MS013610 (gene) Bitter gourd (TR) v1

Overview


Name	MS013610
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	E3 ubiquitin-protein ligase RMA1H1-like
Location	scaffold402: 2818315 .. 2819034 (+)
RNA-Seq Expression	MS013610
Synteny	MS013610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTTTGAGCACTACCTTTCGCATGGCTGGAGGAAGCAGGTTCCAGCTGCAATGGCAAACTCTGAGAACTTTAAGGCTTGCTTTGACTGCAGTATTTGCTTAGACTTTGCATCTGAGCCTATAGTGACTCTGTGCGGCCATCTCTACTGCTGGCCTTGCATTTACAAGTGGCTTCATGTCCAGAGCGCCTCCCTCGGCCCTGACGAGCCTCCGCAGTGCCCGGTTTGCAAGGCCGATATTTCCCACACGAAAATGATCCCTCTCTACGGCCATGGTCAATCGGCAGAGGATGATGAGGTTGATGCCAAAGAGTTACTTATACCTCCTAGGCCATCAGCTTTTGGCGACAAGGCTCTGGGATCTATCAGATCTAATAATGCTTCTGGTCAGCACCTTCCTTATAGAAACCCATATCAGAATCAAAGCTACAACTTTGATCCGTATGACAGCTTTGAAGAGGACTCGAGCAGTTCGTTATTTAACCTCGAACACGACCCAGCCGATAGTTTTCATCATCCAGTGGCCAGGATGTTTGGAGAGATGGTGTATACTAGGATGTTTGGGAATTCAGAGGGCTTATACACATACCCGAATTCTTATCCTCAGACCGGGAGCAGCAGTCCGCGATTGAGAAGGCAGGAAATGCTAGCAGAGAAATCGCTTAACAGGATATCATTTTCTCTCTTCTGTTGCTTAGTTCTATGTCTTATTATCTTC

mRNA sequence

ATGGCCTTTGAGCACTACCTTTCGCATGGCTGGAGGAAGCAGGTTCCAGCTGCAATGGCAAACTCTGAGAACTTTAAGGCTTGCTTTGACTGCAGTATTTGCTTAGACTTTGCATCTGAGCCTATAGTGACTCTGTGCGGCCATCTCTACTGCTGGCCTTGCATTTACAAGTGGCTTCATGTCCAGAGCGCCTCCCTCGGCCCTGACGAGCCTCCGCAGTGCCCGGTTTGCAAGGCCGATATTTCCCACACGAAAATGATCCCTCTCTACGGCCATGGTCAATCGGCAGAGGATGATGAGGTTGATGCCAAAGAGTTACTTATACCTCCTAGGCCATCAGCTTTTGGCGACAAGGCTCTGGGATCTATCAGATCTAATAATGCTTCTGGTCAGCACCTTCCTTATAGAAACCCATATCAGAATCAAAGCTACAACTTTGATCCGTATGACAGCTTTGAAGAGGACTCGAGCAGTTCGTTATTTAACCTCGAACACGACCCAGCCGATAGTTTTCATCATCCAGTGGCCAGGATGTTTGGAGAGATGGTGTATACTAGGATGTTTGGGAATTCAGAGGGCTTATACACATACCCGAATTCTTATCCTCAGACCGGGAGCAGCAGTCCGCGATTGAGAAGGCAGGAAATGCTAGCAGAGAAATCGCTTAACAGGATATCATTTTCTCTCTTCTGTTGCTTAGTTCTATGTCTTATTATCTTC

Coding sequence (CDS)

ATGGCCTTTGAGCACTACCTTTCGCATGGCTGGAGGAAGCAGGTTCCAGCTGCAATGGCAAACTCTGAGAACTTTAAGGCTTGCTTTGACTGCAGTATTTGCTTAGACTTTGCATCTGAGCCTATAGTGACTCTGTGCGGCCATCTCTACTGCTGGCCTTGCATTTACAAGTGGCTTCATGTCCAGAGCGCCTCCCTCGGCCCTGACGAGCCTCCGCAGTGCCCGGTTTGCAAGGCCGATATTTCCCACACGAAAATGATCCCTCTCTACGGCCATGGTCAATCGGCAGAGGATGATGAGGTTGATGCCAAAGAGTTACTTATACCTCCTAGGCCATCAGCTTTTGGCGACAAGGCTCTGGGATCTATCAGATCTAATAATGCTTCTGGTCAGCACCTTCCTTATAGAAACCCATATCAGAATCAAAGCTACAACTTTGATCCGTATGACAGCTTTGAAGAGGACTCGAGCAGTTCGTTATTTAACCTCGAACACGACCCAGCCGATAGTTTTCATCATCCAGTGGCCAGGATGTTTGGAGAGATGGTGTATACTAGGATGTTTGGGAATTCAGAGGGCTTATACACATACCCGAATTCTTATCCTCAGACCGGGAGCAGCAGTCCGCGATTGAGAAGGCAGGAAATGCTAGCAGAGAAATCGCTTAACAGGATATCATTTTCTCTCTTCTGTTGCTTAGTTCTATGTCTTATTATCTTC

Protein sequence

MAFEHYLSHGWRKQVPAAMANSENFKACFDCSICLDFASEPIVTLCGHLYCWPCIYKWLHVQSASLGPDEPPQCPVCKADISHTKMIPLYGHGQSAEDDEVDAKELLIPPRPSAFGDKALGSIRSNNASGQHLPYRNPYQNQSYNFDPYDSFEEDSSSSLFNLEHDPADSFHHPVARMFGEMVYTRMFGNSEGLYTYPNSYPQTGSSSPRLRRQEMLAEKSLNRISFSLFCCLVLCLIIF

Homology

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BLAST of MS013610 vs. NCBI nr
Match: XP_022140107.1 (E3 ubiquitin-protein ligase RMA1H1-like [Momordica charantia])

