MS013861 (gene) Bitter gourd (TR) v1

Overview


Name	MS013861
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RING-H2 finger protein ATL74-like
Location	scaffold607: 347583 .. 348053 (-)
RNA-Seq Expression	MS013861
Synteny	MS013861

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTCGTCGGAATCTCTGCAGCCAATTCCATACCCAACCAAAATGCTCCAGATCAGCCGCCGCTTCCCGGCGCTGCCGCCCTCGCCGCCGTCGAACACGAGCGAGAAGAATCTCGACTTCAACGTGGTGATAGTTCTGGCGGCTCTGCTCTGCGCTCTCGTCGGCGCACTCGTCGTCAACTCCATTCTCCGGTGCTTGGCGCGGCGGCGATGGGGCGGACTCAGCCGGGAGTCGGCCGCTCTGGCGGGGGTTAAGAGAAGAGGCGAATTGGAGGAGATTCCGGTGGCGGTGTTTGCGGGGGCGGCGGAAGGGAGAATCAGAGGTACGGAATGCGCGATTTGTTTGGGGGAATTTGAAATTGGCGACGATTTGAGGATTTTGCCCAATTGCAGCCATGGATTCCATGTGAATTGTATCGATCATTGGCTCGTCTCCCACTCTTCGTGCCCTAATTGCCGGCATTCTCTGCTG

mRNA sequence

TTCTCGTCGGAATCTCTGCAGCCAATTCCATACCCAACCAAAATGCTCCAGATCAGCCGCCGCTTCCCGGCGCTGCCGCCCTCGCCGCCGTCGAACACGAGCGAGAAGAATCTCGACTTCAACGTGGTGATAGTTCTGGCGGCTCTGCTCTGCGCTCTCGTCGGCGCACTCGTCGTCAACTCCATTCTCCGGTGCTTGGCGCGGCGGCGATGGGGCGGACTCAGCCGGGAGTCGGCCGCTCTGGCGGGGGTTAAGAGAAGAGGCGAATTGGAGGAGATTCCGGTGGCGGTGTTTGCGGGGGCGGCGGAAGGGAGAATCAGAGGTACGGAATGCGCGATTTGTTTGGGGGAATTTGAAATTGGCGACGATTTGAGGATTTTGCCCAATTGCAGCCATGGATTCCATGTGAATTGTATCGATCATTGGCTCGTCTCCCACTCTTCGTGCCCTAATTGCCGGCATTCTCTGCTG

Coding sequence (CDS)

TTCTCGTCGGAATCTCTGCAGCCAATTCCATACCCAACCAAAATGCTCCAGATCAGCCGCCGCTTCCCGGCGCTGCCGCCCTCGCCGCCGTCGAACACGAGCGAGAAGAATCTCGACTTCAACGTGGTGATAGTTCTGGCGGCTCTGCTCTGCGCTCTCGTCGGCGCACTCGTCGTCAACTCCATTCTCCGGTGCTTGGCGCGGCGGCGATGGGGCGGACTCAGCCGGGAGTCGGCCGCTCTGGCGGGGGTTAAGAGAAGAGGCGAATTGGAGGAGATTCCGGTGGCGGTGTTTGCGGGGGCGGCGGAAGGGAGAATCAGAGGTACGGAATGCGCGATTTGTTTGGGGGAATTTGAAATTGGCGACGATTTGAGGATTTTGCCCAATTGCAGCCATGGATTCCATGTGAATTGTATCGATCATTGGCTCGTCTCCCACTCTTCGTGCCCTAATTGCCGGCATTCTCTGCTG

Protein sequence

FSSESLQPIPYPTKMLQISRRFPALPPSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGLSRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAICLGEFEIGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSLL

Homology

[Close]

BLAST of MS013861 vs. NCBI nr
Match: XP_022144089.1 (RING-H2 finger protein ATL74-like [Momordica charantia])

HSP 1 Score: 280.4 bits (716), Expect = 9.4e-72
Identity = 138/143 (96.50%), Postives = 139/143 (97.20%), Query Frame = 0


