MS013799 (gene) Bitter gourd (TR) v1

Overview


Name	MS013799
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	exosome complex component RRP43
Location	scaffold541: 37262 .. 43680 (-)
RNA-Seq Expression	MS013799
Synteny	MS013799

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATTGCCGAATGCTGCTTCTGGGGATTTGTCGTCGGAGATGGAGGTTGATGCTTTTAGACGACTCTTCCCACTTCAGTTTTATGAGCGTCATTTCGCTGAATCGATACGTCCTGATGGAAGAGCACTGGGGAAAGCTAGAGATACAACCATTGCTCTTGGTTAGTCTGTAACCTTTGATTTTCAGAAAATTGCTATTACGATTATTTCCAACTTTTTTTTTATCATCATCGTGTTTGCTTGAATGATTTTCATACTCAAAACTGAATTTGGATATCGTTTTTGTTTATTAAGGGCCGGTATCATCTGCAAATGGTTCTGCCCTGGCTAAGATTGGTTCTACGGTAAGTGCCTCCACTCACGTCTTTATGCTAGAGCAGCTCATGCCTGTATGAGAATGATTAGATTTTGTGATAGTTTGTTCTATATCATTTCAGACAATGTTGGCTGCTATTAAAATGGAAGTAATGACGCCTTCCATAGAGTCACCGGATGAGGGTTGCATAGGTTGGCCATTGTCAGCTTCTAGATATTTTTGGTCCTTGTTCTTCATTATCTTTACAAAAACATCCTATATATCTAGGTGATATTGGGTCTGTTTTTTTTTTTTTTTTTTCCAGCTATTGATTTCCATATGCCCCCAATATGCTCTCCGATTGTTAGGCCTGGGAGACCAGCTGAAGCCGCACCTGTGATTTCAAAGCAGTTATCTGACACCATTTCAAGGTACAGTTTCACCTTTTTTGCAATCTTACGTGATGATATTCTTTTAGTAAGTGTGAATGACAATCAAACTTTAGAAAACCTTTTGAATACTATTGAAATGTTTGGGATGGCTTTGGGATTAAAGGTTAACCTCCTTAGCGGTTGGTATTCATCGCAATGAGAATAGAATCCTAGAGGTATCTAACTTGTTTTCTTGTGGAGTGGGCTGTCTTGTACCTGACATGGGAATGCCTCTGGGGAAATATGAACTTTCAAGACTTTTGGGATTCGGTCATAGATAAATTAAGGAGAAATACTTCTCTCTTGGGGAGTAGCATTATCTCTTGTTCAATTAGTACTCTTCTCTGTTCCCTTATATCATCTCTCTTCAAAATGACTAGCAAGATTTGTTAATATTATAGAAAAGATCATTGGAGACTTTATTTGGAATTGGATAGCAATAATGGGGAAGGCAACCATTTGGTGAATTGGAAAACAACTTGCCTCCCCTTTGCTATTGGTGGCTTGGGGATTGGAAACTTAAGAAGTGGAAATATTGCTCCCATGACTAAATGGCTCGAGAGACTTCCTAAACAAAGGGAGACTTACAAGAAAACCCCAGGGGACCAAAAACGACCGTCCCTCGCTAGAACCATAAAAATTGAATAAAGCAAAGTAAAGACGTGATATCAACAACATCCTTATCAAAGAACGACAAAAATCCAAGTTAAGTGAAGGGCACCCAAGAGAGAGAAGTGATTGAGGCCACTGAACAACCCTTCATAGAAGACAAATGGCTAACCAAGGGAAAAGAGAGGCAAGAGGGGAATCTCCCAACCAATAGTACTCCCAACCTAGCATTTCTAAACTAAAAAAACTTTTTCTCTCATGCTGTTTACAAAATTAGCAATGACAAATTTATGCGTTTTAGGGAGGAAAAATGGCATAATAGGGATCCCCTTCGATTGACCTTTTCTTGCCTTTATGCACTGGCTAACTGGCTAACAGCAAAGACATGAATCTTTTGCAAGGCTAGAACGGTGAGCAAAACTCTTGGTTACTTAACTTTAGAAAGAATTTCAGAGACATTGAGAGTGGATCTCCCTGATGGATGTTTTGAATTATGTGGTTCTTAGGGAGGAGGATGATATTCATTATTTTGCAATGGTCTCGGTCAAGAAACTTCACTTTTAGTTTTCTTCTATTTATTTAGTTATAGTATGGGTATGGGGAACCCACTCCTTGTGTTATGCTCATCCCCCACTAACCCAGAACAAGGATGTTAAATTATTAAGTCTTCAAACAGGGTGCTTGAAACTAGGATGTCTGGGATATCTCCAAACCTCCCAAACTCTTATAACTATTGGATCCTTGGAAATTTCAAGCAACTTCACTATCAAATCCTTCAATAAATTAGCCAGTGGCTAGGAATCCCAAAGTAAGACTACAACAAACTGATTTGGAAGAGCAGAAGCCCAAAGAAAGTTACATTCTTCTAGTGGACTTTTCTTCTTCGGTTTTATGCCTCTTGGTCGGTCCTTTCCTATGGGCGTCGATCTCAACCATATTTTTCTTTAACGTAAATTTACTAAAGAGATTTGGACATTGGTGTTGAAAGAGTGTGGGCTGTTTTGGTGTTTTCTTGAAGAGGCTGCTTCTACTTTTTCTCAATTACTTTATGCTCCTTTTAAGAGGAAAGACAAAGATCTTGCCATATTGTAGAAAGTCTGGCTTGAAAGAATCGAGAGGCTTTTCTGAGGCGAAAGAGAAACAAGTGATTGTCTTTTGTAGCCCACTCTCGGGTCTATCCCCTTTTGTATTCATATTTCATGTTATCAATGAAATAGTTTCTTTTTGAAAAAAAAAAAAAAACAAAAAAGAGAAACAAGTGATTCAATTTTAGTGTTTTTTTATGATGCTCTAGATCAAAACTCTTCCGTACTCGTTCTCCTTTTTTATTTTTGCGAATTGGAGGATGGATTTTTTTGTAGCTTTGTGTTAGACCTCCAATTGTAAATGTCTATGCTAGGAAGGGTAAAGGGGGAAATTCATCATCAAGTTAGTTATGGAGTGAAGGGGAGAACGTGTTATGGGATAAAAGTAGGAAGTTAGTGGGAGTTAGGGGTCTTGTGTATTGTGTATGCTCAGTTGAACTGTAGGGAGAGTTTCCGGCCCTCTCGAATTGGCCGTCGGTGTGTACTGTGTTGATGTTTTGGTGTTTTGTCTTTGAATTCCAAGAATTAGTAAGGAGTATCCTTACACTTTGTTTGGTTTTGTTGGATGGATTTTCAATATTCTGTTGTTGTTCTGTCCACGGCCCTTTTCATGCTCTTTATATGTGATCCTAAAAACTTCATGCTGTTTAAGGGAGATTTGGTGAAAAGGATGCAACACACTCTTTTTTATATGTTTTTATTTTATTTTCTGATCTCTTATCCTTGTCCTAAAAGTCAATTTCATTTGAATCTAAAGTATTTGACTGCCTAATTAAGAAACTGATGATGTGACCTTTTCAGTTCTGGGATGATTGATCTGAGAGAATTATCTCTTGTTAAAGGAAAAGCTGCTTGGATGGCATACCTGGTATGTACTTCAAATTTATGCATTGTTAATATCTACATTTTCTTGAGTCTAGAAGTATTTTGGTATTTGAAGTAAGGTCCACTACTGGTTTATCTTTATATTTTTTCCCTGAAATTTGTACTTGCGCTATCCTTACTCATACTGGACATTTTCTCTTTATAACATGATTTTTGGCTAGATTGCAGTTCATTATTGCAGTTAATAGTTTTTGATGAGATAGCAACTTGAAATGTGTTCCACAGGATATTTATTGTTTGGATGCCGATGGATCTCTTTTTGATGCTGCACTTCTTTCTGCAGCTGCTGCATTTTCTCATTGTAAGATTTCAGGCTCTCCACTAGTTGATAACTTGATAAATTTCTGCATACTTTAGTATATGTGATGCTTATGGCAGTAATGCTGGTTATGGGACATTTGTCCTCCGTTAAGAACTGTTTTTCAGATTATAGATTGATACTTTATACTTTGAATCCTTTATACATAGACTTTTGTTACCAGATTACCTTCCAGTAATTTTATTTTTTATTTTATTCTTATTATTTTTTTATTTTTTACTTTTGGATATCCGTGTGTCCGGGTCAGCTTACGCACACCTCGACTATTTACGGGTCAATCGCCTGATCCTACTACATTTGGTTGACAAAGAAACTCGTAGGATATTAAATCCTAGGTAGGTGGCCACCATGGTTTGAACCCATTCCCTCTAAGTCCTTCGTTATTTACATTGGCATTGACCACTTTCAGTAATTGCTTCCCTTTCTTCAAATTTCTTCTATGGTTATCAATATTTACAAGGACCATTTAGAATCATTTCTTAAATATCAAAGACTTAAGCGTCATTTTCCAAATTTCAAGGACTGAACAGAAACCAATTTAAACGTGGTATCATTTTCTGGGAAAAATTATTTCTGGTGAGAGGCACCCAAGAAGAGGTTGTAGATTGTACTTCATCTCAAAATAAATCCTCTCTTAAAAGTTTTTTGTTTTATTTTCATCCAAATAAGCCACAATAACGCCCTAGCCACACAAATTCTAAGAGCTCTAGCGTTGTCTTTTAACACCAGCTTGAGGAATAATTTGGCCCCCCCCCCCCTCAAAAAAAAAACCTATTGGATACAAATTTAAAAATCTTCATGTCCTAATAAGCACTTGATTTAAATTTAAGGTGGTTTTGTGGTTTCTCACTCATAAATCTAACGGTGTAAACCACACTGTGGCGGTCTCTTCCAATAATTTCTCCATCTTAGGGACTTTGGTCAACTAATTATCAACACAATTAGGCATGCAAAGAGGCATTGTTGAAAAGTATGTTGGATGGATCATTGAAACTGCTACATCATTCCTTCTGAGTAATTCTTCCAAATGGAATAAGGCACCATTAGAGGTCTGAGTACAAATTCTTGAAAGGAAAGAGAGCTTATCCTCGTGTCTCAACAAGCGTTTTACTTGATCCCATTCTTGGACTATAAAATTTGTCAATGCTGTGAACCATTATTTTTGCAAGGAAGCTTCAGGAGAAAGAATTTCATGATATGATTATGAATTAATATAACTCAATGCGTAGTGTTATTTAAAAAGTAATAAGCCAACTAATTGCCATGGTAAAGAACAAGGAAGGTATATATATATAAAAAAAAAAGAGAATACATAAGCTAAGCACTCTTTAGAACCTATTGGCTTGCATCAGGTACCCAATATGTGTTGGATATGATACTTTTCCTAATATTTATGCTACAAAGCCTACTGGTGAGCCTTTAATACTTAATGATTTTTTCCTCTTTAGGGTTTCAGGGTTTATAGTATGACTTGCACCCACGGTATGAGGGGGTATGGCATGAAGTAGGTTCAGTCCTTTGTTTCACCTCATTGGAAAACTTATGACCACCTTGATTTTATGATTTAACTTGTGAAAATTTTTATAGGTATGCATAAGCTATAGGGTAGCCCAATTGGAGGTTTTTTTTTTTGGTAATTCCTTTGGCTTTGTAGGAAACTATTTAGTATTTTTCTTCGGTTAATAGTGAAGAAAAATCAAGAACTTCTTGTGTGTTATCTTCTGTTGATCCCATTTGAACCATGTCAGCGATTATTGGCTATTTTACGAGGCTTTATTTGAAGAATCTAATAATTGCTCTTCAAAAGCTAAGAAATGCTAATAAGAGGTTTATCTTCTGGTGATCCCATTTGAACCTTGTCAGCAATTATTGGCTATTTTACAAGGCTTTATTTGAAGAATCTAATAATTGCTCTTCAAAAGCTAAGAAATGCTAATACGAGGTTTCTTTTTATGTTTTTTATTTTATTGTTTGTTAACTTGGTAGTTTGAACTACTTCTAGGATGATTGCTTCTTTTTCCTCAGTTAAGCCATATTTTAAACTTCCTGGTTTATATTGTTAGTGCAAATCCCTGTTGTTGCTCTAAATGATGATGGGAAAGTAGTATTTGTCTCCGAGGAAGAAGGGGGAGAAAACTTTGAGAAGGAGCCTGTCAACAAAGAGAAAAGGAAACTGAAATTGAGCTCTATTCCTTTCTCATTAACATGCATACTCCACAAGAACCACATCTTGGCAGACCCTACTGCAGAGGAGGAGTCCATCATGGAAACTATTGTGACCGTGGTTTTAGATTTGTTGGGTCAACTCGTATCCTTCTACAAGCCGGGTGGATCCGTTCTTGCCTTTACATCTGCTGTTCAGGTTGGTCTCTTCCATCTCTGGAAAGTTTATTGATGGAATCCAATTCCGGATTAGCTCCCTGGATTTCTTCTTTCTTTGCTTTTTCCCTGTCTACTTCAGTTTGGTGAAGCTGGTTGGATTTTCAATCTGATATTGGATTGTGAAATTTGATTTTATTATAACGGTAATTTAAAGTGTTTGATTCTTTCAAAAGTGTTCTTGAAAATTCACGTCTATAGATGAAGCATCTGATTAGTATTTATTGGTTCTCTCAAAATTCATGTTAAACTCTAAATATAATTGTGATTTAAAGTGTGAGTGAATACATCCTTAGCTTTAAGCTAATGCACGAGCGGATGACATGGTTGCAGGATTGCGTTGCACTGACGAGACAGAGAGTGAAGGAACTTCAAGTGATTTTAGACGAAGCGATTTCTGGTATGGAAATTGAC

