MS013932 (gene) Bitter gourd (TR) v1

Overview


Name	MS013932
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	High mobility group B protein
Location	scaffold607: 1018589 .. 1019799 (-)
RNA-Seq Expression	MS013932
Synteny	MS013932

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGGGTCCAAGGGTAAGGGAACATCAAGGGTCTCGAAAGAAGCTTTGAAGCCAGTGGATGATAGGTAGCCTTTTGTTCATTGTTCCACCACGAATTTCATATCTTTCTGGACTGATAATATAAGACCTTGTAATTGTTTAGTTATGAATATCTGTGATCCATATGATTAGTATTGGTAGCTTGCTGACATCTATTTTCAGTGTATCGAATTTCCATCAAGTTTACGAGTTCTGTTGATGTCTAATAATATCTACATACTTGATGGTGTATACAGTGGTTACAGGAATTTTGTAGTGACGGATCATAAATATCTCTATTATTTTCAGAAAGGTTGGGAAGCGAAAGGCTGCCATTAAGGCTGACAAGAATAGCAAACGACCAACAAAGAAGGATTTGAAAGCCAAGAAAGATCCCAACAAACCTAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCCTGTTCGTATTTGGTTTTTACTGTCATTTCAGGCTGAAAACTACCTTTTCGATTTCTTTTAGGAAGAAAATCTTCTTACTTGTTTAAATTTATGTAACAGAGAGGAGTTCAGAAAAGAGTTCAAAAGGGACAATCCTCATGTGAAGGCAGTATCTGCAGTACGTAACCAGTGAAATTGGCCTAAAGATGCCCACAACTTGATATGCAAATATAGAGTAAATTATTGACATTTTCCCCACATTTTCAGGTTGGAAAAGCTGGAGGAGAGAAGTGGAAATCCTTGAGTCATGCTGTAAGTATCGTCATGTATTACATAAAAATTGAAGCAGCCTTAAAATGATTGCCCTCATTTCCTTTTTCCTCCATGTATAATGTTGATGAATGGAAGTCTGTTTCCAGAGGTTTTATGTTAAATTGGTGCTAAATCTTGGAACTTTATCTTGCCTTTGGATTAGGGTCACTGTCAATGATCTCGCATTGAATATCACATTTGATTTTTTTCTTTTCTTTTACCTGGACTCGGTCTCGGTCTTTCTTCTGCCTCTGTAATGGCATTTTCTTACTATCAATGTTGGGCAATATTCCATTTTAACTATACTTCTTTATTCTTGATCGGTTCTTAAGTTTATTTATTGGGTCTTCTCATTGAAAACTAACTTACTGGATTAAAAAGGAAAAAGCACCCTACGAAGCCAAGGCGGCTAAGAAGAAGGCTGAATATGAAAAGCTTATGAGGGCATATGACAGCAAGAAG

mRNA sequence

ATGAAGGGGTCCAAGGGTAAGGGAACATCAAGGGTCTCGAAAGAAGCTTTGAAGCCAGTGGATGATAGAAAGGTTGGGAAGCGAAAGGCTGCCATTAAGGCTGACAAGAATAGCAAACGACCAACAAAGAAGGATTTGAAAGCCAAGAAAGATCCCAACAAACCTAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCCTAGAGGAGTTCAGAAAAGAGTTCAAAAGGGACAATCCTCATGTGAAGGCAGTATCTGCAGTTGGAAAAGCTGGAGGAGAGAAGTGGAAATCCTTGAGTCATGCTGAAAAAGCACCCTACGAAGCCAAGGCGGCTAAGAAGAAGGCTGAATATGAAAAGCTTATGAGGGCATATGACAGCAAGAAG

Coding sequence (CDS)

ATGAAGGGGTCCAAGGGTAAGGGAACATCAAGGGTCTCGAAAGAAGCTTTGAAGCCAGTGGATGATAGAAAGGTTGGGAAGCGAAAGGCTGCCATTAAGGCTGACAAGAATAGCAAACGACCAACAAAGAAGGATTTGAAAGCCAAGAAAGATCCCAACAAACCTAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCCTAGAGGAGTTCAGAAAAGAGTTCAAAAGGGACAATCCTCATGTGAAGGCAGTATCTGCAGTTGGAAAAGCTGGAGGAGAGAAGTGGAAATCCTTGAGTCATGCTGAAAAAGCACCCTACGAAGCCAAGGCGGCTAAGAAGAAGGCTGAATATGAAAAGCTTATGAGGGCATATGACAGCAAGAAG