Query: 15  MLQISRRFPALPPSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGL 74
           M QISRRFPALPPSPPSNTSEKNLDFNVVIVLAALLCALVGAL VNSILRC+ARRRWG L
Sbjct: 1   MFQISRRFPALPPSPPSNTSEKNLDFNVVIVLAALLCALVGALAVNSILRCVARRRWGEL 60

Query: 75  SRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAICLGEFEIGDDLRILPNCSHGF 134
           SRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAICLGEFEIGDDLRILPNCSHGF
Sbjct: 61  SRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAICLGEFEIGDDLRILPNCSHGF 120

Query: 135 HVNCIDHWLVSHSSCPNCRHSLL 158
           HVNCIDHW VSHSSCPNCRHSLL
Sbjct: 121 HVNCIDHWFVSHSSCPNCRHSLL 143

[Close]

BLAST of MS013861 vs. NCBI nr
Match: KAA0025403.1 (RING-H2 finger protein ATL74 [Cucumis melo var. makuwa])

HSP 1 Score: 169.5 bits (428), Expect = 2.3e-38
Identity = 91/142 (64.08%), Postives = 103/142 (72.54%), Query Frame = 0


Query: 15  MLQISRRFPALPPSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGL 74
           M +I R F A PP  P+ T   NL  N+VI LAALL AL+GALVVNSI+RC+ RR W   
Sbjct: 1   MFKIHRHFTAAPPPFPAET---NLGNNMVIGLAALLYALIGALVVNSIIRCVWRRWWRAA 60

Query: 75  SRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAICLGEFEIGDDLRILPNCSHGF 134
           +R          R ELEEIPVAVF G    R+RGTECAICLGEFE G+DLRILP C+HGF
Sbjct: 61  AR--------VERQELEEIPVAVFEGEGRMRMRGTECAICLGEFESGEDLRILPRCNHGF 120

Query: 135 HVNCIDHWLVSHSSCPNCRHSL 157
           HV+CID WLVSHSSCPNCRHS+
Sbjct: 121 HVHCIDAWLVSHSSCPNCRHSV 131

[Close]

BLAST of MS013861 vs. NCBI nr
Match: XP_011653722.1 (RING-H2 finger protein ATL74 isoform X1 [Cucumis sativus] >KGN54449.1 hypothetical protein Csa_012932 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 3.1e-38
Identity = 95/157 (60.51%), Postives = 114/157 (72.61%), Query Frame = 0


Query: 2   SSESLQPIPY--PTKMLQISRRFPALPPSPPSNTSEKNLDFNVVIVLAALLCALVGALVV 61
           SS+++ P  +  PTK +Q         P PP+  +   LD N+VI+LAALL ALVGALV+
Sbjct: 4   SSQTISPNTHHTPTKYVQ--------GPPPPAFPAHTTLDNNMVILLAALLYALVGALVM 63

Query: 62  NSILRCLARRRWGGLSRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAICLGEFE 121
           NSILRC+ RR W      SAA A V+R+ ELEEIPVAV+ G    +IRGTECAICLGEFE
Sbjct: 64  NSILRCIWRRWW------SAAAARVERQ-ELEEIPVAVYEGEGRMKIRGTECAICLGEFE 123

Query: 122 IGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSL 157
            G+ LRI+P C+HGFHV+CID WLVSHSSCPNCRHSL
Sbjct: 124 SGEGLRIMPKCNHGFHVHCIDAWLVSHSSCPNCRHSL 145

[Close]

BLAST of MS013861 vs. NCBI nr
Match: XP_008463261.1 (PREDICTED: RING-H2 finger protein ATL74 [Cucumis melo] >TYK09770.1 RING-H2 finger protein ATL74 [Cucumis melo var. makuwa])

HSP 1 Score: 167.9 bits (424), Expect = 6.8e-38
Identity = 90/142 (63.38%), Postives = 102/142 (71.83%), Query Frame = 0


Query: 15  MLQISRRFPALPPSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGL 74
           M +I R F A PP  P+ T   NL  N+VI LAALL AL+GALVVNSI+RC+ RR W   
Sbjct: 1   MFKIHRHFTAAPPPFPAET---NLGNNMVIGLAALLYALIGALVVNSIIRCVWRRWWSAA 60