mRNA sequence

ATGGGATTGCCGAATGCTGCTTCTGGGGATTTGTCGTCGGAGATGGAGGTTGATGCTTTTAGACGACTCTTCCCACTTCAGTTTTATGAGCGTCATTTCGCTGAATCGATACGTCCTGATGGAAGAGCACTGGGGAAAGCTAGAGATACAACCATTGCTCTTGGGCCGGTATCATCTGCAAATGGTTCTGCCCTGGCTAAGATTGGTTCTACGACAATGTTGGCTGCTATTAAAATGGAAGTAATGACGCCTTCCATAGAGTCACCGGATGAGGGTTGCATAGCTATTGATTTCCATATGCCCCCAATATGCTCTCCGATTGTTAGGCCTGGGAGACCAGCTGAAGCCGCACCTGTGATTTCAAAGCAGTTATCTGACACCATTTCAAGTTCTGGGATGATTGATCTGAGAGAATTATCTCTTGTTAAAGGAAAAGCTGCTTGGATGGCATACCTGGATATTTATTGTTTGGATGCCGATGGATCTCTTTTTGATGCTGCACTTCTTTCTGCAGCTGCTGCATTTTCTCATTTGCAAATCCCTGTTGTTGCTCTAAATGATGATGGGAAAGTAGTATTTGTCTCCGAGGAAGAAGGGGGAGAAAACTTTGAGAAGGAGCCTGTCAACAAAGAGAAAAGGAAACTGAAATTGAGCTCTATTCCTTTCTCATTAACATGCATACTCCACAAGAACCACATCTTGGCAGACCCTACTGCAGAGGAGGAGTCCATCATGGAAACTATTGTGACCGTGGTTTTAGATTTGTTGGGTCAACTCGTATCCTTCTACAAGCCGGGTGGATCCGTTCTTGCCTTTACATCTGCTGTTCAGGATTGCGTTGCACTGACGAGACAGAGAGTGAAGGAACTTCAAGTGATTTTAGACGAAGCGATTTCTGGTATGGAAATTGAC

Coding sequence (CDS)