Protein sequence

MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLMRAYDSKK

Homology

[Close]

BLAST of MS013932 vs. NCBI nr
Match: XP_022151579.1 (high mobility group B protein 1 [Momordica charantia] >XP_022151580.1 high mobility group B protein 1 [Momordica charantia])

HSP 1 Score: 236.9 bits (603), Expect = 9.7e-59
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120
           AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM
Sbjct: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120

Query: 121 RAYDSKK 128
           RAYDSKK
Sbjct: 121 RAYDSKK 127

[Close]

BLAST of MS013932 vs. NCBI nr
Match: XP_008449957.1 (PREDICTED: high mobility group B protein 1 [Cucumis melo] >XP_008449965.1 PREDICTED: high mobility group B protein 1 [Cucumis melo])

HSP 1 Score: 224.9 bits (572), Expect = 3.8e-55
Identity = 119/127 (93.70%), Postives = 125/127 (98.43%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKA +KADK +KRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120
           AFFVFLEEFRKE+KR+NP+VKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAK+KAEYEKLM
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120

Query: 121 RAYDSKK 128
           RAYDSKK
Sbjct: 121 RAYDSKK 127

[Close]

BLAST of MS013932 vs. NCBI nr
Match: KAA0031875.1 (high mobility group B protein 1 [Cucumis melo var. makuwa] >TYK09515.1 high mobility group B protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 224.9 bits (572), Expect = 3.8e-55
Identity = 119/127 (93.70%), Postives = 125/127 (98.43%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKA +KADK +KRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120
           AFFVFLEEFRKE+KR+NP+VKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAK+KAEYEKLM
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120

Query: 121 RAYDSKK 128
           RAYDSKK
Sbjct: 121 RAYDSKK 127

[Close]

BLAST of MS013932 vs. NCBI nr
Match: XP_011653690.1 (high mobility group B protein 1 [Cucumis sativus] >XP_011653691.1 high mobility group B protein 1 [Cucumis sativus] >XP_031740703.1 high mobility group B protein 1 [Cucumis sativus] >KGN54377.1 hypothetical protein Csa_017866 [Cucumis sativus])

HSP 1 Score: 223.8 bits (569), Expect = 8.5e-55
Identity = 119/127 (93.70%), Postives = 124/127 (97.64%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKA +KADK  KRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGIKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120
           AFFVFLEEFRKE+KR+NP+VKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAK+KAEYEKLM
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120

Query: 121 RAYDSKK 128
           RAYDSKK
Sbjct: 121 RAYDSKK 127

[Close]

BLAST of MS013932 vs. NCBI nr
Match: XP_038883904.1 (high mobility group B protein 1 [Benincasa hispida] >XP_038883905.1 high mobility group B protein 1 [Benincasa hispida] >XP_038883906.1 high mobility group B protein 1 [Benincasa hispida])

HSP 1 Score: 221.1 bits (562), Expect = 5.5e-54
Identity = 117/127 (92.13%), Postives = 124/127 (97.64%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKAA+KADK   RPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAVKADKGVNRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120
           AFFVFLEEFRKE+KR+NP+VKAVSAVGKAGGEKWKSLSHAEKAPYEA+AAK+KAEYEKLM
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEARAAKRKAEYEKLM 120

Query: 121 RAYDSKK 128
           +AYDSKK
Sbjct: 121 KAYDSKK 127

[Close]

BLAST of MS013932 vs. ExPASy Swiss-Prot
Match: O49595 (High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.3e-39
Identity = 91/124 (73.39%), Postives = 106/124 (85.48%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60
           MK +KGK   + +KEALKPVDDRKVGKRKA   A+K +KR T+K+ KAKKDPNKPKR PS
Sbjct: 1   MKTAKGKDKVKTTKEALKPVDDRKVGKRKA--PAEKPTKRETRKEKKAKKDPNKPKRAPS 60

Query: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120
           AFFVFLE+FR  FK++NP+VKAVSAVGKAGG+KWKS+S AEKAPYE KAAK+KAEYEK M
Sbjct: 61  AFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQM 120