Query: 75  SRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAICLGEFEIGDDLRILPNCSHGF 134
           +R          R ELE IPVAVF G    R+RGTECAICLGEFE G+DLRILP C+HGF
Sbjct: 61  AR--------VERQELEAIPVAVFEGEGRMRMRGTECAICLGEFESGEDLRILPQCNHGF 120

Query: 135 HVNCIDHWLVSHSSCPNCRHSL 157
           HV+CID WLVSHSSCPNCRHS+
Sbjct: 121 HVHCIDAWLVSHSSCPNCRHSV 131

[Close]

BLAST of MS013861 vs. NCBI nr
Match: XP_014497284.1 (RING-H2 finger protein ATL74 [Vigna radiata var. radiata])

HSP 1 Score: 151.0 bits (380), Expect = 8.6e-33
Identity = 86/145 (59.31%), Postives = 104/145 (71.72%), Query Frame = 0


Query: 24  ALPPSPPSNT-----SEKNLDFNVVIVLAALLCALVGALVVNSILRCLAR--RRWGGLSR 83
           ++PPS  +NT     S+ N D N+VI+LAALLCAL+ AL +NSI RC  R  RR+G  + 
Sbjct: 12  SMPPSNGNNTHDTFISDANFDTNMVIILAALLCALICALGLNSIARCALRCGRRFGDETE 71

Query: 84  ESAAL----AGVKRRGELEEIPVAVFAGAAEGRIRGTECAICLGEFEIGDDLRILPNCSH 143
           E AA      G+KRR EL  IPVAV+ GA+   I  TEC ICLGEFE GD +R+LP C+H
Sbjct: 72  EQAAARLAGTGLKRR-ELSRIPVAVY-GASGETIPATECPICLGEFEKGDRVRMLPKCNH 131

Query: 144 GFHVNCIDHWLVSHSSCPNCRHSLL 158
           GFHV+CID WL+SHSSCPNCRHSLL
Sbjct: 132 GFHVHCIDTWLLSHSSCPNCRHSLL 154

[Close]

BLAST of MS013861 vs. ExPASy Swiss-Prot
Match: Q9LZV8 (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.0e-32
Identity = 77/130 (59.23%), Postives = 97/130 (74.62%), Query Frame = 0


Query: 33  TSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGLSRESAA-----LAGVKRR 92
           T + N D N+VI+LAALLCAL+ AL +NSILRC A R   GLS  +AA      AG+K+R
Sbjct: 25  TRDMNFDANMVIILAALLCALILALGLNSILRC-AMRCGFGLSSSAAAGTVADRAGLKKR 84

Query: 93  GELEEIPVAVFAGAAEGRIRGTECAICLGEFEIGDDLRILPNCSHGFHVNCIDHWLVSHS 152
            EL++ PVA + G+ E +I  TECAICLGEF  G+ +R+LP C+H FH++CID WLVSHS
Sbjct: 85  -ELKKFPVAEY-GSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHS 144

Query: 153 SCPNCRHSLL 158
           SCPNCRHSL+
Sbjct: 145 SCPNCRHSLI 151

[Close]

BLAST of MS013861 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.3e-26
Identity = 68/145 (46.90%), Postives = 93/145 (64.14%), Query Frame = 0


Query: 27  PSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLAR--RRWGGLSRES------ 86
           P P    ++   D N+VI+LAALLCAL+ AL +NS LRC+ R  RR+    + S      
Sbjct: 18  PKPKGGINDTYFDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNAN 77

Query: 87  ------AALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAICLGEFEIGDDLRILPNCSH 146
                 AA  G+K++  L++IPV ++ G+    ++ TEC ICLG+FE G+ +R+LP C+H
Sbjct: 78  ANLGRLAAATGLKKQA-LKQIPVGLY-GSGIIDMKATECLICLGDFEDGEKVRVLPKCNH 137

Query: 147 GFHVNCIDHWLVSHSSCPNCRHSLL 158
           GFHV CID WL+S SSCP CR SLL
Sbjct: 138 GFHVRCIDTWLLSRSSCPTCRQSLL 160

[Close]

BLAST of MS013861 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.7e-26
Identity = 66/139 (47.48%), Postives = 94/139 (67.63%), Query Frame = 0