ATGGGATTGCCGAATGCTGCTTCTGGGGATTTGTCGTCGGAGATGGAGGTTGATGCTTTTAGACGACTCTTCCCACTTCAGTTTTATGAGCGTCATTTCGCTGAATCGATACGTCCTGATGGAAGAGCACTGGGGAAAGCTAGAGATACAACCATTGCTCTTGGGCCGGTATCATCTGCAAATGGTTCTGCCCTGGCTAAGATTGGTTCTACGACAATGTTGGCTGCTATTAAAATGGAAGTAATGACGCCTTCCATAGAGTCACCGGATGAGGGTTGCATAGCTATTGATTTCCATATGCCCCCAATATGCTCTCCGATTGTTAGGCCTGGGAGACCAGCTGAAGCCGCACCTGTGATTTCAAAGCAGTTATCTGACACCATTTCAAGTTCTGGGATGATTGATCTGAGAGAATTATCTCTTGTTAAAGGAAAAGCTGCTTGGATGGCATACCTGGATATTTATTGTTTGGATGCCGATGGATCTCTTTTTGATGCTGCACTTCTTTCTGCAGCTGCTGCATTTTCTCATTTGCAAATCCCTGTTGTTGCTCTAAATGATGATGGGAAAGTAGTATTTGTCTCCGAGGAAGAAGGGGGAGAAAACTTTGAGAAGGAGCCTGTCAACAAAGAGAAAAGGAAACTGAAATTGAGCTCTATTCCTTTCTCATTAACATGCATACTCCACAAGAACCACATCTTGGCAGACCCTACTGCAGAGGAGGAGTCCATCATGGAAACTATTGTGACCGTGGTTTTAGATTTGTTGGGTCAACTCGTATCCTTCTACAAGCCGGGTGGATCCGTTCTTGCCTTTACATCTGCTGTTCAGGATTGCGTTGCACTGACGAGACAGAGAGTGAAGGAACTTCAAGTGATTTTAGACGAAGCGATTTCTGGTATGGAAATTGAC

Protein sequence

MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISGMEID

Homology

[Close]

BLAST of MS013799 vs. NCBI nr
Match: XP_022152237.1 (exosome complex component RRP43 [Momordica charantia])

HSP 1 Score: 583.9 bits (1504), Expect = 7.7e-163
Identity = 303/304 (99.67%), Postives = 303/304 (99.67%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

Query: 181 PVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAE 240
           PVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAE
Sbjct: 181 PVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAE 240

Query: 241 EESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG 300
           EESIMETIVTVVLDL GQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG
Sbjct: 241 EESIMETIVTVVLDLSGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG 300

Query: 301 MEID 305
           MEID
Sbjct: 301 MEID 304

[Close]

BLAST of MS013799 vs. NCBI nr
Match: XP_008460772.1 (PREDICTED: exosome complex component RRP43 isoform X1 [Cucumis melo])

HSP 1 Score: 563.1 bits (1450), Expect = 1.4e-156
Identity = 285/304 (93.75%), Postives = 299/304 (98.36%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSS+MEVDAFRRLFP+QFYERH AESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 13  MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 72

Query: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAKIGSTTMLAAIKMEVMTPS+ESPDEGCIA+DFHMPP+CSPIVRPGRPAEAAPVI
Sbjct: 73  NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 132

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
Sbjct: 133 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 192

Query: 181 PVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAE 240
           PVVALNDDG+VVFVSEEEGGENFEKEPVNKEKRKLKL+S+PFSLTC+LHK +ILADPTAE
Sbjct: 193 PVVALNDDGRVVFVSEEEGGENFEKEPVNKEKRKLKLNSVPFSLTCLLHKKYILADPTAE 252

Query: 241 EESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG 300
           EES+METIVTVVLD  GQLVSFYKPGGSVLA+TSAVQDC+ALTRQR KELQ+ILDEAISG
Sbjct: 253 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAISG 312

Query: 301 MEID 305
           MEID
Sbjct: 313 MEID 316

[Close]

BLAST of MS013799 vs. NCBI nr
Match: XP_023544252.1 (exosome complex component RRP43 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 563.1 bits (1450), Expect = 1.4e-156
Identity = 288/304 (94.74%), Postives = 299/304 (98.36%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSSEMEVDAFRRLFP+QF+ERH AESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAK+GSTTMLAAIKMEVMTPSIESPDEGCIA+DFHMPPICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

Query: 181 PVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAE 240
           PVVALNDDGKVVFVSEEEGGENFEKE VNKEKRKLKL+S+PFSLTC+LHKN+ILADPTAE
Sbjct: 181 PVVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAE 240

Query: 241 EESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG 300
           EES+METIVTVVLD  GQLVSFYKPGGSVLA+TSAVQDCVALTRQR KELQ+ILDEAISG
Sbjct: 241 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISG 300

Query: 301 MEID 305
           MEID
Sbjct: 301 MEID 304

[Close]

BLAST of MS013799 vs. NCBI nr
Match: XP_008460773.1 (PREDICTED: exosome complex component RRP43 isoform X2 [Cucumis melo] >XP_008460774.1 PREDICTED: exosome complex component RRP43 isoform X2 [Cucumis melo])

HSP 1 Score: 563.1 bits (1450), Expect = 1.4e-156
Identity = 285/304 (93.75%), Postives = 299/304 (98.36%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSS+MEVDAFRRLFP+QFYERH AESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAKIGSTTMLAAIKMEVMTPS+ESPDEGCIA+DFHMPP+CSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

Query: 181 PVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAE 240
           PVVALNDDG+VVFVSEEEGGENFEKEPVNKEKRKLKL+S+PFSLTC+LHK +ILADPTAE
Sbjct: 181 PVVALNDDGRVVFVSEEEGGENFEKEPVNKEKRKLKLNSVPFSLTCLLHKKYILADPTAE 240

Query: 241 EESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG 300
           EES+METIVTVVLD  GQLVSFYKPGGSVLA+TSAVQDC+ALTRQR KELQ+ILDEAISG
Sbjct: 241 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAISG 300

Query: 301 MEID 305
           MEID
Sbjct: 301 MEID 304

[Close]