HSP 1 Score: 500.0 bits (1286), Expect = 1.2e-137
Identity = 237/240 (98.75%), Postives = 238/240 (99.17%), Query Frame = 0


Query: 1   MAFEHYLSHGWRKQVPAAMANSENFKACFDCSICLDFASEPIVTLCGHLYCWPCIYKWLH 60
           MAFEHYLSHGWRKQVPAAMANSENFKACFDCSICLDFASEPIVTLCGHLYCWPCIYKWLH
Sbjct: 1   MAFEHYLSHGWRKQVPAAMANSENFKACFDCSICLDFASEPIVTLCGHLYCWPCIYKWLH 60

Query: 61  VQSASLGPDEPPQCPVCKADISHTKMIPLYGHGQSAEDDEVDAKELLIPPRPSAFGDKAL 120
           VQSASLGPDEPPQCPVCKADISHT MIPLYGHGQSAEDDEVDAKELLIPPRPSAFGDKAL
Sbjct: 61  VQSASLGPDEPPQCPVCKADISHTTMIPLYGHGQSAEDDEVDAKELLIPPRPSAFGDKAL 120

Query: 121 GSIRSNNASGQHLPYRNPYQNQSYNFDPYDSFEEDSSSSLFNLEHDPADSFHHPVARMFG 180
           GSIRSNNASGQHLPYRNPYQNQSYNFDPYDS+EEDSSSSLFNLEHDPADSFHHPVARMFG
Sbjct: 121 GSIRSNNASGQHLPYRNPYQNQSYNFDPYDSYEEDSSSSLFNLEHDPADSFHHPVARMFG 180

Query: 181 EMVYTRMFGNSEGLYTYPNSYPQTGSSSPRLRRQEMLAEKSLNRISFSLFCCLVLCLIIF 240
           EMVYTRMFGNSEGLYTYPNSYPQTGSSSPRLRRQEMLAEKSLNRISFSLFCCLVL LIIF
Sbjct: 181 EMVYTRMFGNSEGLYTYPNSYPQTGSSSPRLRRQEMLAEKSLNRISFSLFCCLVLSLIIF 240

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BLAST of MS013610 vs. NCBI nr
Match: XP_038895713.1 (E3 ubiquitin-protein ligase RMA1H1-like [Benincasa hispida])

HSP 1 Score: 395.6 bits (1015), Expect = 3.1e-106
Identity = 187/240 (77.92%), Postives = 204/240 (85.00%), Query Frame = 0


Query: 1   MAFEHYLSHGWRKQVPAAMANSENFKACFDCSICLDFASEPIVTLCGHLYCWPCIYKWLH 60
           MAFEHY  HGWR+QVPAAMANSE FK CFDC+ICLDFASEPIVTLCGHLYCWPCIYKWLH
Sbjct: 1   MAFEHYFPHGWRRQVPAAMANSEKFKPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWLH 60

Query: 61  VQSASLGPDEPPQCPVCKADISHTKMIPLYGHGQSAEDDEVDAKELLIPPRPSAFGDKAL 120
           VQSASL PDEPPQCPVCKA+ISHT M+PLYG GQSAED EVDA+ LLIPPRPSAFG+KAL
Sbjct: 61  VQSASLTPDEPPQCPVCKANISHTTMVPLYGRGQSAEDAEVDARGLLIPPRPSAFGNKAL 120

Query: 121 GSIRSNNASGQHLPYRNPYQNQSYNFDPYDSFEEDSSSSLFNLEHDPADSFHHPVARMFG 180
            +IRSN ASGQ   Y + YQNQ YNFD YDS+EEDSSSSLFNLE     S HHP A MF 
Sbjct: 121 ATIRSNTASGQQFAYGDLYQNQIYNFDMYDSYEEDSSSSLFNLEDSSVGSLHHPTAGMFT 180

Query: 181 EMVYTRMFGNSEGLYTYPNSYPQTGSSSPRLRRQEMLAEKSLNRISFSLFCCLVLCLIIF 240
           E VY R FGNSE +YT+P+SY  +G+SSPRLRRQE+LAEKSLNRIS  LFCC VLCL++F
Sbjct: 181 ETVYARFFGNSENVYTHPSSYGPSGNSSPRLRRQEILAEKSLNRISIFLFCCFVLCLVVF 240

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BLAST of MS013610 vs. NCBI nr
Match: XP_008442466.1 (PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Cucumis melo] >XP_008442474.1 PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Cucumis melo] >XP_008442488.1 PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Cucumis melo] >KAA0056985.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucumis melo var. makuwa] >TYK26413.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucumis melo var. makuwa])

HSP 1 Score: 381.3 bits (978), Expect = 6.0e-102
Identity = 178/240 (74.17%), Postives = 202/240 (84.17%), Query Frame = 0


Query: 1   MAFEHYLSHGWRKQVPAAMANSENFKACFDCSICLDFASEPIVTLCGHLYCWPCIYKWLH 60
           MAFEHY SHGWRKQ+PA+MANSE FK CFDC+ICLDFASEPIVTLCGHLYCWPCIYKWLH
Sbjct: 1   MAFEHYFSHGWRKQIPASMANSEKFKPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWLH 60

Query: 61  VQSASLGPDEPPQCPVCKADISHTKMIPLYGHGQSAEDDEVDAKELLIPPRPSAFGDKAL 120
           VQSASL PDEPPQCPVCKADISHT M+PLYG GQSAE  E DA+  LIPPRPSAFG+KAL
Sbjct: 61  VQSASLAPDEPPQCPVCKADISHTTMVPLYGRGQSAEHAEDDARGTLIPPRPSAFGNKAL 120

