MS013703 (gene) Bitter gourd (TR) v1

Overview


Name	MS013703
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Nucleolar protein 16
Location	scaffold263: 284801 .. 285822 (-)
RNA-Seq Expression	MS013703
Synteny	MS013703

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGATCTCGCAGAAAGTACAAGAAATCTCGGCCAAAAGTCAGGGTCGGCCTTCCGAAGAGGAATCCCCAGGTTTTCAAGCCCTCCTTCTGCATGCCGCCCAAGCTCCGCTCCTTGCTCGCCGAACAATTTGAAGAACATCCCATCTGGGACGAAAAAGCCAGTGTAATTCACAATTACAAGTCCTTCGGCGTTCTTTCTAACCCCAATTTGCTCAGCGTTCGCTCCCGCACCGATCATATCGTCGAGAGCGACTCTCTCCAGGTTCCGCCGCCGTCTCTGCTGCCTTCCGGTGACCCTGATTCCGTTCTCGATCCCTCCGGTAGCGACGCGGAGGAGGACGGTGAGTTTGCTTCCCTTTCGCCGTCTCTTTGATTTTCTGCTCGTATGGTGTACCCCCTTTTGGATTTTGATGCAAACGGGAAGTATATTTGCTTGGATGAAATTTGTATGGTTAAATACTTGACATTGATGATTGTTTTGATGCCATGTTGCTACTGAGAATCAAATTGGTTGGATTCGTTGATCATTTGTAATCTTTTGCTGGATGGGTGTTTGTGAAATGAGAACAAACTTAAGAAATAGAATGATTGGCTTGGTTGGTTGTAATCTAATGTCTTATTGTCTGAAGGGTTATGAGGATTCTAAATTTTGAATTGTGTTACTGAGTTCATCTTGTGCTGGTCCTGTGTTCTTCATTTAGATTTGAAATCAGCACTGGGAAAGAAGCGGAAAGATGGGAAATCTGGGCCTCTAAAACCGTTGACCACGGTTCAGCGCGTTCATGTTGGTAGGCTAATTGAGAAATATGGAGACGATTACGAGGTAAGCTTCGGTTATACTTGCTTGCTCGCTCTTAGAACTGCATAATTCGCTTTCGTCACACTGATAATTGTGTTCTGCAGAGGATGTTCATGGATACAAAGCTGAACTCGATGCAGCATTCTGTTGCTACTCTGGAGAAACTTTGCAAAAGATATCACTCTTGTCCAGATAAGAATCCGTTGATATTGACCCGT

mRNA sequence

ATGGGAAGATCTCGCAGAAAGTACAAGAAATCTCGGCCAAAAGTCAGGGTCGGCCTTCCGAAGAGGAATCCCCAGGTTTTCAAGCCCTCCTTCTGCATGCCGCCCAAGCTCCGCTCCTTGCTCGCCGAACAATTTGAAGAACATCCCATCTGGGACGAAAAAGCCAGTGTAATTCACAATTACAAGTCCTTCGGCGTTCTTTCTAACCCCAATTTGCTCAGCGTTCGCTCCCGCACCGATCATATCGTCGAGAGCGACTCTCTCCAGGTTCCGCCGCCGTCTCTGCTGCCTTCCGGTGACCCTGATTCCGTTCTCGATCCCTCCGGTAGCGACGCGGAGGAGGACGATTTGAAATCAGCACTGGGAAAGAAGCGGAAAGATGGGAAATCTGGGCCTCTAAAACCGTTGACCACGGTTCAGCGCGTTCATGTTGGTAGGCTAATTGAGAAATATGGAGACGATTACGAGAGGATGTTCATGGATACAAAGCTGAACTCGATGCAGCATTCTGTTGCTACTCTGGAGAAACTTTGCAAAAGATATCACTCTTGTCCAGATAAGAATCCGTTGATATTGACCCGT

Coding sequence (CDS)