BLAST of MS013799 vs. NCBI nr
Match: KAG7033523.1 (Exosome complex component RRP43 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 562.0 bits (1447), Expect = 3.1e-156
Identity = 287/304 (94.41%), Postives = 299/304 (98.36%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSSEMEVDAFRRLFP+QF+ERH AESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAK+GSTTMLAAIKMEVMTPSIESPDEGCIA+DFHMPPICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

Query: 181 PVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAE 240
           PVVALNDDGKVVFVSEEEGGENFEKE VNKE+RKLKL+S+PFSLTC+LHKN+ILADPTAE
Sbjct: 181 PVVALNDDGKVVFVSEEEGGENFEKEAVNKERRKLKLNSLPFSLTCLLHKNYILADPTAE 240

Query: 241 EESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG 300
           EES+METIVTVVLD  GQLVSFYKPGGSVLA+TSAVQDCVALTRQR KELQ+ILDEAISG
Sbjct: 241 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISG 300

Query: 301 MEID 305
           MEID
Sbjct: 301 MEID 304

[Close]

BLAST of MS013799 vs. ExPASy Swiss-Prot
Match: Q96B26 (Exosome complex component RRP43 OS=Homo sapiens OX=9606 GN=EXOSC8 PE=1 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.1e-46
Identity = 100/284 (35.21%), Postives = 166/284 (58.45%), Query Frame = 0


Query: 20  FRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKM 79
           F+ + PL++Y R   E+ RPDGR LG+ R TT+ +G +S+A+GSAL K+G+TT++  +K 
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKA 64

Query: 80  EVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 139
           E   PS ++PD+G +  +  +PP+CS   R G P E A V S+ ++D I +S +I   +L
Sbjct: 65  EFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDL 124

Query: 140 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEG 199
            +  GK  W+ Y D+ CLD DG++ DA   +  AA  ++Q+P V +N++  +  V+    
Sbjct: 125 CISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVN---- 184

Query: 200 GENFEKEPVNKEKRKLKLSSIPFSLT-CILHKNHILADPTAEEESIMETIVTVVLDLLGQ 259
                     K+K  L + + P + +  +     ++ DPT EEE +    +T+V+D  G+
Sbjct: 185 ---------LKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGK 244

Query: 260 LVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISGME 303
           L   +KPGGS L   + +QDC++    R KE++ ++DE I  M+
Sbjct: 245 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDEVIKSMK 274

[Close]

BLAST of MS013799 vs. ExPASy Swiss-Prot
Match: Q9D753 (Exosome complex component RRP43 OS=Mus musculus OX=10090 GN=Exosc8 PE=1 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 8.0e-46
Identity = 101/283 (35.69%), Postives = 163/283 (57.60%), Query Frame = 0


Query: 20  FRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKM 79
           F+ + PL++Y R   E+ RPDGR LG+ R TT+ +G +S+A+GSAL K+G+TT++  +K 
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKA 64

Query: 80  EVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 139
           E   P +++PD G +  +  +PP+CS   R G P E A V S+ ++D + +S +I   +L
Sbjct: 65  EFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVVDNSQVIKKEDL 124

Query: 140 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEG 199
            +  GK AW+ Y D+ CLD DG++ DA   +  AA  ++Q+P V +N++  +  V+    
Sbjct: 125 CISPGKLAWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVN---- 184

Query: 200 GENFEKEPVNKEKRKLKLSSIPFSLT-CILHKNHILADPTAEEESIMETIVTVVLDLLGQ 259
                     K+K  L + + P + +  +     ++ DPT EEE +    +TVV D  G+
Sbjct: 185 ---------LKKKSYLNVRTNPVATSFAVFDDTLLIVDPTGEEEHLSTGTLTVVTDEDGK 244

Query: 260 LVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISGM 302
           L   +KPGGS L   + +QDC++    R KE+  +LDE I  M
Sbjct: 245 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVSKLLDEVIQSM 273

[Close]

BLAST of MS013799 vs. ExPASy Swiss-Prot
Match: Q2KHU3 (Exosome complex component RRP43 OS=Bos taurus OX=9913 GN=EXOSC8 PE=2 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.3e-43
Identity = 98/284 (34.51%), Postives = 163/284 (57.39%), Query Frame = 0


Query: 20  FRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKM 79
           F+ + PL++Y R   E+ RPDGR LG+ R TT+ +G + +A+GSAL K+G+TT++  IK 
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNVGSIGTADGSALVKLGNTTVICGIKA 64

Query: 80  EVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 139
           E   P  ++PD+G +  +  + P+CS   R G P E A V S+ ++D I +S +I   +L
Sbjct: 65  EFGAPPTDAPDKGYVVPNVDLSPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDL 124

Query: 140 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEG 199
            +  GK AW+ Y D+ CL+ DG++ DA   +  AA  ++Q+P V +N++  +  V+    
Sbjct: 125 CISSGKLAWVLYCDLICLNHDGNILDACTFALLAALKNVQLPEVTINEETALAEVN---- 184

Query: 200 GENFEKEPVNKEKRKLKLSSIPFSLT-CILHKNHILADPTAEEESIMETIVTVVLDLLGQ 259
                     K+K  L + + P + +  +     ++ DPT EEE +    +TVV+D  G+
Sbjct: 185 ---------LKKKSCLNIRTHPVATSFAVFDDTLLIVDPTEEEEHLATGTLTVVMDEEGR 244

Query: 260 LVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISGME 303
           L   +KPGGS L   + +QDC++    R KE++ ++DE    M+
Sbjct: 245 LCCLHKPGGSGLT-GAKLQDCMSRAVTRHKEVKKLMDEVFKSMK 274