Query: 121 GSIRSNNASGQHLPYRNPYQNQSYNFDPYDSFEEDSSSSLFNLEHDPADSFHHPVARMFG 180
            +IRSNNAS Q   Y +  QNQ+YNFD YDS+EEDS SSLF+LE +P  S HHP A + G
Sbjct: 121 ATIRSNNASSQQFAYGDLDQNQNYNFDVYDSYEEDSGSSLFSLEDNPVGSSHHPTAGLLG 180

Query: 181 EMVYTRMFGNSEGLYTYPNSYPQTGSSSPRLRRQEMLAEKSLNRISFSLFCCLVLCLIIF 240
             VY R++G+SE +Y +PNSY  +GS+SPRLRRQE++AEKSLNRISF LFCC +LCL +F
Sbjct: 181 GTVYGRLYGDSENVYRHPNSYGLSGSNSPRLRRQEIVAEKSLNRISFFLFCCFILCLAVF 240

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BLAST of MS013610 vs. NCBI nr
Match: XP_011653163.1 (E3 ubiquitin-protein ligase RMA1H1 [Cucumis sativus] >KGN64674.1 hypothetical protein Csa_013288 [Cucumis sativus])

HSP 1 Score: 374.8 bits (961), Expect = 5.6e-100
Identity = 174/240 (72.50%), Postives = 200/240 (83.33%), Query Frame = 0


Query: 1   MAFEHYLSHGWRKQVPAAMANSENFKACFDCSICLDFASEPIVTLCGHLYCWPCIYKWLH 60
           M FEHY SHGWRKQ+PA+M NSE FK CFDC+ICLDFAS+PIVTLCGHLYCWPCIYKWLH
Sbjct: 1   MGFEHYFSHGWRKQIPASMENSEKFKPCFDCNICLDFASDPIVTLCGHLYCWPCIYKWLH 60

Query: 61  VQSASLGPDEPPQCPVCKADISHTKMIPLYGHGQSAEDDEVDAKELLIPPRPSAFGDKAL 120
           VQSASL PDEPPQCPVCKA+ISHT M+PLYG GQSAE  EVDA+ +LIPPRPSAFG+KAL
Sbjct: 61  VQSASLAPDEPPQCPVCKANISHTTMVPLYGRGQSAEHAEVDARGMLIPPRPSAFGNKAL 120

Query: 121 GSIRSNNASGQHLPYRNPYQNQSYNFDPYDSFEEDSSSSLFNLEHDPADSFHHPVARMFG 180
            +IRSNNAS Q   Y +  QNQ+YNFD YDS+EEDS SSLF+LE +P  S HHP A M G
Sbjct: 121 ATIRSNNASSQQFAYGDLDQNQNYNFDVYDSYEEDSGSSLFSLEDNPVGSSHHPTAGMLG 180

Query: 181 EMVYTRMFGNSEGLYTYPNSYPQTGSSSPRLRRQEMLAEKSLNRISFSLFCCLVLCLIIF 240
           E VY R + +SE +Y +PNSY  +GS+SPRLRRQE++AEKSLN+I F LFCC +LCL +F
Sbjct: 181 ETVYGRFYWDSENIYRHPNSYGLSGSNSPRLRRQEIVAEKSLNKIYFFLFCCFLLCLAVF 240

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BLAST of MS013610 vs. NCBI nr
Match: XP_023519102.1 (E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita pepo subsp. pepo] >XP_023519103.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita pepo subsp. pepo] >XP_023519104.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 364.8 bits (935), Expect = 5.8e-97
Identity = 179/241 (74.27%), Postives = 198/241 (82.16%), Query Frame = 0


Query: 1   MAFEHYLSHGWRKQVPA-AMANSENFKACFDCSICLDFASEPIVTLCGHLYCWPCIYKWL 60
           MAFEHY S  WR+ VPA +M NSE FKACFDC+ICL+FASEPIVTLCGHLYCWPCIYKWL
Sbjct: 1   MAFEHYFSRRWRRCVPASSMENSEKFKACFDCNICLEFASEPIVTLCGHLYCWPCIYKWL 60

Query: 61  HVQSASLGPDEPPQCPVCKADISHTKMIPLYGHGQSAEDDEVDAKELLIPPRPSAFGDKA 120
           HVQSASL PDEPPQCPVCKADISHT M+PLYG GQSA++ EVD + LLIPPRPSAFG+K 
Sbjct: 61  HVQSASLLPDEPPQCPVCKADISHTTMVPLYGRGQSAKEAEVDPRGLLIPPRPSAFGNKV 120

Query: 121 LGSIRSNNASGQHLPYRNPYQNQSYNFDPYDSFEEDSSSSLFNLEHDPADSFHHPVARMF 180
           L SI SNNASG+ L Y + YQNQ+ NFD YDS+EEDSSSSLFN+E +P  SF HP ARMF
Sbjct: 121 LASIGSNNASGEQLVYGDLYQNQNDNFDMYDSYEEDSSSSLFNMEDNPVGSFGHPTARMF 180

Query: 181 GEMVYTRMFGNSEGLYTYPNSYPQTGSSSPRLRRQEMLAEKSLNRISFSLFCCLVLCLII 240
           GE VY R+FG+SE LY +PNSY  TGS SP+LR Q    EKSLNRIS  LFCC VLCL I
Sbjct: 181 GETVYGRLFGSSENLYAHPNSYALTGSGSPQLRMQ----EKSLNRISIFLFCCFVLCLAI 237

[Close]

BLAST of MS013610 vs. ExPASy Swiss-Prot
Match: Q6R567 (E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.9e-43
Identity = 108/228 (47.37%), Postives = 130/228 (57.02%), Query Frame = 0


Query: 23  ENFKACFDCSICLDFASEPIVTLCGHLYCWPCIYKWLHVQSASL--GPDEPPQCPVCKAD 82
           EN    FDC+ICLD   EP++TLCGHLYCWPCIYKW++ QS S      + PQCPVCKA+
Sbjct: 33  ENISGGFDCNICLDCVHEPVITLCGHLYCWPCIYKWIYFQSVSSENSDQQQPQCPVCKAE 92

