MS013844 (gene) Bitter gourd (TR) v1

Overview


Name	MS013844
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1
Location	scaffold607: 205388 .. 205709 (-)
RNA-Seq Expression	MS013844
Synteny	MS013844

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATGGATATGGATGGAAGCGGTTCTTCCTCTAGGAATTATTGCTGGGATGCTCTGTATAATGGGGAATGCTCAATATCAAATCCACAAAGCCGCCCATGGCCGGGTATTTTACTTTTTACTCGACTTTATTTTACTGGATCCCCCTTTTTCTTTTTTCTCTGGGTTTCGATCAACGATCTGTAATCAAATTTCCGGTATTGGGTTTCTGTTGTTCGTTGTTTGTGCAGCCGAAGCACATCGGTAATGATATGTGGGACGTTGCCATGGAACGCAGGGACAAGAAACTCATGGAGAATTTCTCCGCCGCTTCCCATAGT

mRNA sequence

ATGGGATGGATATGGATGGAAGCGGTTCTTCCTCTAGGAATTATTGCTGGGATGCTCTGTATAATGGGGAATGCTCAATATCAAATCCACAAAGCCGCCCATGGCCGGCCGAAGCACATCGGTAATGATATGTGGGACGTTGCCATGGAACGCAGGGACAAGAAACTCATGGAGAATTTCTCCGCCGCTTCCCATAGT

Coding sequence (CDS)

ATGGGATGGATATGGATGGAAGCGGTTCTTCCTCTAGGAATTATTGCTGGGATGCTCTGTATAATGGGGAATGCTCAATATCAAATCCACAAAGCCGCCCATGGCCGGCCGAAGCACATCGGTAATGATATGTGGGACGTTGCCATGGAACGCAGGGACAAGAAACTCATGGAGAATTTCTCCGCCGCTTCCCATAGT

Protein sequence

MGWIWMEAVLPLGIIAGMLCIMGNAQYQIHKAAHGRPKHIGNDMWDVAMERRDKKLMENFSAASHS

Homology

[Close]

BLAST of MS013844 vs. NCBI nr
Match: XP_022156255.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Momordica charantia] >XP_022156256.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Momordica charantia] >XP_022156257.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Momordica charantia])

HSP 1 Score: 142.5 bits (358), Expect = 1.3e-30
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MGWIWMEAVLPLGIIAGMLCIMGNAQYQIHKAAHGRPKHIGNDMWDVAMERRDKKLMENF 60
          MGWIWMEAVLPLGIIAGMLCIMGNAQYQIHKAAHGRPKHIGNDMWDVAMERRDKKLMENF
Sbjct: 1  MGWIWMEAVLPLGIIAGMLCIMGNAQYQIHKAAHGRPKHIGNDMWDVAMERRDKKLMENF 60

Query: 61 SAASHS 67
          SAASHS
Sbjct: 61 SAASHS 66

[Close]

BLAST of MS013844 vs. NCBI nr
Match: XP_038881013.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Benincasa hispida])

HSP 1 Score: 131.0 bits (328), Expect = 3.9e-27
Identity = 60/65 (92.31%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 2  GWIWMEAVLPLGIIAGMLCIMGNAQYQIHKAAHGRPKHIGNDMWDVAMERRDKKLMENFS 61
          GW WMEA LPLGIIAGMLCIMGNAQY IHKAAHGRPKHIGNDMWDVAMERRDKKL+EN S
Sbjct: 3  GWRWMEAALPLGIIAGMLCIMGNAQYHIHKAAHGRPKHIGNDMWDVAMERRDKKLVENLS 62

Query: 62 AASHS 67
          AASHS
Sbjct: 63 AASHS 67

[Close]

BLAST of MS013844 vs. NCBI nr
Match: XP_022966508.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Cucurbita maxima] >XP_022966509.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Cucurbita maxima] >KAG7027518.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.0 bits (328), Expect = 3.9e-27
Identity = 60/65 (92.31%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 1  MGWIWMEAVLPLGIIAGMLCIMGNAQYQIHKAAHGRPKHIGNDMWDVAMERRDKKLMENF 60
          M W WMEA LPLGIIAGMLCIMGNAQY IHKAAHGRPKHIGNDMWDVAMERRDKKL+ENF
Sbjct: 1  MAWRWMEAALPLGIIAGMLCIMGNAQYHIHKAAHGRPKHIGNDMWDVAMERRDKKLVENF 60

Query: 61 SAASH 66
          SAASH
Sbjct: 61 SAASH 65

[Close]

