MS013574 (gene) Bitter gourd (TR) v1

Overview


Name	MS013574
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold402: 2541450 .. 2541797 (-)
RNA-Seq Expression	MS013574
Synteny	MS013574

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAGCTGGGATTCTACGTCGTCGTCTTGCTGCTACTTCTTCCAGCTTCAACGCTGGAGGCTCGTAATTTGATTGGTCCAAAAAAATCAGAAGAAGATAACGCCGCAAAGTTGTTAAGCCCAGCATTAGTGGCCAGAATCGCCAGGGAAATCTTCAGACCCATTAAGAAACCCGACACCCACTTCCCCATCGGGGTCAACCCGAGTTCGAAGCCGACGGAAGCAAACCCATCCCTGACCCGAATCGTCAGGGAAGTATCTCGACTGGGCAATGAATATGCCAAGAAGAACCCCACCTACTACCCGACCCGATTAAGTCCCGGCGGCCCCGACCCGCACCACCAT

mRNA sequence

ATGGCCAAGCTGGGATTCTACGTCGTCGTCTTGCTGCTACTTCTTCCAGCTTCAACGCTGGAGGCTCGTAATTTGATTGGTCCAAAAAAATCAGAAGAAGATAACGCCGCAAAGTTGTTAAGCCCAGCATTAGTGGCCAGAATCGCCAGGGAAATCTTCAGACCCATTAAGAAACCCGACACCCACTTCCCCATCGGGGTCAACCCGAGTTCGAAGCCGACGGAAGCAAACCCATCCCTGACCCGAATCGTCAGGGAAGTATCTCGACTGGGCAATGAATATGCCAAGAAGAACCCCACCTACTACCCGACCCGATTAAGTCCCGGCGGCCCCGACCCGCACCACCAT

Coding sequence (CDS)

ATGGCCAAGCTGGGATTCTACGTCGTCGTCTTGCTGCTACTTCTTCCAGCTTCAACGCTGGAGGCTCGTAATTTGATTGGTCCAAAAAAATCAGAAGAAGATAACGCCGCAAAGTTGTTAAGCCCAGCATTAGTGGCCAGAATCGCCAGGGAAATCTTCAGACCCATTAAGAAACCCGACACCCACTTCCCCATCGGGGTCAACCCGAGTTCGAAGCCGACGGAAGCAAACCCATCCCTGACCCGAATCGTCAGGGAAGTATCTCGACTGGGCAATGAATATGCCAAGAAGAACCCCACCTACTACCCGACCCGATTAAGTCCCGGCGGCCCCGACCCGCACCACCAT

Protein sequence

MAKLGFYVVVLLLLLPASTLEARNLIGPKKSEEDNAAKLLSPALVARIAREIFRPIKKPDTHFPIGVNPSSKPTEANPSLTRIVREVSRLGNEYAKKNPTYYPTRLSPGGPDPHHH

Homology

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BLAST of MS013574 vs. NCBI nr
Match: KAG6583968.1 (hypothetical protein SDJN03_19900, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100.1 bits (248), Expect = 1.3e-17
Identity = 59/116 (50.86%), Postives = 75/116 (64.66%), Query Frame = 0


Query: 1   MAKLGFYVVVLLLLLPASTLEARNLIGPKKSEEDNAAKLLSPALVARIAREIFRPIKKPD 60
           MA LGF V++ +LL+  STL+AR LIGPK     N+   +  + + RIAR          
Sbjct: 1   MAHLGFCVLIFILLVSPSTLQARTLIGPK-----NSKFTIPISHITRIAR---------- 60

Query: 61  THFPIGVNPSSKPTEANPSLTRIVREVSRLGNEYAKKNPTYYPTRLSPGGPDPHHH 117
             F I +NPS   T++NP+LTR+  E+SRLGNE+AKK   Y PTRLSPGGPDPHHH
Sbjct: 61  -FFAIPINPSQSSTKSNPALTRMATEISRLGNEHAKKF-GYKPTRLSPGGPDPHHH 99

The following BLAST results are available for this feature:

BLAST of MS013574 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6583968.1	1.3e-17	50.86	hypothetical protein SDJN03_19900, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MS013574 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS013574 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS013574 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS013574.1	MS013574.1	mRNA