Query: 83  ISHTKMIPLYGH-GQSAEDDEVDAKELLI-----PPRPSAFGDKALGSIRSNNASGQHLP 142
           +S   +IPLYG  GQS +  E  A  L I     PP P   G   L +  SN +    L 
Sbjct: 93  VSEKTLIPLYGRGGQSTKPSEGKAPNLGIVIPQRPPSPRCGGHFLLPTTDSNPS---QLL 152

Query: 143 YRNPYQNQSYNFDP-YDSFEEDSSSSLFNLEHDPADSFHHPVARMFGEMVYTRMFGNSE- 202
            R  YQ QS    P Y       SS + +     A+   H    M GE+ Y R+FGNS  
Sbjct: 153 QRRGYQQQSQTRQPAYQG--SYMSSPMLSPGGATANMLQH---SMIGEVAYARIFGNSST 212

Query: 203 GLYTYPNSYPQTGSSSPRLRRQEMLAEKSLNRISFSLFCCLVLCLIIF 241
            +YTYPNSY    SSSPR+RRQ   A++SL RI F LFCC V CLI+F
Sbjct: 213 TMYTYPNSYNLAISSSPRMRRQLSQADRSLGRICFFLFCCFVTCLILF 252

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BLAST of MS013610 vs. ExPASy Swiss-Prot
Match: Q8GUK7 (E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.2e-38
Identity = 95/232 (40.95%), Postives = 131/232 (56.47%), Query Frame = 0


Query: 17  AAMANSENFKACFDCSICLDFASEPIVTLCGHLYCWPCIYKWLHVQSASLGPDE-PPQCP 76
           A  A   N   CFDC+ICLD A +P+VTLCGHL+CWPCIYKWLHVQ +S+  D+    CP
Sbjct: 30  APTAGQANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQNNCP 89

Query: 77  VCKADISHTKMIPLYGHGQSAEDD-----EVDAKELLIP--PRPSAFGDKALGSIRSNNA 136
           VCK++I+ T ++PLYG G S+        + DA    IP  P PSA  +  + S  S N 
Sbjct: 90  VCKSNITITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRPAPSALRN-PITSASSLNP 149

Query: 137 SGQHLPYRNPYQNQSYNFDPYDSFEEDSSSSLFNLEHDPADSFHHPVARMFGEMVYTRMF 196
           S QH      + N  Y+   + + E    ++   +      SF +PV  MFG++VYTR+F
Sbjct: 150 SLQHQTLSPSFHNHQYSPRGFTTTESTDLANAVMM------SFLYPVIGMFGDLVYTRIF 209

Query: 197 GNSEGLYTYPNSYPQTGSSSPRLRRQEMLAEKSLNRISFSLFCCLVLCLIIF 241
           G      T+ N+  Q   S   ++R     EKSLNR+S    CC++LCL++F
Sbjct: 210 G------TFTNTIAQPYQSQRMMQR-----EKSLNRVSIFFLCCIILCLLLF 243

[Close]

BLAST of MS013610 vs. ExPASy Swiss-Prot
Match: O64425 (E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.5e-34
Identity = 85/215 (39.53%), Postives = 118/215 (54.88%), Query Frame = 0


Query: 29  FDCSICLDFASEPIVTLCGHLYCWPCIYKWLHVQSASLGPD--EPPQCPVCKADISHTKM 88
           FDC+ICLD   EP+VTLCGHL+CWPCI+KWL VQS S   +     QCPVCK+ +SH+ +
Sbjct: 46  FDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSHSTL 105

Query: 89  IPLYGHGQSAEDDEVDAKELLIPPRPSAFGDKALGSIRSNNASGQHLPYRNPYQNQSYNF 148
           +PLYG G+    +E    +  +P RP     +         ++   L  R  + +    +
Sbjct: 106 VPLYGRGRCTTQEE---GKNSVPKRPVGPVYRLEMPNSPYASTDLRLSQRVHFNSPQEGY 165

Query: 149 DPYDSFEEDSSSSLFNLEHDPADSFHHPVARMFGEMVYTRMFGNS-EGLYTYPNSYPQTG 208
            P       +S S          +   PV  M GEMV TR+FG      + YP++Y   G
Sbjct: 166 YPVSGVMSSNSLSY--------SAVLDPVMVMVGEMVATRLFGTRVMDRFAYPDTYNLAG 225

Query: 209 SSSPRLRRQEMLAEKSLNRISFSLFCCLVLCLIIF 241
           +S PR+RR+ M A+KSL RI F   CC+VLCL++F
Sbjct: 226 TSGPRMRRRIMQADKSLGRIFFFFMCCVVLCLLLF 249

[Close]

BLAST of MS013610 vs. ExPASy Swiss-Prot
Match: P93030 (E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.7e-25
Identity = 75/219 (34.25%), Postives = 105/219 (47.95%), Query Frame = 0


Query: 29  FDCSICLDFASEPIVTLCGHLYCWPCIYKWLHVQSASL-------GPDEPPQCPVCKADI 88
           FDC+ICLD   +P+VTLCGHL+CWPCI+KW +  + S           EPP+CPVCK+D+
Sbjct: 19  FDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDV 78

Query: 89  SHTKMIPLYGHGQSAEDDEVDAKELLIPPRPSAFGDKALGSIRSNNASGQHLPYRNPYQN 148
           S   ++P+YG GQ A     +     +P RP+       G +      GQ L      ++
Sbjct: 79  SEATLVPIYGRGQKAPQSGSN-----VPSRPT-------GPVYDLRGVGQRL---GEGES 138

Query: 149 QSYNFDPYDSFEEDSSSSLFNLEHDPADSFHHPVARMFGEMVYTRMFGNSEGLYTYPNSY 208
           Q Y +   D                       PV  +  EMVY R+FG S       N  
Sbjct: 139 QRYMYRMPD-----------------------PVMGVVCEMVYRRLFGESSS-----NMA 193