[Close]

BLAST of MS013799 vs. ExPASy Swiss-Prot
Match: Q10205 (Exosome complex component rrp43 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp43 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.5e-31
Identity = 80/267 (29.96%), Postives = 143/267 (53.56%), Query Frame = 0


Query: 20  FRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKM 79
           F+++ P Q+      + +R DGR++ + R+  I    +S+ANGSA+ + G    +  IK 
Sbjct: 17  FKKITPEQYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKA 76

Query: 80  EVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLREL 139
           E+  P   SP+EG I  +  + P+CS   +PG P++ A V+S++L  T+  S +I+L+ L
Sbjct: 77  EIAEPFENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTLQQSNLINLQSL 136

Query: 140 SLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEG 199
            + + KAAW+ Y DI CL+ DGS FD A  +  AA   +++P    ++D + V  +    
Sbjct: 137 CIFEKKAAWVLYADIICLNYDGSAFDYAWAALFAALKTVKLPTAVWDEDLERVICA---- 196

Query: 200 GENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDLLGQL 259
                    +   R ++LS+   S +  +  + +LADPT EEE +    +T++L+    +
Sbjct: 197 ---------STLTRPVQLSTEVRSFSWSVFDDKLLADPTDEEEDLSTEFLTIMLNSSKNI 256

Query: 260 VSFYKPGGSVLAFTSAVQDCVALTRQR 287
           V   K GG+ +     ++ C+ + R +
Sbjct: 257 VKIIKLGGTHIQ-PLLLKKCIEVARSK 269

[Close]

BLAST of MS013799 vs. ExPASy Swiss-Prot
Match: Q8TYC2 (Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) OX=190192 GN=rrp42 PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.6e-31
Identity = 81/255 (31.76%), Postives = 140/255 (54.90%), Query Frame = 0


Query: 38  RPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAID 97
           R DGR   + R   +  G +S ANGSAL ++G+T ++  +K+EV  P  +SP+EG +A++
Sbjct: 23  RIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRPYPDSPNEGALAVN 82

Query: 98  FHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCL 157
             + P+  P   PG P E A  +S+ +   I  S MIDL EL + +G+  W+ ++DI+ L
Sbjct: 83  AELVPLADPSFEPGPPDENAIELSRVVDRGIRESEMIDLEELCIEEGEHCWVTFVDIHVL 142

Query: 158 DADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKL 217
           D DG+LFDA+++ + +A S  ++P   + DD               E E + ++   L +
Sbjct: 143 DHDGNLFDASMIGSVSALSITEVPKAEVVDD---------------EVEVMEEDTEPLAI 202

Query: 218 SSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTS-AV 277
           +  P S+T      ++L DP  EEE IM+T +TV +   G++ +  K  G +  F    +
Sbjct: 203 NDFPISVTIAKVGEYLLVDPCLEEEVIMDTRLTVTVTESGEVCAVQK--GELGDFPEHLL 260

Query: 278 QDCVALTRQRVKELQ 292
           +D + L  ++ +E++
Sbjct: 263 EDAIDLATKKAEEVR 260

[Close]

BLAST of MS013799 vs. ExPASy TrEMBL
Match: A0A6J1DFM7 (exosome complex component RRP43 OS=Momordica charantia OX=3673 GN=LOC111020008 PE=4 SV=1)

HSP 1 Score: 583.9 bits (1504), Expect = 3.7e-163
Identity = 303/304 (99.67%), Postives = 303/304 (99.67%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

Query: 181 PVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAE 240
           PVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAE
Sbjct: 181 PVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAE 240

Query: 241 EESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG 300
           EESIMETIVTVVLDL GQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG
Sbjct: 241 EESIMETIVTVVLDLSGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG 300

Query: 301 MEID 305
           MEID
Sbjct: 301 MEID 304

[Close]

BLAST of MS013799 vs. ExPASy TrEMBL
Match: A0A1S3CEE1 (exosome complex component RRP43 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499535 PE=4 SV=1)

HSP 1 Score: 563.1 bits (1450), Expect = 6.8e-157
Identity = 285/304 (93.75%), Postives = 299/304 (98.36%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSS+MEVDAFRRLFP+QFYERH AESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAKIGSTTMLAAIKMEVMTPS+ESPDEGCIA+DFHMPP+CSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

Query: 181 PVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAE 240
           PVVALNDDG+VVFVSEEEGGENFEKEPVNKEKRKLKL+S+PFSLTC+LHK +ILADPTAE
Sbjct: 181 PVVALNDDGRVVFVSEEEGGENFEKEPVNKEKRKLKLNSVPFSLTCLLHKKYILADPTAE 240

Query: 241 EESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG 300
           EES+METIVTVVLD  GQLVSFYKPGGSVLA+TSAVQDC+ALTRQR KELQ+ILDEAISG
Sbjct: 241 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAISG 300

Query: 301 MEID 305
           MEID
Sbjct: 301 MEID 304

[Close]

BLAST of MS013799 vs. ExPASy TrEMBL
Match: A0A1S3CD66 (exosome complex component RRP43 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499535 PE=4 SV=1)

HSP 1 Score: 563.1 bits (1450), Expect = 6.8e-157
Identity = 285/304 (93.75%), Postives = 299/304 (98.36%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSS+MEVDAFRRLFP+QFYERH AESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 13  MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 72

Query: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAKIGSTTMLAAIKMEVMTPS+ESPDEGCIA+DFHMPP+CSPIVRPGRPAEAAPVI
Sbjct: 73  NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 132

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
Sbjct: 133 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 192

