIC	coord: 1..119
IPR044695	30S ribosomal protein S31, plant	PANTHER	PTHR34550	30S RIBOSOMAL PROTEIN S31, CHLOROPLASTIC	coord: 1..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS013935.1	MS013935.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005840	ribosome