Query: 25  LPPSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLAR--RRW----GGLSRES 84
           L  S  +N +  ++D ++VI+LAALLCAL+ AL +NS+LRC+ R  RR+      +   +
Sbjct: 24  LGDSVSNNKNIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTNA 83

Query: 85  AALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAICLGEFEIGDDLRILPNCSHGFHVNC 144
               G+K+R  L+ IPV  +  + E +++ TEC ICLG+F  G+ +R+LP C+HGFHV C
Sbjct: 84  NVAKGIKKRA-LKVIPVDSY--SPELKMKATECLICLGDFVEGETVRVLPKCNHGFHVKC 143

Query: 145 IDHWLVSHSSCPNCRHSLL 158
           ID WL+SHSSCP CR SLL
Sbjct: 144 IDTWLLSHSSCPTCRQSLL 159

[Close]

BLAST of MS013861 vs. ExPASy Swiss-Prot
Match: Q9LM69 (RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.9e-23
Identity = 61/144 (42.36%), Postives = 86/144 (59.72%), Query Frame = 0


Query: 27  PSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGLSRE--------- 86
           PSP  + S   L+ ++V++LAALLCAL+  L + ++ RC+  RR    +R          
Sbjct: 15  PSPAIDNSTAALNSDLVVILAALLCALICVLGLIAVSRCVWLRRLAAGNRTVSGSQTQSP 74

Query: 87  ----SAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAICLGEFEIGDDLRILPNCSHG 146
               +AA  G+K++  L+ +P   F+  +    +  ECAICL EF  GD+LR+LP C HG
Sbjct: 75  QPPVAAANKGLKKK-VLQSLPKLTFSPESPESEKFAECAICLAEFSAGDELRVLPQCGHG 134

Query: 147 FHVNCIDHWLVSHSSCPNCRHSLL 158
           FHV CID WL SHSSCP+CR  L+
Sbjct: 135 FHVACIDTWLGSHSSCPSCRQILV 157

[Close]

BLAST of MS013861 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 5.5e-22
Identity = 60/138 (43.48%), Postives = 76/138 (55.07%), Query Frame = 0


Query: 27  PSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLAR-------RRWGGLSRESA 86
           P+P     + N D NVV+VL+ LLCALV +L +NSI+RC  R          G       
Sbjct: 41  PAPSPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVPSEAGGDNYPVRL 100

Query: 87  ALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAICLGEFEIGDDLRILPNCSHGFHVNCI 146
              GVKR+  L+      ++         TECAICL EF   + +++LP C HGFHV CI
Sbjct: 101 TNTGVKRKA-LKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCI 160

Query: 147 DHWLVSHSSCPNCRHSLL 158
           D WL SHSSCP CRH L+
Sbjct: 161 DKWLSSHSSCPTCRHCLI 177

[Close]

BLAST of MS013861 vs. ExPASy TrEMBL
Match: A0A6J1CR99 (RING-H2 finger protein ATL74-like OS=Momordica charantia OX=3673 GN=LOC111013867 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 4.6e-72
Identity = 138/143 (96.50%), Postives = 139/143 (97.20%), Query Frame = 0


Query: 15  MLQISRRFPALPPSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGL 74
           M QISRRFPALPPSPPSNTSEKNLDFNVVIVLAALLCALVGAL VNSILRC+ARRRWG L
Sbjct: 1   MFQISRRFPALPPSPPSNTSEKNLDFNVVIVLAALLCALVGALAVNSILRCVARRRWGEL 60

Query: 75  SRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAICLGEFEIGDDLRILPNCSHGF 134
           SRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAICLGEFEIGDDLRILPNCSHGF
Sbjct: 61  SRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAICLGEFEIGDDLRILPNCSHGF 120

Query: 135 HVNCIDHWLVSHSSCPNCRHSLL 158
           HVNCIDHW VSHSSCPNCRHSLL
Sbjct: 121 HVNCIDHWFVSHSSCPNCRHSLL 143

[Close]

BLAST of MS013861 vs. ExPASy TrEMBL
Match: A0A5A7SL64 (RING-H2 finger protein ATL74 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1220G00400 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.1e-38
Identity = 91/142 (64.08%), Postives = 103/142 (72.54%), Query Frame = 0