Query: 121 RAYD 125
            AY+
Sbjct: 121 DAYN 122

[Close]

BLAST of MS013932 vs. ExPASy Swiss-Prot
Match: P26585 (HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-24
Identity = 73/127 (57.48%), Postives = 88/127 (69.29%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60
           MKG K K  S+ +   L       V K+ AA KA    ++P  K  KA KDPNKPKRPPS
Sbjct: 1   MKGGKSKTESKRADPKL------AVNKKGAATKA----RKPAGKG-KAAKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120
           AFFVF+EEFRK F +++P  KAVSAVGKA G KWK++S AEKAPY AK+ K+K EYEK M
Sbjct: 61  AFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNM 116

Query: 121 RAYDSKK 128
           RAY+ K+
Sbjct: 121 RAYNKKQ 116

[Close]

BLAST of MS013932 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 5.2e-23
Identity = 64/105 (60.95%), Postives = 78/105 (74.29%), Query Frame = 0


Query: 24  KVGKRKAAIKADKNS--KRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVK 83
           K  K KA  ++ K S  K+P K    A KDPNKPKRP SAFFVF+E+FR  +K ++P  K
Sbjct: 2   KGAKSKAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNK 61

Query: 84  AVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLMRAYDSK 127
           +V+AVGKAGGEKWKSLS +EKAPY AKA K+K EYEK M+AY+ K
Sbjct: 62  SVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKK 106

[Close]

BLAST of MS013932 vs. ExPASy Swiss-Prot
Match: P40620 (HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 6.8e-23
Identity = 68/126 (53.97%), Postives = 88/126 (69.84%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60
           MKG K KG S+ ++  L       V K+ AA  A K  K+P K   K  KDPNKPKRPPS
Sbjct: 1   MKGGKSKGESKKAETKL------AVNKKGAA--ATKGGKKPAKG--KEPKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120
           AFFVF+ +FR+++K+D+P+ K+V+AVGKA GE+WKSLS  EKAPY  +A KKK EYE  +
Sbjct: 61  AFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITL 116

Query: 121 RAYDSK 127
           +AY+ K
Sbjct: 121 QAYNKK 116

[Close]

BLAST of MS013932 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.2e-22
Identity = 64/126 (50.79%), Postives = 83/126 (65.87%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60
           MKG+K K  +R SK ++     +  G+ KA                 A KDPNKPKRP S
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRGKA-----------------AAKDPNKPKRPAS 60

Query: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120
           AFFVF+E+FR+ FK++NP  K+V+ VGKA G+KWKSLS +EKAPY AKA K+K EYEK +
Sbjct: 61  AFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNI 109

Query: 121 RAYDSK 127
           +AY+ K
Sbjct: 121 KAYNKK 109

[Close]

BLAST of MS013932 vs. ExPASy TrEMBL
Match: A0A6J1DBK9 (high mobility group B protein 1 OS=Momordica charantia OX=3673 GN=LOC111019485 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 4.7e-59
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120
           AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM
Sbjct: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120

Query: 121 RAYDSKK 128
           RAYDSKK
Sbjct: 121 RAYDSKK 127

[Close]

BLAST of MS013932 vs. ExPASy TrEMBL
Match: A0A1S3BML2 (high mobility group B protein 1 OS=Cucumis melo OX=3656 GN=LOC103491684 PE=3 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.8e-55
Identity = 119/127 (93.70%), Postives = 125/127 (98.43%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKA +KADK +KRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120
           AFFVFLEEFRKE+KR+NP+VKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAK+KAEYEKLM
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120

Query: 121 RAYDSKK 128
           RAYDSKK
Sbjct: 121 RAYDSKK 127

[Close]

BLAST of MS013932 vs. ExPASy TrEMBL
Match: A0A5A7SRU9 (High mobility group B protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold994G00070 PE=3 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.8e-55
Identity = 119/127 (93.70%), Postives = 125/127 (98.43%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKA +KADK +KRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120
           AFFVFLEEFRKE+KR+NP+VKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAK+KAEYEKLM
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120

Query: 121 RAYDSKK 128
           RAYDSKK
Sbjct: 121 RAYDSKK 127

[Close]