ATGGGAAGATCTCGCAGAAAGTACAAGAAATCTCGGCCAAAAGTCAGGGTCGGCCTTCCGAAGAGGAATCCCCAGGTTTTCAAGCCCTCCTTCTGCATGCCGCCCAAGCTCCGCTCCTTGCTCGCCGAACAATTTGAAGAACATCCCATCTGGGACGAAAAAGCCAGTGTAATTCACAATTACAAGTCCTTCGGCGTTCTTTCTAACCCCAATTTGCTCAGCGTTCGCTCCCGCACCGATCATATCGTCGAGAGCGACTCTCTCCAGGTTCCGCCGCCGTCTCTGCTGCCTTCCGGTGACCCTGATTCCGTTCTCGATCCCTCCGGTAGCGACGCGGAGGAGGACGATTTGAAATCAGCACTGGGAAAGAAGCGGAAAGATGGGAAATCTGGGCCTCTAAAACCGTTGACCACGGTTCAGCGCGTTCATGTTGGTAGGCTAATTGAGAAATATGGAGACGATTACGAGAGGATGTTCATGGATACAAAGCTGAACTCGATGCAGCATTCTGTTGCTACTCTGGAGAAACTTTGCAAAAGATATCACTCTTGTCCAGATAAGAATCCGTTGATATTGACCCGT

Protein sequence

MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGDPDSVLDPSGSDAEEDDLKSALGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCPDKNPLILTR

Homology

[Close]

BLAST of MS013703 vs. NCBI nr
Match: XP_022151256.1 (nucleolar protein 16 [Momordica charantia])

HSP 1 Score: 392.9 bits (1008), Expect = 1.6e-105
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 1   MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHN 60
           MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHN
Sbjct: 1   MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGDPDSVLDPSGSDAEEDDLKSA 120
           YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGDPDSVLDPSGSDAEEDDLKSA
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGDPDSVLDPSGSDAEEDDLKSA 120

Query: 121 LGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKR 180
           LGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKR
Sbjct: 121 LGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKR 180

Query: 181 YHSCPDKNPLILTR 195
           YHSCPDKNPLILTR
Sbjct: 181 YHSCPDKNPLILTR 194

[Close]

BLAST of MS013703 vs. NCBI nr
Match: XP_022991747.1 (uncharacterized protein LOC111488281 [Cucurbita maxima])

HSP 1 Score: 353.2 bits (905), Expect = 1.4e-93
Identity = 178/194 (91.75%), Postives = 183/194 (94.33%), Query Frame = 0


Query: 1   MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHN 60
           MGRSRRKYK+SR KV+VGLPKRNP VFKPSFCMPPKLRSLLAEQFEE P WDEKASVIHN
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGDPDSVLDPSGSDAEEDDLKSA 120
           YKSFGVLSNPNLLSVRSRTDHIVESDSLQV PPSL PS DPDSVLD SGSD EEDDLK+A
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQV-PPSLPPSDDPDSVLDSSGSDVEEDDLKTA 120

Query: 121 LGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKR 180
           LGKKRKDGKS PLKPLTT+QRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKR
Sbjct: 121 LGKKRKDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKR 180

Query: 181 YHSCPDKNPLILTR 195
           YHSC DKNPLILTR
Sbjct: 181 YHSCLDKNPLILTR 193

[Close]

BLAST of MS013703 vs. NCBI nr
Match: XP_023547523.1 (uncharacterized protein LOC111806441 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 351.3 bits (900), Expect = 5.4e-93
Identity = 177/194 (91.24%), Postives = 182/194 (93.81%), Query Frame = 0


Query: 1   MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHN 60
           MGRSRRKYK+SR KV+VGLPKRNP VFKPSFCMPPKLRSLLAEQFEE P WDEKASVIHN
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGDPDSVLDPSGSDAEEDDLKSA 120
           YKSFGVLSNPNLLSVRSRTDHIVESDSLQV PPSL PS DPDSVLD SGSD EEDDLK+A
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQV-PPSLPPSDDPDSVLDSSGSDVEEDDLKTA 120