Query: 209 PQTGSSSPRLRRQEMLAEKSLNRISFSLFCCLVLCLIIF 241
           P     + R RR+ M AE+SL+R+   L C + +CL +F
Sbjct: 199 PYR-DMNVRSRRRAMQAEESLSRVYLFLLCFMFMCLFLF 193

[Close]

BLAST of MS013610 vs. ExPASy Swiss-Prot
Match: Q99942 (E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens OX=9606 GN=RNF5 PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.5e-18
Identity = 41/86 (47.67%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 27  ACFDCSICLDFASEPIVTLCGHLYCWPCIYKWLHVQSASLGPDEPPQCPVCKADISHTKM 86
           A F+C+ICL+ A E +V++CGHLYCWPC+++WL  +       E  +CPVCKA IS  K+
Sbjct: 23  ATFECNICLETAREAVVSVCGHLYCWPCLHQWLETR------PERQECPVCKAGISREKV 82

Query: 87  IPLYGHGQSAEDDEVDAKELLIPPRP 113
           +PLYG G     D      L  PPRP
Sbjct: 83  VPLYGRGSQKPQD----PRLKTPPRP 98

[Close]

BLAST of MS013610 vs. ExPASy TrEMBL
Match: A0A6J1CFW3 (E3 ubiquitin-protein ligase RMA1H1-like OS=Momordica charantia OX=3673 GN=LOC111010843 PE=4 SV=1)

HSP 1 Score: 500.0 bits (1286), Expect = 5.6e-138
Identity = 237/240 (98.75%), Postives = 238/240 (99.17%), Query Frame = 0


Query: 1   MAFEHYLSHGWRKQVPAAMANSENFKACFDCSICLDFASEPIVTLCGHLYCWPCIYKWLH 60
           MAFEHYLSHGWRKQVPAAMANSENFKACFDCSICLDFASEPIVTLCGHLYCWPCIYKWLH
Sbjct: 1   MAFEHYLSHGWRKQVPAAMANSENFKACFDCSICLDFASEPIVTLCGHLYCWPCIYKWLH 60

Query: 61  VQSASLGPDEPPQCPVCKADISHTKMIPLYGHGQSAEDDEVDAKELLIPPRPSAFGDKAL 120
           VQSASLGPDEPPQCPVCKADISHT MIPLYGHGQSAEDDEVDAKELLIPPRPSAFGDKAL
Sbjct: 61  VQSASLGPDEPPQCPVCKADISHTTMIPLYGHGQSAEDDEVDAKELLIPPRPSAFGDKAL 120

Query: 121 GSIRSNNASGQHLPYRNPYQNQSYNFDPYDSFEEDSSSSLFNLEHDPADSFHHPVARMFG 180
           GSIRSNNASGQHLPYRNPYQNQSYNFDPYDS+EEDSSSSLFNLEHDPADSFHHPVARMFG
Sbjct: 121 GSIRSNNASGQHLPYRNPYQNQSYNFDPYDSYEEDSSSSLFNLEHDPADSFHHPVARMFG 180

Query: 181 EMVYTRMFGNSEGLYTYPNSYPQTGSSSPRLRRQEMLAEKSLNRISFSLFCCLVLCLIIF 240
           EMVYTRMFGNSEGLYTYPNSYPQTGSSSPRLRRQEMLAEKSLNRISFSLFCCLVL LIIF
Sbjct: 181 EMVYTRMFGNSEGLYTYPNSYPQTGSSSPRLRRQEMLAEKSLNRISFSLFCCLVLSLIIF 240

[Close]

BLAST of MS013610 vs. ExPASy TrEMBL
Match: A0A1S3B6D8 (E3 ubiquitin-protein ligase RMA1H1-like OS=Cucumis melo OX=3656 GN=LOC103486320 PE=4 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 2.9e-102
Identity = 178/240 (74.17%), Postives = 202/240 (84.17%), Query Frame = 0


Query: 1   MAFEHYLSHGWRKQVPAAMANSENFKACFDCSICLDFASEPIVTLCGHLYCWPCIYKWLH 60
           MAFEHY SHGWRKQ+PA+MANSE FK CFDC+ICLDFASEPIVTLCGHLYCWPCIYKWLH
Sbjct: 1   MAFEHYFSHGWRKQIPASMANSEKFKPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWLH 60

Query: 61  VQSASLGPDEPPQCPVCKADISHTKMIPLYGHGQSAEDDEVDAKELLIPPRPSAFGDKAL 120
           VQSASL PDEPPQCPVCKADISHT M+PLYG GQSAE  E DA+  LIPPRPSAFG+KAL
Sbjct: 61  VQSASLAPDEPPQCPVCKADISHTTMVPLYGRGQSAEHAEDDARGTLIPPRPSAFGNKAL 120

Query: 121 GSIRSNNASGQHLPYRNPYQNQSYNFDPYDSFEEDSSSSLFNLEHDPADSFHHPVARMFG 180
            +IRSNNAS Q   Y +  QNQ+YNFD YDS+EEDS SSLF+LE +P  S HHP A + G
Sbjct: 121 ATIRSNNASSQQFAYGDLDQNQNYNFDVYDSYEEDSGSSLFSLEDNPVGSSHHPTAGLLG 180

Query: 181 EMVYTRMFGNSEGLYTYPNSYPQTGSSSPRLRRQEMLAEKSLNRISFSLFCCLVLCLIIF 240
             VY R++G+SE +Y +PNSY  +GS+SPRLRRQE++AEKSLNRISF LFCC +LCL +F
Sbjct: 181 GTVYGRLYGDSENVYRHPNSYGLSGSNSPRLRRQEIVAEKSLNRISFFLFCCFILCLAVF 240

[Close]