Query: 181 PVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAE 240
           PVVALNDDG+VVFVSEEEGGENFEKEPVNKEKRKLKL+S+PFSLTC+LHK +ILADPTAE
Sbjct: 193 PVVALNDDGRVVFVSEEEGGENFEKEPVNKEKRKLKLNSVPFSLTCLLHKKYILADPTAE 252

Query: 241 EESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG 300
           EES+METIVTVVLD  GQLVSFYKPGGSVLA+TSAVQDC+ALTRQR KELQ+ILDEAISG
Sbjct: 253 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCIALTRQRSKELQIILDEAISG 312

Query: 301 MEID 305
           MEID
Sbjct: 313 MEID 316

[Close]

BLAST of MS013799 vs. ExPASy TrEMBL
Match: A0A6J1ESF5 (exosome complex component RRP43 OS=Cucurbita moschata OX=3662 GN=LOC111435558 PE=4 SV=1)

HSP 1 Score: 561.2 bits (1445), Expect = 2.6e-156
Identity = 287/304 (94.41%), Postives = 298/304 (98.03%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSSEMEVDAFRRLFP+QF+ERH AESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAK+GSTTMLAAIKMEVMTPSIESPDEGCIA+DFHMPPICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

Query: 181 PVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAE 240
           P VALNDDGKVVFVSEEEGGENFEKE VNKEKRKLKL+S+PFSLTC+LHKN+ILADPTAE
Sbjct: 181 PFVALNDDGKVVFVSEEEGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAE 240

Query: 241 EESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG 300
           EES+METIVTVVLD  GQLVSFYKPGGSVLA+TSAVQDCVALTRQR KELQ+ILDEAISG
Sbjct: 241 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISG 300

Query: 301 MEID 305
           MEID
Sbjct: 301 MEID 304

[Close]

BLAST of MS013799 vs. ExPASy TrEMBL
Match: A0A6J1HVL5 (exosome complex component RRP43 OS=Cucurbita maxima OX=3661 GN=LOC111467240 PE=4 SV=1)

HSP 1 Score: 558.5 bits (1438), Expect = 1.7e-155
Identity = 286/304 (94.08%), Postives = 298/304 (98.03%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSA 60
           MGLPNAASGDLSSEMEVDAFRRLFP+QF+ERH AESIRPDGRALGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSEMEVDAFRRLFPIQFFERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI 120
           NGSALAK+GSTTMLAAIKMEVMTPSIESPDEGCIA+DFHMP ICSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKVGSTTMLAAIKMEVMTPSIESPDEGCIAVDFHMPSICSPIVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180
           SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI
Sbjct: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180

Query: 181 PVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAE 240
           PVVALNDDGKVVFVSEE+GGENFEKE VNKEKRKLKL+S+PFSLTC+LHKN+ILADPTAE
Sbjct: 181 PVVALNDDGKVVFVSEEKGGENFEKEAVNKEKRKLKLNSLPFSLTCLLHKNYILADPTAE 240

Query: 241 EESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG 300
           EES+METIVTVVLD  GQLVSFYKPGGSVLA+TSAVQDCVALTRQR KELQ+ILDEAISG
Sbjct: 241 EESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQDCVALTRQRSKELQMILDEAISG 300

Query: 301 MEID 305
           MEID
Sbjct: 301 MEID 304

[Close]

BLAST of MS013799 vs. TAIR 10
Match: AT1G60080.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 436.8 bits (1122), Expect = 1.4e-122
Identity = 227/307 (73.94%), Postives = 266/307 (86.64%), Query Frame = 0


Query: 1   MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSA 60
           MG+P+AA  DLS+EMEVDAFRR+FPL+F+ERH +ES+RPDGR LGKARDT + LG VS+A
Sbjct: 1   MGIPDAAQ-DLSTEMEVDAFRRIFPLRFFERHLSESLRPDGRQLGKARDTIVNLGLVSTA 60

Query: 61  NGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI 120
           +GSALAKIGSTTMLAAI+MEVMTPS +SPDEGCIAI+FHMPPICSP VRPGRPAEAAPVI
Sbjct: 61  DGSALAKIGSTTMLAAIRMEVMTPSTDSPDEGCIAIEFHMPPICSPTVRPGRPAEAAPVI 120

Query: 121 SKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQI 180
           SK+LSDTI SSGMIDL+EL LV GKAAWM YLDIYCLDADG+LFDAALL+A AAFS+LQI
Sbjct: 121 SKRLSDTILSSGMIDLKELCLVSGKAAWMGYLDIYCLDADGALFDAALLAAVAAFSNLQI 180

Query: 181 PVVALNDDGKVVFVSEEEGGEN---FEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADP 240
           P+VALND+G++V V+ E+  +N    EKE VNKEKRKL L +IPFSLTCILHKN+ILADP
Sbjct: 181 PIVALNDNGRIVAVTGEKDQDNALITEKEAVNKEKRKLTLKNIPFSLTCILHKNYILADP 240

Query: 241 TAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEA 300
           T EEESIM+T+VTVVLD   Q+VSFYK GG+ LA++SA++ CV L R+R KEL+ IL E 
Sbjct: 241 TTEEESIMDTLVTVVLDSSDQMVSFYKSGGAALAYSSAIKSCVELARKRAKELKQILGE- 300

Query: 301 ISGMEID 305
              M+ID
Sbjct: 301 ---MDID 302

[Close]

BLAST of MS013799 vs. TAIR 10
Match: AT3G07750.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 105.5 bits (262), Expect = 7.5e-23
Identity = 87/287 (30.31%), Postives = 135/287 (47.04%), Query Frame = 0