Query: 121 LGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKR 180
           LGKKRKDGKS PLKPLTT+QRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKR
Sbjct: 121 LGKKRKDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKR 180

Query: 181 YHSCPDKNPLILTR 195
           YH C DKNPLILTR
Sbjct: 181 YHCCLDKNPLILTR 193

[Close]

BLAST of MS013703 vs. NCBI nr
Match: XP_022954094.1 (uncharacterized protein LOC111456462 [Cucurbita moschata] >KAG6575834.1 hypothetical protein SDJN03_26473, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 349.7 bits (896), Expect = 1.6e-92
Identity = 176/194 (90.72%), Postives = 182/194 (93.81%), Query Frame = 0


Query: 1   MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHN 60
           MGRSRRKYK+SR KV+VGLPKRNP VFKPSFCMPPKLRSLLAEQFEE P WDEKASVIHN
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGDPDSVLDPSGSDAEEDDLKSA 120
           YKSFGVLSNPNLLSVRSRTDHIVESD LQV PPSL PS DPDSVLD SGSD EEDDLK+A
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQV-PPSLPPSDDPDSVLDSSGSDVEEDDLKTA 120

Query: 121 LGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKR 180
           LGKKR+DGKS PLKPLTT+QRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKR
Sbjct: 121 LGKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKR 180

Query: 181 YHSCPDKNPLILTR 195
           YHSC DKNPLILTR
Sbjct: 181 YHSCLDKNPLILTR 193

[Close]

BLAST of MS013703 vs. NCBI nr
Match: KAG7014368.1 (hypothetical protein SDJN02_24545, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 346.3 bits (887), Expect = 1.7e-91
Identity = 175/194 (90.21%), Postives = 181/194 (93.30%), Query Frame = 0


Query: 1   MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHN 60
           MGRSRRKYK+SR KV+VGLPKRNP VFKPSFCMPPKLRSLLAEQFEE P WDEKASVIHN
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGDPDSVLDPSGSDAEEDDLKSA 120
           YKSFGVLSNPNLLSVRSRTDHIVESD LQV PPSL PS DPDSVLD SGSD EEDDLK+A
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQV-PPSLPPSDDPDSVLDSSGSDVEEDDLKTA 120

Query: 121 LGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKR 180
           LGKKR+ GKS PLKPLTT+QRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKR
Sbjct: 121 LGKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKR 180

Query: 181 YHSCPDKNPLILTR 195
           YHSC DKNPLILTR
Sbjct: 181 YHSCLDKNPLILTR 193

[Close]

BLAST of MS013703 vs. ExPASy TrEMBL
Match: A0A6J1DE29 (Nucleolar protein 16 OS=Momordica charantia OX=3673 GN=LOC111019220 PE=3 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 7.8e-106
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 1   MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHN 60
           MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHN
Sbjct: 1   MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGDPDSVLDPSGSDAEEDDLKSA 120
           YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGDPDSVLDPSGSDAEEDDLKSA
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGDPDSVLDPSGSDAEEDDLKSA 120

Query: 121 LGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKR 180
           LGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKR
Sbjct: 121 LGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKR 180

Query: 181 YHSCPDKNPLILTR 195
           YHSCPDKNPLILTR
Sbjct: 181 YHSCPDKNPLILTR 194

[Close]

BLAST of MS013703 vs. ExPASy TrEMBL
Match: A0A6J1JMQ4 (Nucleolar protein 16 OS=Cucurbita maxima OX=3661 GN=LOC111488281 PE=3 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 6.9e-94
Identity = 178/194 (91.75%), Postives = 183/194 (94.33%), Query Frame = 0