BLAST of MS013932 vs. ExPASy TrEMBL
Match: A0A0A0L1B2 (HMG box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G309150 PE=3 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 4.1e-55
Identity = 119/127 (93.70%), Postives = 124/127 (97.64%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60
           MKGSKGKGTSRVSKEALKPVDDRKVGKRKA +KADK  KRPTKKDLKAKKDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGIKRPTKKDLKAKKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120
           AFFVFLEEFRKE+KR+NP+VKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAK+KAEYEKLM
Sbjct: 61  AFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKRKAEYEKLM 120

Query: 121 RAYDSKK 128
           RAYDSKK
Sbjct: 121 RAYDSKK 127

[Close]

BLAST of MS013932 vs. ExPASy TrEMBL
Match: A0A6J1ISM4 (high mobility group B protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111478326 PE=3 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 3.6e-51
Identity = 112/127 (88.19%), Postives = 122/127 (96.06%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60
           MKG KGKGTSRVSKEALKPVDDRKVGKRKAAIKADK  KRPTKK+LKA KDPNKPKRPPS
Sbjct: 1   MKGPKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKGIKRPTKKELKALKDPNKPKRPPS 60

Query: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120
           AFFVFLEEFR+E+KR+NP+VKAVSAVGKAGG++W+SL+H EKAPYEAKAAK+KAEYEKLM
Sbjct: 61  AFFVFLEEFRQEYKRENPNVKAVSAVGKAGGQRWQSLTHDEKAPYEAKAAKRKAEYEKLM 120

Query: 121 RAYDSKK 128
           RAYDSKK
Sbjct: 121 RAYDSKK 127

[Close]

BLAST of MS013932 vs. TAIR 10
Match: AT3G51880.1 (high mobility group B1 )

HSP 1 Score: 162.9 bits (411), Expect = 1.7e-40
Identity = 91/124 (73.39%), Postives = 106/124 (85.48%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60
           MK +KGK   + +KEALKPVDDRKVGKRKA   A+K +KR T+K+ KAKKDPNKPKR PS
Sbjct: 1   MKTAKGKDKVKTTKEALKPVDDRKVGKRKA--PAEKPTKRETRKEKKAKKDPNKPKRAPS 60

Query: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120
           AFFVFLE+FR  FK++NP+VKAVSAVGKAGG+KWKS+S AEKAPYE KAAK+KAEYEK M
Sbjct: 61  AFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQM 120

Query: 121 RAYD 125
            AY+
Sbjct: 121 DAYN 122

[Close]

BLAST of MS013932 vs. TAIR 10
Match: AT3G51880.2 (high mobility group B1 )

HSP 1 Score: 162.9 bits (411), Expect = 1.7e-40
Identity = 91/124 (73.39%), Postives = 106/124 (85.48%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60
           MK +KGK   + +KEALKPVDDRKVGKRKA   A+K +KR T+K+ KAKKDPNKPKR PS
Sbjct: 1   MKTAKGKDKVKTTKEALKPVDDRKVGKRKA--PAEKPTKRETRKEKKAKKDPNKPKRAPS 60

Query: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120
           AFFVFLE+FR  FK++NP+VKAVSAVGKAGG+KWKS+S AEKAPYE KAAK+KAEYEK M
Sbjct: 61  AFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQM 120

Query: 121 RAYD 125
            AY+
Sbjct: 121 DAYN 122

[Close]

BLAST of MS013932 vs. TAIR 10
Match: AT3G51880.3 (high mobility group B1 )

HSP 1 Score: 162.9 bits (411), Expect = 1.7e-40
Identity = 91/124 (73.39%), Postives = 106/124 (85.48%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60
           MK +KGK   + +KEALKPVDDRKVGKRKA   A+K +KR T+K+ KAKKDPNKPKR PS
Sbjct: 1   MKTAKGKDKVKTTKEALKPVDDRKVGKRKA--PAEKPTKRETRKEKKAKKDPNKPKRAPS 60

Query: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120
           AFFVFLE+FR  FK++NP+VKAVSAVGKAGG+KWKS+S AEKAPYE KAAK+KAEYEK M
Sbjct: 61  AFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQM 120

Query: 121 RAYD 125
            AY+
Sbjct: 121 DAYN 122

[Close]

BLAST of MS013932 vs. TAIR 10
Match: AT3G51880.4 (high mobility group B1 )