Query: 15  MLQISRRFPALPPSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGL 74
           M +I R F A PP  P+ T   NL  N+VI LAALL AL+GALVVNSI+RC+ RR W   
Sbjct: 1   MFKIHRHFTAAPPPFPAET---NLGNNMVIGLAALLYALIGALVVNSIIRCVWRRWWRAA 60

Query: 75  SRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAICLGEFEIGDDLRILPNCSHGF 134
           +R          R ELEEIPVAVF G    R+RGTECAICLGEFE G+DLRILP C+HGF
Sbjct: 61  AR--------VERQELEEIPVAVFEGEGRMRMRGTECAICLGEFESGEDLRILPRCNHGF 120

Query: 135 HVNCIDHWLVSHSSCPNCRHSL 157
           HV+CID WLVSHSSCPNCRHS+
Sbjct: 121 HVHCIDAWLVSHSSCPNCRHSV 131

[Close]

BLAST of MS013861 vs. ExPASy TrEMBL
Match: A0A0A0L057 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G333870 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.5e-38
Identity = 95/157 (60.51%), Postives = 114/157 (72.61%), Query Frame = 0


Query: 2   SSESLQPIPY--PTKMLQISRRFPALPPSPPSNTSEKNLDFNVVIVLAALLCALVGALVV 61
           SS+++ P  +  PTK +Q         P PP+  +   LD N+VI+LAALL ALVGALV+
Sbjct: 4   SSQTISPNTHHTPTKYVQ--------GPPPPAFPAHTTLDNNMVILLAALLYALVGALVM 63

Query: 62  NSILRCLARRRWGGLSRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAICLGEFE 121
           NSILRC+ RR W      SAA A V+R+ ELEEIPVAV+ G    +IRGTECAICLGEFE
Sbjct: 64  NSILRCIWRRWW------SAAAARVERQ-ELEEIPVAVYEGEGRMKIRGTECAICLGEFE 123

Query: 122 IGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSL 157
            G+ LRI+P C+HGFHV+CID WLVSHSSCPNCRHSL
Sbjct: 124 SGEGLRIMPKCNHGFHVHCIDAWLVSHSSCPNCRHSL 145

[Close]

BLAST of MS013861 vs. ExPASy TrEMBL
Match: A0A5D3CEJ5 (RING-H2 finger protein ATL74 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00540 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 3.3e-38
Identity = 90/142 (63.38%), Postives = 102/142 (71.83%), Query Frame = 0


Query: 15  MLQISRRFPALPPSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGL 74
           M +I R F A PP  P+ T   NL  N+VI LAALL AL+GALVVNSI+RC+ RR W   
Sbjct: 1   MFKIHRHFTAAPPPFPAET---NLGNNMVIGLAALLYALIGALVVNSIIRCVWRRWWSAA 60

Query: 75  SRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAICLGEFEIGDDLRILPNCSHGF 134
           +R          R ELE IPVAVF G    R+RGTECAICLGEFE G+DLRILP C+HGF
Sbjct: 61  AR--------VERQELEAIPVAVFEGEGRMRMRGTECAICLGEFESGEDLRILPQCNHGF 120

Query: 135 HVNCIDHWLVSHSSCPNCRHSL 157
           HV+CID WLVSHSSCPNCRHS+
Sbjct: 121 HVHCIDAWLVSHSSCPNCRHSV 131

[Close]

BLAST of MS013861 vs. ExPASy TrEMBL
Match: A0A1S3CKD5 (RING-H2 finger protein ATL74 OS=Cucumis melo OX=3656 GN=LOC103501464 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 3.3e-38
Identity = 90/142 (63.38%), Postives = 102/142 (71.83%), Query Frame = 0


Query: 15  MLQISRRFPALPPSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGL 74
           M +I R F A PP  P+ T   NL  N+VI LAALL AL+GALVVNSI+RC+ RR W   
Sbjct: 1   MFKIHRHFTAAPPPFPAET---NLGNNMVIGLAALLYALIGALVVNSIIRCVWRRWWSAA 60

Query: 75  SRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAICLGEFEIGDDLRILPNCSHGF 134
           +R          R ELE IPVAVF G    R+RGTECAICLGEFE G+DLRILP C+HGF
Sbjct: 61  AR--------VERQELEAIPVAVFEGEGRMRMRGTECAICLGEFESGEDLRILPQCNHGF 120