BLAST of MS013844 vs. NCBI nr
Match: XP_022950918.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Cucurbita moschata] >XP_022950920.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Cucurbita moschata] >XP_023543068.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Cucurbita pepo subsp. pepo] >XP_023543069.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 129.4 bits (324), Expect = 1.1e-26
Identity = 59/66 (89.39%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 1  MGWIWMEAVLPLGIIAGMLCIMGNAQYQIHKAAHGRPKHIGNDMWDVAMERRDKKLMENF 60
          MGW W+EA LPLGIIAGMLCIMGNAQY IHKAAHGRPKHIGNDMWDVAMERRDKKL+EN 
Sbjct: 1  MGWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRPKHIGNDMWDVAMERRDKKLVENV 60

Query: 61 SAASHS 67
          SA SHS
Sbjct: 61 SAGSHS 66

[Close]

BLAST of MS013844 vs. NCBI nr
Match: KAG7033699.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.4 bits (324), Expect = 1.1e-26
Identity = 59/66 (89.39%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 1   MGWIWMEAVLPLGIIAGMLCIMGNAQYQIHKAAHGRPKHIGNDMWDVAMERRDKKLMENF 60
           MGW W+EA LPLGIIAGMLCIMGNAQY IHKAAHGRPKHIGNDMWDVAMERRDKKL+EN 
Sbjct: 36  MGWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRPKHIGNDMWDVAMERRDKKLVENV 95

Query: 61  SAASHS 67
           SA SHS
Sbjct: 96  SAGSHS 101

[Close]

BLAST of MS013844 vs. ExPASy Swiss-Prot
Match: Q9C9Z5 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 OS=Arabidopsis thaliana OX=3702 GN=At3g08610 PE=1 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 3.9e-22
Identity = 47/64 (73.44%), Postives = 55/64 (85.94%), Query Frame = 0


Query: 1  MGWIWMEAVLPLGIIAGMLCIMGNAQYQIHKAAHGRPKHIGNDMWDVAMERRDKKLMENF 60
          M  +W+EA+LPLGII GMLCIMGN+QY IHKA HGRPKHIG+D WDVAMERRDKK++E  
Sbjct: 1  MSLVWLEAMLPLGIIGGMLCIMGNSQYYIHKAYHGRPKHIGHDEWDVAMERRDKKVVEKA 60

Query: 61 SAAS 65
          +A S
Sbjct: 61 AAPS 64

[Close]

BLAST of MS013844 vs. ExPASy TrEMBL
Match: A0A6J1DRK7 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 OS=Momordica charantia OX=3673 GN=LOC111023187 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 6.3e-31
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MGWIWMEAVLPLGIIAGMLCIMGNAQYQIHKAAHGRPKHIGNDMWDVAMERRDKKLMENF 60
          MGWIWMEAVLPLGIIAGMLCIMGNAQYQIHKAAHGRPKHIGNDMWDVAMERRDKKLMENF
Sbjct: 1  MGWIWMEAVLPLGIIAGMLCIMGNAQYQIHKAAHGRPKHIGNDMWDVAMERRDKKLMENF 60

Query: 61 SAASHS 67
          SAASHS
Sbjct: 61 SAASHS 66

[Close]

BLAST of MS013844 vs. ExPASy TrEMBL
Match: A0A6J1HU02 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 OS=Cucurbita maxima OX=3661 GN=LOC111466140 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.9e-27
Identity = 60/65 (92.31%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 1  MGWIWMEAVLPLGIIAGMLCIMGNAQYQIHKAAHGRPKHIGNDMWDVAMERRDKKLMENF 60
          M W WMEA LPLGIIAGMLCIMGNAQY IHKAAHGRPKHIGNDMWDVAMERRDKKL+ENF
Sbjct: 1  MAWRWMEAALPLGIIAGMLCIMGNAQYHIHKAAHGRPKHIGNDMWDVAMERRDKKLVENF 60

Query: 61 SAASH 66
          SAASH
Sbjct: 61 SAASH 65

[Close]

BLAST of MS013844 vs. ExPASy TrEMBL
Match: A0A6J1GH44 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 OS=Cucurbita moschata OX=3662 GN=LOC111453870 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.5e-27
Identity = 59/66 (89.39%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 1  MGWIWMEAVLPLGIIAGMLCIMGNAQYQIHKAAHGRPKHIGNDMWDVAMERRDKKLMENF 60
          MGW W+EA LPLGIIAGMLCIMGNAQY IHKAAHGRPKHIGNDMWDVAMERRDKKL+EN 
Sbjct: 1  MGWRWLEAALPLGIIAGMLCIMGNAQYHIHKAAHGRPKHIGNDMWDVAMERRDKKLVENV 60