Query: 1   MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHN 60
           MGRSRRKYK+SR KV+VGLPKRNP VFKPSFCMPPKLRSLLAEQFEE P WDEKASVIHN
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGDPDSVLDPSGSDAEEDDLKSA 120
           YKSFGVLSNPNLLSVRSRTDHIVESDSLQV PPSL PS DPDSVLD SGSD EEDDLK+A
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQV-PPSLPPSDDPDSVLDSSGSDVEEDDLKTA 120

Query: 121 LGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKR 180
           LGKKRKDGKS PLKPLTT+QRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKR
Sbjct: 121 LGKKRKDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKR 180

Query: 181 YHSCPDKNPLILTR 195
           YHSC DKNPLILTR
Sbjct: 181 YHSCLDKNPLILTR 193

[Close]

BLAST of MS013703 vs. ExPASy TrEMBL
Match: A0A6J1GRW5 (Nucleolar protein 16 OS=Cucurbita moschata OX=3662 GN=LOC111456462 PE=3 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 7.6e-93
Identity = 176/194 (90.72%), Postives = 182/194 (93.81%), Query Frame = 0


Query: 1   MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHN 60
           MGRSRRKYK+SR KV+VGLPKRNP VFKPSFCMPPKLRSLLAEQFEE P WDEKASVIHN
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGDPDSVLDPSGSDAEEDDLKSA 120
           YKSFGVLSNPNLLSVRSRTDHIVESD LQV PPSL PS DPDSVLD SGSD EEDDLK+A
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQV-PPSLPPSDDPDSVLDSSGSDVEEDDLKTA 120

Query: 121 LGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKR 180
           LGKKR+DGKS PLKPLTT+QRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKR
Sbjct: 121 LGKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKR 180

Query: 181 YHSCPDKNPLILTR 195
           YHSC DKNPLILTR
Sbjct: 181 YHSCLDKNPLILTR 193

[Close]

BLAST of MS013703 vs. ExPASy TrEMBL
Match: A0A5A7VLA5 (Nucleolar protein 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00570 PE=3 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 7.1e-91
Identity = 172/194 (88.66%), Postives = 179/194 (92.27%), Query Frame = 0


Query: 1   MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHN 60
           MGRSRRKYKKSRPKV+VGLPKRNP VFKPSFCMPPKLRSLLAEQFEE P WDEK SVI N
Sbjct: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGDPDSVLDPSGSDAEEDDLKSA 120
           YKSFGV+SNPNLLSVRSRTDHIVESDSLQVP     PS DPDSVLD SGSD EEDDLK+A
Sbjct: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVP-----PSDDPDSVLDSSGSDVEEDDLKTA 120

Query: 121 LGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKR 180
           LGKKRKDGKS PL+PLTT+QRVHVG+LIEKYGDDY+RMFMDTKLNSMQHSVATLEKLCKR
Sbjct: 121 LGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKR 180

Query: 181 YHSCPDKNPLILTR 195
           YHSC DKNPLILTR
Sbjct: 181 YHSCLDKNPLILTR 189

[Close]

BLAST of MS013703 vs. ExPASy TrEMBL
Match: A0A1S3BSM4 (Nucleolar protein 16 OS=Cucumis melo OX=3656 GN=LOC103492822 PE=3 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 7.1e-91
Identity = 172/194 (88.66%), Postives = 179/194 (92.27%), Query Frame = 0


Query: 1   MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHN 60
           MGRSRRKYKKSRPKV+VGLPKRNP VFKPSFCMPPKLRSLLAEQFEE P WDEK SVI N
Sbjct: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGDPDSVLDPSGSDAEEDDLKSA 120
           YKSFGV+SNPNLLSVRSRTDHIVESDSLQVP     PS DPDSVLD SGSD EEDDLK+A
Sbjct: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVP-----PSDDPDSVLDSSGSDVEEDDLKTA 120