BLAST of MS013610 vs. ExPASy TrEMBL
Match: A0A5A7UTV8 (E3 ubiquitin-protein ligase RMA1H1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00770 PE=4 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 2.9e-102
Identity = 178/240 (74.17%), Postives = 202/240 (84.17%), Query Frame = 0


Query: 1   MAFEHYLSHGWRKQVPAAMANSENFKACFDCSICLDFASEPIVTLCGHLYCWPCIYKWLH 60
           MAFEHY SHGWRKQ+PA+MANSE FK CFDC+ICLDFASEPIVTLCGHLYCWPCIYKWLH
Sbjct: 1   MAFEHYFSHGWRKQIPASMANSEKFKPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWLH 60

Query: 61  VQSASLGPDEPPQCPVCKADISHTKMIPLYGHGQSAEDDEVDAKELLIPPRPSAFGDKAL 120
           VQSASL PDEPPQCPVCKADISHT M+PLYG GQSAE  E DA+  LIPPRPSAFG+KAL
Sbjct: 61  VQSASLAPDEPPQCPVCKADISHTTMVPLYGRGQSAEHAEDDARGTLIPPRPSAFGNKAL 120

Query: 121 GSIRSNNASGQHLPYRNPYQNQSYNFDPYDSFEEDSSSSLFNLEHDPADSFHHPVARMFG 180
            +IRSNNAS Q   Y +  QNQ+YNFD YDS+EEDS SSLF+LE +P  S HHP A + G
Sbjct: 121 ATIRSNNASSQQFAYGDLDQNQNYNFDVYDSYEEDSGSSLFSLEDNPVGSSHHPTAGLLG 180

Query: 181 EMVYTRMFGNSEGLYTYPNSYPQTGSSSPRLRRQEMLAEKSLNRISFSLFCCLVLCLIIF 240
             VY R++G+SE +Y +PNSY  +GS+SPRLRRQE++AEKSLNRISF LFCC +LCL +F
Sbjct: 181 GTVYGRLYGDSENVYRHPNSYGLSGSNSPRLRRQEIVAEKSLNRISFFLFCCFILCLAVF 240

[Close]

BLAST of MS013610 vs. ExPASy TrEMBL
Match: A0A0A0LUK5 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G073810 PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 2.7e-100
Identity = 174/240 (72.50%), Postives = 200/240 (83.33%), Query Frame = 0


Query: 1   MAFEHYLSHGWRKQVPAAMANSENFKACFDCSICLDFASEPIVTLCGHLYCWPCIYKWLH 60
           M FEHY SHGWRKQ+PA+M NSE FK CFDC+ICLDFAS+PIVTLCGHLYCWPCIYKWLH
Sbjct: 1   MGFEHYFSHGWRKQIPASMENSEKFKPCFDCNICLDFASDPIVTLCGHLYCWPCIYKWLH 60

Query: 61  VQSASLGPDEPPQCPVCKADISHTKMIPLYGHGQSAEDDEVDAKELLIPPRPSAFGDKAL 120
           VQSASL PDEPPQCPVCKA+ISHT M+PLYG GQSAE  EVDA+ +LIPPRPSAFG+KAL
Sbjct: 61  VQSASLAPDEPPQCPVCKANISHTTMVPLYGRGQSAEHAEVDARGMLIPPRPSAFGNKAL 120

Query: 121 GSIRSNNASGQHLPYRNPYQNQSYNFDPYDSFEEDSSSSLFNLEHDPADSFHHPVARMFG 180
            +IRSNNAS Q   Y +  QNQ+YNFD YDS+EEDS SSLF+LE +P  S HHP A M G
Sbjct: 121 ATIRSNNASSQQFAYGDLDQNQNYNFDVYDSYEEDSGSSLFSLEDNPVGSSHHPTAGMLG 180

Query: 181 EMVYTRMFGNSEGLYTYPNSYPQTGSSSPRLRRQEMLAEKSLNRISFSLFCCLVLCLIIF 240
           E VY R + +SE +Y +PNSY  +GS+SPRLRRQE++AEKSLN+I F LFCC +LCL +F
Sbjct: 181 ETVYGRFYWDSENIYRHPNSYGLSGSNSPRLRRQEIVAEKSLNKIYFFLFCCFLLCLAVF 240

[Close]

BLAST of MS013610 vs. ExPASy TrEMBL
Match: A0A6J1EJS4 (E3 ubiquitin-protein ligase RMA1H1-like OS=Cucurbita moschata OX=3662 GN=LOC111433961 PE=4 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 2.4e-96
Identity = 177/241 (73.44%), Postives = 197/241 (81.74%), Query Frame = 0


Query: 1   MAFEHYLSHGWRKQVPA-AMANSENFKACFDCSICLDFASEPIVTLCGHLYCWPCIYKWL 60
           MAFEHY S  WR+ VPA +M NSE FKACFDC+ICL+FASEPIVTLCGHLYCWPCIYKWL
Sbjct: 1   MAFEHYFSRRWRRCVPASSMENSEKFKACFDCNICLEFASEPIVTLCGHLYCWPCIYKWL 60

Query: 61  HVQSASLGPDEPPQCPVCKADISHTKMIPLYGHGQSAEDDEVDAKELLIPPRPSAFGDKA 120
           H+QSASL PDEPPQCPVCKADISHT M+PLYG  QSA++ EVD + LLIPPRPSAFG+K 
Sbjct: 61  HIQSASLLPDEPPQCPVCKADISHTTMVPLYGRDQSAKEAEVDPRGLLIPPRPSAFGNKV 120

Query: 121 LGSIRSNNASGQHLPYRNPYQNQSYNFDPYDSFEEDSSSSLFNLEHDPADSFHHPVARMF 180
           L SI SNNASG+ L Y + YQNQ+ NFD YDS+EEDSSSSLFN+E +P  SF HP ARMF
Sbjct: 121 LASIGSNNASGEQLVYGDLYQNQNDNFDMYDSYEEDSSSSLFNMEDNPVGSFGHPTARMF 180