Query: 26  LQFYERHF-----AESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKME 85
           L   E+HF     A+ +R DGR     R   +  G +  ANGSA  +IG T ++A++K E
Sbjct: 3   LSLGEQHFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAE 62

Query: 86  VMTPSIESPDEGCIAIDFHMPPICSPIV--RPGR--PAEAAPVISKQLSDTISSSGM-ID 145
           +  PS   PD+G +A+     P   P    R G    +E A  + + L    S +G  I+
Sbjct: 63  IGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGIN 122

Query: 146 LRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVS 205
           L  L + +GK  W  Y+D   + +DG+L DA   +  AA ++  IP        KV   +
Sbjct: 123 LSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIP--------KVNVSA 182

Query: 206 EEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDL 265
           E    E  E +  ++E  +   SS+P  +T      H + D TAEEES M + V++ ++ 
Sbjct: 183 EVADDEQPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNR 242

Query: 266 LGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISGME 303
            G +    K  GS L   S + D +++ +   + L   LD  IS  E
Sbjct: 243 TGHICGLTKRSGSGLD-PSVILDMISVAKHVTETLMSKLDSEISAAE 280

[Close]

BLAST of MS013799 vs. TAIR 10
Match: AT3G07750.2 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 105.5 bits (262), Expect = 7.5e-23
Identity = 87/287 (30.31%), Postives = 135/287 (47.04%), Query Frame = 0


Query: 26  LQFYERHF-----AESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKME 85
           L   E+HF     A+ +R DGR     R   +  G +  ANGSA  +IG T ++A++K E
Sbjct: 3   LSLGEQHFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAE 62

Query: 86  VMTPSIESPDEGCIAIDFHMPPICSPIV--RPGR--PAEAAPVISKQLSDTISSSGM-ID 145
           +  PS   PD+G +A+     P   P    R G    +E A  + + L    S +G  I+
Sbjct: 63  IGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGIN 122

Query: 146 LRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVS 205
           L  L + +GK  W  Y+D   + +DG+L DA   +  AA ++  IP        KV   +
Sbjct: 123 LSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIP--------KVNVSA 182

Query: 206 EEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDL 265
           E    E  E +  ++E  +   SS+P  +T      H + D TAEEES M + V++ ++ 
Sbjct: 183 EVADDEQPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNR 242

Query: 266 LGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISGME 303
            G +    K  GS L   S + D +++ +   + L   LD  IS  E
Sbjct: 243 TGHICGLTKRSGSGLD-PSVILDMISVAKHVTETLMSKLDSEISAAE 280

The following BLAST results are available for this feature:

BLAST of MS013799 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152237.1	7.7e-163	99.67	exosome complex component RRP43 [Momordica charantia]	[more]
XP_008460772.1	1.4e-156	93.75	PREDICTED: exosome complex component RRP43 isoform X1 [Cucumis melo]	[more]
XP_023544252.1	1.4e-156	94.74	exosome complex component RRP43 [Cucurbita pepo subsp. pepo]	[more]
XP_008460773.1	1.4e-156	93.75	PREDICTED: exosome complex component RRP43 isoform X2 [Cucumis melo] >XP_0084607...	[more]
KAG7033523.1	3.1e-156	94.41	Exosome complex component RRP43 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of MS013799 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96B26	2.1e-46	35.21	Exosome complex component RRP43 OS=Homo sapiens OX=9606 GN=EXOSC8 PE=1 SV=1	[more]
Q9D753	8.0e-46	35.69	Exosome complex component RRP43 OS=Mus musculus OX=10090 GN=Exosc8 PE=1 SV=1	[more]
Q2KHU3	1.3e-43	34.51	Exosome complex component RRP43 OS=Bos taurus OX=9913 GN=EXOSC8 PE=2 SV=1	[more]
Q10205	1.5e-31	29.96	Exosome complex component rrp43 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]
Q8TYC2	5.6e-31	31.76	Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324...	[more]

BLAST of MS013799 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DFM7	3.7e-163	99.67	exosome complex component RRP43 OS=Momordica charantia OX=3673 GN=LOC111020008 P...	[more]
A0A1S3CEE1	6.8e-157	93.75	exosome complex component RRP43 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034995...	[more]
A0A1S3CD66	6.8e-157	93.75	exosome complex component RRP43 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034995...	[more]
A0A6J1ESF5	2.6e-156	94.41	exosome complex component RRP43 OS=Cucurbita moschata OX=3662 GN=LOC111435558 PE...	[more]
A0A6J1HVL5	1.7e-155	94.08	exosome complex component RRP43 OS=Cucurbita maxima OX=3661 GN=LOC111467240 PE=4...	[more]

BLAST of MS013799 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60080.1	1.4e-122	73.94	3'-5'-exoribonuclease family protein	[more]
AT3G07750.1	7.5e-23	30.31	3'-5'-exoribonuclease family protein	[more]
AT3G07750.2	7.5e-23	30.31	3'-5'-exoribonuclease family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	3.30.230.70		coord: 16..303 e-value: 5.3E-81 score: 274.0
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 48..181 e-value: 1.8E-21 score: 77.0
None	No IPR available	PANTHER	PTHR11097:SF28	SUBFAMILY NOT NAMED	coord: 14..304
None	No IPR available	PANTHER	PTHR11097	EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN	coord: 14..304
None	No IPR available	CDD	cd11369	RNase_PH_RRP43	coord: 21..294 e-value: 4.4078E-114 score: 327.977
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 18..243
IPR036345	Exoribonuclease, PH domain 2 superfamily	SUPERFAMILY	55666	Ribonuclease PH domain 2-like	coord: 215..298

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS013799.1	MS013799.1	mRNA