Query: 135 HVNCIDHWLVSHSSCPNCRHSL 157
           HV+CID WLVSHSSCPNCRHS+
Sbjct: 121 HVHCIDAWLVSHSSCPNCRHSV 131

[Close]

BLAST of MS013861 vs. TAIR 10
Match: AT5G01880.1 (RING/U-box superfamily protein )

HSP 1 Score: 140.2 bits (352), Expect = 1.4e-33
Identity = 77/130 (59.23%), Postives = 97/130 (74.62%), Query Frame = 0


Query: 33  TSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGLSRESAA-----LAGVKRR 92
           T + N D N+VI+LAALLCAL+ AL +NSILRC A R   GLS  +AA      AG+K+R
Sbjct: 25  TRDMNFDANMVIILAALLCALILALGLNSILRC-AMRCGFGLSSSAAAGTVADRAGLKKR 84

Query: 93  GELEEIPVAVFAGAAEGRIRGTECAICLGEFEIGDDLRILPNCSHGFHVNCIDHWLVSHS 152
            EL++ PVA + G+ E +I  TECAICLGEF  G+ +R+LP C+H FH++CID WLVSHS
Sbjct: 85  -ELKKFPVAEY-GSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHS 144

Query: 153 SCPNCRHSLL 158
           SCPNCRHSL+
Sbjct: 145 SCPNCRHSLI 151

[Close]

BLAST of MS013861 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein )

HSP 1 Score: 120.9 bits (302), Expect = 8.9e-28
Identity = 68/145 (46.90%), Postives = 93/145 (64.14%), Query Frame = 0


Query: 27  PSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLAR--RRWGGLSRES------ 86
           P P    ++   D N+VI+LAALLCAL+ AL +NS LRC+ R  RR+    + S      
Sbjct: 18  PKPKGGINDTYFDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNAN 77

Query: 87  ------AALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAICLGEFEIGDDLRILPNCSH 146
                 AA  G+K++  L++IPV ++ G+    ++ TEC ICLG+FE G+ +R+LP C+H
Sbjct: 78  ANLGRLAAATGLKKQA-LKQIPVGLY-GSGIIDMKATECLICLGDFEDGEKVRVLPKCNH 137

Query: 147 GFHVNCIDHWLVSHSSCPNCRHSLL 158
           GFHV CID WL+S SSCP CR SLL
Sbjct: 138 GFHVRCIDTWLLSRSSCPTCRQSLL 160

[Close]

BLAST of MS013861 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 119.4 bits (298), Expect = 2.6e-27
Identity = 66/139 (47.48%), Postives = 94/139 (67.63%), Query Frame = 0


Query: 25  LPPSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLAR--RRW----GGLSRES 84
           L  S  +N +  ++D ++VI+LAALLCAL+ AL +NS+LRC+ R  RR+      +   +
Sbjct: 24  LGDSVSNNKNIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTNA 83

Query: 85  AALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAICLGEFEIGDDLRILPNCSHGFHVNC 144
               G+K+R  L+ IPV  +  + E +++ TEC ICLG+F  G+ +R+LP C+HGFHV C
Sbjct: 84  NVAKGIKKRA-LKVIPVDSY--SPELKMKATECLICLGDFVEGETVRVLPKCNHGFHVKC 143

Query: 145 IDHWLVSHSSCPNCRHSLL 158
           ID WL+SHSSCP CR SLL
Sbjct: 144 IDTWLLSHSSCPTCRQSLL 159

[Close]

BLAST of MS013861 vs. TAIR 10
Match: AT1G20823.1 (RING/U-box superfamily protein )

HSP 1 Score: 109.8 bits (273), Expect = 2.1e-24
Identity = 61/144 (42.36%), Postives = 86/144 (59.72%), Query Frame = 0


Query: 27  PSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGLSRE--------- 86
           PSP  + S   L+ ++V++LAALLCAL+  L + ++ RC+  RR    +R          
Sbjct: 15  PSPAIDNSTAALNSDLVVILAALLCALICVLGLIAVSRCVWLRRLAAGNRTVSGSQTQSP 74