HSP 1 Score: 162.9 bits (411), Expect = 1.7e-40
Identity = 91/124 (73.39%), Postives = 106/124 (85.48%), Query Frame = 0


Query: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPS 60
           MK +KGK   + +KEALKPVDDRKVGKRKA   A+K +KR T+K+ KAKKDPNKPKR PS
Sbjct: 1   MKTAKGKDKVKTTKEALKPVDDRKVGKRKA--PAEKPTKRETRKEKKAKKDPNKPKRAPS 60

Query: 61  AFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLM 120
           AFFVFLE+FR  FK++NP+VKAVSAVGKAGG+KWKS+S AEKAPYE KAAK+KAEYEK M
Sbjct: 61  AFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQM 120

Query: 121 RAYD 125
            AY+
Sbjct: 121 DAYN 122

[Close]

BLAST of MS013932 vs. TAIR 10
Match: AT1G20696.1 (high mobility group B3 )

HSP 1 Score: 108.6 bits (270), Expect = 3.7e-24
Identity = 64/105 (60.95%), Postives = 78/105 (74.29%), Query Frame = 0


Query: 24  KVGKRKAAIKADKNS--KRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVK 83
           K  K KA  ++ K S  K+P K    A KDPNKPKRP SAFFVF+E+FR  +K ++P  K
Sbjct: 2   KGAKSKAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNK 61

Query: 84  AVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLMRAYDSK 127
           +V+AVGKAGGEKWKSLS +EKAPY AKA K+K EYEK M+AY+ K
Sbjct: 62  SVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKK 106

The following BLAST results are available for this feature:

BLAST of MS013932 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151579.1	9.7e-59	100.00	high mobility group B protein 1 [Momordica charantia] >XP_022151580.1 high mobil...	[more]
XP_008449957.1	3.8e-55	93.70	PREDICTED: high mobility group B protein 1 [Cucumis melo] >XP_008449965.1 PREDIC...	[more]
KAA0031875.1	3.8e-55	93.70	high mobility group B protein 1 [Cucumis melo var. makuwa] >TYK09515.1 high mobi...	[more]
XP_011653690.1	8.5e-55	93.70	high mobility group B protein 1 [Cucumis sativus] >XP_011653691.1 high mobility ...	[more]
XP_038883904.1	5.5e-54	92.13	high mobility group B protein 1 [Benincasa hispida] >XP_038883905.1 high mobilit...	[more]

BLAST of MS013932 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49595	2.3e-39	73.39	High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV...	[more]
P26585	1.2e-24	57.48	HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1	[more]
P93047	5.2e-23	60.95	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]
P40620	6.8e-23	53.97	HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1	[more]
O49596	1.2e-22	50.79	High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV...	[more]

BLAST of MS013932 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DBK9	4.7e-59	100.00	high mobility group B protein 1 OS=Momordica charantia OX=3673 GN=LOC111019485 P...	[more]
A0A1S3BML2	1.8e-55	93.70	high mobility group B protein 1 OS=Cucumis melo OX=3656 GN=LOC103491684 PE=3 SV=...	[more]
A0A5A7SRU9	1.8e-55	93.70	High mobility group B protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A0A0L1B2	4.1e-55	93.70	HMG box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G309150 PE=...	[more]
A0A6J1ISM4	3.6e-51	88.19	high mobility group B protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111478326...	[more]

BLAST of MS013932 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51880.1	1.7e-40	73.39	high mobility group B1	[more]
AT3G51880.2	1.7e-40	73.39	high mobility group B1	[more]
AT3G51880.3	1.7e-40	73.39	high mobility group B1	[more]
AT3G51880.4	1.7e-40	73.39	high mobility group B1	[more]
AT1G20696.1	3.7e-24	60.95	high mobility group B3	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 54..125 e-value: 2.5E-24 score: 96.8
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 55..123 e-value: 8.1E-24 score: 83.8
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 55..124 score: 19.465244
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 38..127 e-value: 2.2E-25 score: 90.9
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 41..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59
None	No IPR available	PANTHER	PTHR46261:SF1	HIGH MOBILITY GROUP B PROTEIN 1	coord: 1..127
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 55..101 e-value: 1.04988E-8 score: 46.467
IPR031061	High mobility group protein HMGB, plant	PANTHER	PTHR46261	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 1..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS013932.1	MS013932.1	mRNA