Query: 61 SAASHS 67
          SA SHS
Sbjct: 61 SAGSHS 66

[Close]

BLAST of MS013844 vs. ExPASy TrEMBL
Match: A0A0A0L2Y7 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 OS=Cucumis sativus OX=3659 GN=Csa_4G337280 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.2e-27
Identity = 58/65 (89.23%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 2  GWIWMEAVLPLGIIAGMLCIMGNAQYQIHKAAHGRPKHIGNDMWDVAMERRDKKLMENFS 61
          GW W+EA LPLGIIAGMLC+MGNAQY IHKAAHGRPKHIGNDMWDVAMERRDKKL+EN S
Sbjct: 3  GWRWLEAALPLGIIAGMLCVMGNAQYYIHKAAHGRPKHIGNDMWDVAMERRDKKLVENLS 62

Query: 62 AASHS 67
          AASHS
Sbjct: 63 AASHS 67

[Close]

BLAST of MS013844 vs. ExPASy TrEMBL
Match: A0A1S3CIY2 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 OS=Cucumis melo OX=3656 GN=LOC103501486 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.1e-26
Identity = 57/65 (87.69%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 2  GWIWMEAVLPLGIIAGMLCIMGNAQYQIHKAAHGRPKHIGNDMWDVAMERRDKKLMENFS 61
          GW W+EA LPLGIIAGMLC+MGNAQY IHKAAHGRPKHIGNDMWDVAMERRDKKL+EN S
Sbjct: 3  GWRWLEAALPLGIIAGMLCVMGNAQYYIHKAAHGRPKHIGNDMWDVAMERRDKKLVENLS 62

Query: 62 AASHS 67
          A SHS
Sbjct: 63 ATSHS 67

[Close]

BLAST of MS013844 vs. TAIR 10
Match: AT3G08610.1 (unknown protein; Has 40 Blast hits to 40 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 104.8 bits (260), Expect = 2.8e-23
Identity = 47/64 (73.44%), Postives = 55/64 (85.94%), Query Frame = 0


Query: 1  MGWIWMEAVLPLGIIAGMLCIMGNAQYQIHKAAHGRPKHIGNDMWDVAMERRDKKLMENF 60
          M  +W+EA+LPLGII GMLCIMGN+QY IHKA HGRPKHIG+D WDVAMERRDKK++E  
Sbjct: 1  MSLVWLEAMLPLGIIGGMLCIMGNSQYYIHKAYHGRPKHIGHDEWDVAMERRDKKVVEKA 60

Query: 61 SAAS 65
          +A S
Sbjct: 61 AAPS 64

The following BLAST results are available for this feature:

BLAST of MS013844 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156255.1	1.3e-30	100.00	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Momordica charanti...	[more]
XP_038881013.1	3.9e-27	92.31	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Benincasa hispida]	[more]
XP_022966508.1	3.9e-27	92.31	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Cucurbita maxima] ...	[more]
XP_022950918.1	1.1e-26	89.39	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Cucurbita moschata...	[more]
KAG7033699.1	1.1e-26	89.39	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1, partial [Cucurbita...	[more]

BLAST of MS013844 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C9Z5	3.9e-22	73.44	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 OS=Arabidopsis thal...	[more]

BLAST of MS013844 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DRK7	6.3e-31	100.00	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 OS=Momordica charan...	[more]
A0A6J1HU02	1.9e-27	92.31	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 OS=Cucurbita maxima...	[more]
A0A6J1GH44	5.5e-27	89.39	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 OS=Cucurbita moscha...	[more]
A0A0A0L2Y7	7.2e-27	89.23	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 OS=Cucumis sativus ...	[more]
A0A1S3CIY2	2.1e-26	87.69	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 OS=Cucumis melo OX=...	[more]

BLAST of MS013844 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G08610.1	2.8e-23	73.44	unknown protein; Has 40 Blast hits to 40 proteins in 15 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017384	NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex subunit 1	PFAM	PF15879	MWFE	coord: 5..56 e-value: 1.0E-11 score: 44.8
IPR017384	NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex subunit 1	PANTHER	PTHR17098	NADH-UBIQUINONE OXIDOREDUCTASE MWFE SUBUNIT	coord: 1..64
None	No IPR available	PANTHER	PTHR17098:SF3	BNAC05G43940D PROTEIN	coord: 1..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS013844.1	MS013844.1	mRNA