Query: 87  ----SAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAICLGEFEIGDDLRILPNCSHG 146
               +AA  G+K++  L+ +P   F+  +    +  ECAICL EF  GD+LR+LP C HG
Sbjct: 75  QPPVAAANKGLKKK-VLQSLPKLTFSPESPESEKFAECAICLAEFSAGDELRVLPQCGHG 134

Query: 147 FHVNCIDHWLVSHSSCPNCRHSLL 158
           FHV CID WL SHSSCP+CR  L+
Sbjct: 135 FHVACIDTWLGSHSSCPSCRQILV 157

[Close]

BLAST of MS013861 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein )

HSP 1 Score: 105.5 bits (262), Expect = 3.9e-23
Identity = 60/138 (43.48%), Postives = 76/138 (55.07%), Query Frame = 0


Query: 27  PSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLAR-------RRWGGLSRESA 86
           P+P     + N D NVV+VL+ LLCALV +L +NSI+RC  R          G       
Sbjct: 41  PAPSPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVPSEAGGDNYPVRL 100

Query: 87  ALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAICLGEFEIGDDLRILPNCSHGFHVNCI 146
              GVKR+  L+      ++         TECAICL EF   + +++LP C HGFHV CI
Sbjct: 101 TNTGVKRKA-LKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCI 160

Query: 147 DHWLVSHSSCPNCRHSLL 158
           D WL SHSSCP CRH L+
Sbjct: 161 DKWLSSHSSCPTCRHCLI 177

The following BLAST results are available for this feature:

BLAST of MS013861 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144089.1	9.4e-72	96.50	RING-H2 finger protein ATL74-like [Momordica charantia]	[more]
KAA0025403.1	2.3e-38	64.08	RING-H2 finger protein ATL74 [Cucumis melo var. makuwa]	[more]
XP_011653722.1	3.1e-38	60.51	RING-H2 finger protein ATL74 isoform X1 [Cucumis sativus] >KGN54449.1 hypothetic...	[more]
XP_008463261.1	6.8e-38	63.38	PREDICTED: RING-H2 finger protein ATL74 [Cucumis melo] >TYK09770.1 RING-H2 finge...	[more]
XP_014497284.1	8.6e-33	59.31	RING-H2 finger protein ATL74 [Vigna radiata var. radiata]	[more]

BLAST of MS013861 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZV8	2.0e-32	59.23	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1	[more]
Q9SG96	1.3e-26	46.90	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1	[more]
Q9FLC6	3.7e-26	47.48	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1	[more]
Q9LM69	2.9e-23	42.36	RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1	[more]
Q6NQG7	5.5e-22	43.48	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1	[more]

BLAST of MS013861 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CR99	4.6e-72	96.50	RING-H2 finger protein ATL74-like OS=Momordica charantia OX=3673 GN=LOC111013867...	[more]
A0A5A7SL64	1.1e-38	64.08	RING-H2 finger protein ATL74 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A0A0L057	1.5e-38	60.51	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G333870 P...	[more]
A0A5D3CEJ5	3.3e-38	63.38	RING-H2 finger protein ATL74 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3CKD5	3.3e-38	63.38	RING-H2 finger protein ATL74 OS=Cucumis melo OX=3656 GN=LOC103501464 PE=4 SV=1	[more]

BLAST of MS013861 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01880.1	1.4e-33	59.23	RING/U-box superfamily protein	[more]
AT3G10910.1	8.9e-28	46.90	RING/U-box superfamily protein	[more]
AT5G05280.1	2.6e-27	47.48	RING/U-box superfamily protein	[more]
AT1G20823.1	2.1e-24	42.36	RING/U-box superfamily protein	[more]
AT1G49230.1	3.9e-23	43.48	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 111..152 e-value: 3.7E-6 score: 36.5
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 110..153 e-value: 4.1E-14 score: 52.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 111..153 score: 11.722122
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 86..157 e-value: 5.1E-20 score: 72.5
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 31..157
None	No IPR available	PANTHER	PTHR45798:SF44	RING-H2 FINGER PROTEIN ATL74	coord: 31..157
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 110..153 e-value: 2.93508E-18 score: 71.5641
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 105..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS013861.1	MS013861.1	mRNA