Query: 181 GEMVYTRMFGNSEGLYTYPNSYPQTGSSSPRLRRQEMLAEKSLNRISFSLFCCLVLCLII 240
           GE VY R+FG+SE LY +PNSY  TGS SP+LR Q    EKSLNRIS  LFCC VLCL I
Sbjct: 181 GETVYGRLFGSSENLYAHPNSYALTGSGSPQLRMQ----EKSLNRISIFLFCCFVLCLAI 237

[Close]

BLAST of MS013610 vs. TAIR 10
Match: AT4G27470.1 (RING membrane-anchor 3 )

HSP 1 Score: 160.6 bits (405), Expect = 1.6e-39
Identity = 95/232 (40.95%), Postives = 131/232 (56.47%), Query Frame = 0


Query: 17  AAMANSENFKACFDCSICLDFASEPIVTLCGHLYCWPCIYKWLHVQSASLGPDE-PPQCP 76
           A  A   N   CFDC+ICLD A +P+VTLCGHL+CWPCIYKWLHVQ +S+  D+    CP
Sbjct: 30  APTAGQANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQNNCP 89

Query: 77  VCKADISHTKMIPLYGHGQSAEDD-----EVDAKELLIP--PRPSAFGDKALGSIRSNNA 136
           VCK++I+ T ++PLYG G S+        + DA    IP  P PSA  +  + S  S N 
Sbjct: 90  VCKSNITITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRPAPSALRN-PITSASSLNP 149

Query: 137 SGQHLPYRNPYQNQSYNFDPYDSFEEDSSSSLFNLEHDPADSFHHPVARMFGEMVYTRMF 196
           S QH      + N  Y+   + + E    ++   +      SF +PV  MFG++VYTR+F
Sbjct: 150 SLQHQTLSPSFHNHQYSPRGFTTTESTDLANAVMM------SFLYPVIGMFGDLVYTRIF 209

Query: 197 GNSEGLYTYPNSYPQTGSSSPRLRRQEMLAEKSLNRISFSLFCCLVLCLIIF 241
           G      T+ N+  Q   S   ++R     EKSLNR+S    CC++LCL++F
Sbjct: 210 G------TFTNTIAQPYQSQRMMQR-----EKSLNRVSIFFLCCIILCLLLF 243

[Close]

BLAST of MS013610 vs. TAIR 10
Match: AT4G03510.1 (RING membrane-anchor 1 )

HSP 1 Score: 147.9 bits (372), Expect = 1.0e-35
Identity = 85/215 (39.53%), Postives = 118/215 (54.88%), Query Frame = 0


Query: 29  FDCSICLDFASEPIVTLCGHLYCWPCIYKWLHVQSASLGPD--EPPQCPVCKADISHTKM 88
           FDC+ICLD   EP+VTLCGHL+CWPCI+KWL VQS S   +     QCPVCK+ +SH+ +
Sbjct: 46  FDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSHSTL 105

Query: 89  IPLYGHGQSAEDDEVDAKELLIPPRPSAFGDKALGSIRSNNASGQHLPYRNPYQNQSYNF 148
           +PLYG G+    +E    +  +P RP     +         ++   L  R  + +    +
Sbjct: 106 VPLYGRGRCTTQEE---GKNSVPKRPVGPVYRLEMPNSPYASTDLRLSQRVHFNSPQEGY 165

Query: 149 DPYDSFEEDSSSSLFNLEHDPADSFHHPVARMFGEMVYTRMFGNS-EGLYTYPNSYPQTG 208
            P       +S S          +   PV  M GEMV TR+FG      + YP++Y   G
Sbjct: 166 YPVSGVMSSNSLSY--------SAVLDPVMVMVGEMVATRLFGTRVMDRFAYPDTYNLAG 225

Query: 209 SSSPRLRRQEMLAEKSLNRISFSLFCCLVLCLIIF 241
           +S PR+RR+ M A+KSL RI F   CC+VLCL++F
Sbjct: 226 TSGPRMRRRIMQADKSLGRIFFFFMCCVVLCLLLF 249

[Close]

BLAST of MS013610 vs. TAIR 10
Match: AT4G03510.2 (RING membrane-anchor 1 )

HSP 1 Score: 147.9 bits (372), Expect = 1.0e-35
Identity = 85/215 (39.53%), Postives = 118/215 (54.88%), Query Frame = 0


Query: 29  FDCSICLDFASEPIVTLCGHLYCWPCIYKWLHVQSASLGPD--EPPQCPVCKADISHTKM 88
           FDC+ICLD   EP+VTLCGHL+CWPCI+KWL VQS S   +     QCPVCK+ +SH+ +
Sbjct: 46  FDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSHSTL 105

Query: 89  IPLYGHGQSAEDDEVDAKELLIPPRPSAFGDKALGSIRSNNASGQHLPYRNPYQNQSYNF 148
           +PLYG G+    +E    +  +P RP     +         ++   L  R  + +    +
Sbjct: 106 VPLYGRGRCTTQEE---GKNSVPKRPVGPVYRLEMPNSPYASTDLRLSQRVHFNSPQEGY 165

Query: 149 DPYDSFEEDSSSSLFNLEHDPADSFHHPVARMFGEMVYTRMFGNS-EGLYTYPNSYPQTG 208
            P       +S S          +   PV  M GEMV TR+FG      + YP++Y   G
Sbjct: 166 YPVSGVMSSNSLSY--------SAVLDPVMVMVGEMVATRLFGTRVMDRFAYPDTYNLAG 225

Query: 209 SSSPRLRRQEMLAEKSLNRISFSLFCCLVLCLIIF 241
           +S PR+RR+ M A+KSL RI F   CC+VLCL++F
Sbjct: 226 TSGPRMRRRIMQADKSLGRIFFFFMCCVVLCLLLF 249