Query: 121 LGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKR 180
           LGKKRKDGKS PL+PLTT+QRVHVG+LIEKYGDDY+RMFMDTKLNSMQHSVATLEKLCKR
Sbjct: 121 LGKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKR 180

Query: 181 YHSCPDKNPLILTR 195
           YHSC DKNPLILTR
Sbjct: 181 YHSCLDKNPLILTR 189

[Close]

BLAST of MS013703 vs. TAIR 10
Match: AT1G02870.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome biogenesis protein Nop16 (InterPro:IPR019002); Has 104 Blast hits to 104 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). )

HSP 1 Score: 246.5 bits (628), Expect = 1.7e-65
Identity = 123/196 (62.76%), Postives = 154/196 (78.57%), Query Frame = 0


Query: 1   MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHN 60
           M RSRRKY+ SR KVRV LPK+NP +FKP+F  PPKLR+L+    ++ P WD++ASVI N
Sbjct: 1   MARSRRKYRNSRAKVRVALPKKNPNIFKPAFNFPPKLRALMG---DDVPEWDDQASVIQN 60

Query: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGDP-DSVLDP--SGSDAEEDDL 120
           YKSFGV+SNPNLL +R+RTDH+++ DSL VPPP   P+ DP     +P  SGS+ EEDDL
Sbjct: 61  YKSFGVISNPNLLGIRARTDHMIQDDSLNVPPPVEPPTDDPIAKEFEPIDSGSELEEDDL 120

Query: 121 KSALGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKL 180
           K+ALGK+RKDGKS PL+PLTT+QR H+ RL+EK+GDD E M+ D KLNSMQHSVATL KL
Sbjct: 121 KTALGKQRKDGKSAPLQPLTTMQRTHIRRLVEKHGDDIEGMYRDRKLNSMQHSVATLRKL 180

Query: 181 CKRYHSCPDKNPLILT 194
           C RY    DKNP++++
Sbjct: 181 CTRYQIYKDKNPILVS 193

The following BLAST results are available for this feature:

BLAST of MS013703 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151256.1	1.6e-105	100.00	nucleolar protein 16 [Momordica charantia]	[more]
XP_022991747.1	1.4e-93	91.75	uncharacterized protein LOC111488281 [Cucurbita maxima]	[more]
XP_023547523.1	5.4e-93	91.24	uncharacterized protein LOC111806441 [Cucurbita pepo subsp. pepo]	[more]
XP_022954094.1	1.6e-92	90.72	uncharacterized protein LOC111456462 [Cucurbita moschata] >KAG6575834.1 hypothet...	[more]
KAG7014368.1	1.7e-91	90.21	hypothetical protein SDJN02_24545, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of MS013703 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS013703 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DE29	7.8e-106	100.00	Nucleolar protein 16 OS=Momordica charantia OX=3673 GN=LOC111019220 PE=3 SV=1	[more]
A0A6J1JMQ4	6.9e-94	91.75	Nucleolar protein 16 OS=Cucurbita maxima OX=3661 GN=LOC111488281 PE=3 SV=1	[more]
A0A6J1GRW5	7.6e-93	90.72	Nucleolar protein 16 OS=Cucurbita moschata OX=3662 GN=LOC111456462 PE=3 SV=1	[more]
A0A5A7VLA5	7.1e-91	88.66	Nucleolar protein 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411...	[more]
A0A1S3BSM4	7.1e-91	88.66	Nucleolar protein 16 OS=Cucumis melo OX=3656 GN=LOC103492822 PE=3 SV=1	[more]

BLAST of MS013703 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02870.1	1.7e-65	62.76	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019002	Ribosome biogenesis protein Nop16	PFAM	PF09420	Nop16	coord: 114..182 e-value: 6.6E-17 score: 62.3
IPR019002	Ribosome biogenesis protein Nop16	PANTHER	PTHR13243	HSPC111 PROTEIN-RELATED	coord: 1..185
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS013703.1	MS013703.1	mRNA