[Close]

BLAST of MS013610 vs. TAIR 10
Match: AT4G28270.1 (RING membrane-anchor 2 )

HSP 1 Score: 116.3 bits (290), Expect = 3.4e-26
Identity = 75/219 (34.25%), Postives = 105/219 (47.95%), Query Frame = 0


Query: 29  FDCSICLDFASEPIVTLCGHLYCWPCIYKWLHVQSASL-------GPDEPPQCPVCKADI 88
           FDC+ICLD   +P+VTLCGHL+CWPCI+KW +  + S           EPP+CPVCK+D+
Sbjct: 19  FDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDV 78

Query: 89  SHTKMIPLYGHGQSAEDDEVDAKELLIPPRPSAFGDKALGSIRSNNASGQHLPYRNPYQN 148
           S   ++P+YG GQ A     +     +P RP+       G +      GQ L      ++
Sbjct: 79  SEATLVPIYGRGQKAPQSGSN-----VPSRPT-------GPVYDLRGVGQRL---GEGES 138

Query: 149 QSYNFDPYDSFEEDSSSSLFNLEHDPADSFHHPVARMFGEMVYTRMFGNSEGLYTYPNSY 208
           Q Y +   D                       PV  +  EMVY R+FG S       N  
Sbjct: 139 QRYMYRMPD-----------------------PVMGVVCEMVYRRLFGESSS-----NMA 193

Query: 209 PQTGSSSPRLRRQEMLAEKSLNRISFSLFCCLVLCLIIF 241
           P     + R RR+ M AE+SL+R+   L C + +CL +F
Sbjct: 199 PYR-DMNVRSRRRAMQAEESLSRVYLFLLCFMFMCLFLF 193

[Close]

BLAST of MS013610 vs. TAIR 10
Match: AT1G19310.1 (RING/U-box superfamily protein )

HSP 1 Score: 105.5 bits (262), Expect = 5.9e-23
Identity = 47/93 (50.54%), Postives = 62/93 (66.67%), Query Frame = 0


Query: 22  SENFKACFDCSICLDFASEPIVTLCGHLYCWPCIYKWLHVQSASLGPDEPPQCPVCKADI 81
           + N  + F+C+ICLD A +PIVTLCGHL+CWPC+YKWLH+ S S        CPVCKA I
Sbjct: 14  NNNDSSNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHLHSQS------KDCPVCKAVI 73

Query: 82  SHTKMIPLYGHGQSAEDDEVDA-KELLIPPRPS 114
              +++PLYG G+S+ D    +   L +P RPS
Sbjct: 74  EEDRLVPLYGRGKSSADPRSKSIPGLEVPNRPS 100

The following BLAST results are available for this feature:

BLAST of MS013610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140107.1	1.2e-137	98.75	E3 ubiquitin-protein ligase RMA1H1-like [Momordica charantia]	[more]
XP_038895713.1	3.1e-106	77.92	E3 ubiquitin-protein ligase RMA1H1-like [Benincasa hispida]	[more]
XP_008442466.1	6.0e-102	74.17	PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Cucumis melo] >XP_008442474....	[more]
XP_011653163.1	5.6e-100	72.50	E3 ubiquitin-protein ligase RMA1H1 [Cucumis sativus] >KGN64674.1 hypothetical pr...	[more]
XP_023519102.1	5.8e-97	74.27	E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita pepo subsp. pepo] >XP_0235191...	[more]

BLAST of MS013610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6R567	2.9e-43	47.37	E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=...	[more]
Q8GUK7	2.2e-38	40.95	E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV...	[more]
O64425	1.5e-34	39.53	E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV...	[more]
P93030	4.7e-25	34.25	E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV...	[more]
Q99942	2.5e-18	47.67	E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens OX=9606 GN=RNF5 PE=1 SV=1	[more]

BLAST of MS013610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CFW3	5.6e-138	98.75	E3 ubiquitin-protein ligase RMA1H1-like OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A1S3B6D8	2.9e-102	74.17	E3 ubiquitin-protein ligase RMA1H1-like OS=Cucumis melo OX=3656 GN=LOC103486320 ...	[more]
A0A5A7UTV8	2.9e-102	74.17	E3 ubiquitin-protein ligase RMA1H1-like OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0LUK5	2.7e-100	72.50	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G073810 P...	[more]
A0A6J1EJS4	2.4e-96	73.44	E3 ubiquitin-protein ligase RMA1H1-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of MS013610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G27470.1	1.6e-39	40.95	RING membrane-anchor 3	[more]
AT4G03510.1	1.0e-35	39.53	RING membrane-anchor 1	[more]
AT4G03510.2	1.0e-35	39.53	RING membrane-anchor 1	[more]
AT4G28270.1	3.4e-26	34.25	RING membrane-anchor 2	[more]
AT1G19310.1	5.9e-23	50.54	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 31..77 e-value: 2.5E-9 score: 47.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 31..78 score: 12.371254
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 8..109 e-value: 3.2E-17 score: 64.6
IPR018957	Zinc finger, C3HC4 RING-type	PFAM	PF00097	zf-C3HC4	coord: 31..77 e-value: 2.4E-8 score: 33.7
IPR045103	E3 ubiquitin-protein ligase RNF5/RNF185-like	PANTHER	PTHR12313	E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED	coord: 2..240
None	No IPR available	PANTHER	PTHR12313:SF6	E3 UBIQUITIN-PROTEIN LIGASE RMA3	coord: 2..240
None	No IPR available	CDD	cd16745	RING-HC_AtRMA_like	coord: 29..79 e-value: 2.54281E-24 score: 89.6707
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 25..90
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 46..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS013610.1	MS013610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005783	endoplasmic reticulum
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0061630	ubiquitin protein ligase activity