MS013562 (gene) Bitter gourd (TR) v1

Overview


Name	MS013562
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Dof zinc finger protein
Location	scaffold402: 2469891 .. 2470400 (+)
RNA-Seq Expression	MS013562
Synteny	MS013562

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGATGGCAGAGAGAAAGATGAACAAAAATCAAGATGATGGGGCTGGAATTAAGCTTTTTGGGGCAACAATTTTGCTGCAGAGCAGGCAAGTAGTGAAAGAAGAGGCTGATCAACAAACGCCGGAAAAAAGGCCGGCGCCGGCGCCGGAGAAGATCATCCCTTGCCCAAGATGCAAAAGCATGGACACCAAATTTTGTTATTTCAATAATTATAATGTCAATCAGCCAAGGCATTTCTGTAAGGGCTGTCAGAGGTACTGGACCGCCGGCGGAGCCCTCCGCAACGTCCCCGTCGGAGCTGGCCGCCGCAAGACCAAGCCGCCCTGCCGGACCTTTTCTGGGTTGCCGGATAATTGCGTCTTTGACTCTTCTGGGATGGTCGCCGCGGCGGTGCAGCAGTTTGAATTGGACGGCATGGTGGACGAGTGGCATGTCGTCGCCGCAGACGGCGGTTTCCGGCGAATTTTGCCAGTCAAGAGGCGGAGGGATTGCCAAGACGGTCAAACCTGT

mRNA sequence

ACGATGGCAGAGAGAAAGATGAACAAAAATCAAGATGATGGGGCTGGAATTAAGCTTTTTGGGGCAACAATTTTGCTGCAGAGCAGGCAAGTAGTGAAAGAAGAGGCTGATCAACAAACGCCGGAAAAAAGGCCGGCGCCGGCGCCGGAGAAGATCATCCCTTGCCCAAGATGCAAAAGCATGGACACCAAATTTTGTTATTTCAATAATTATAATGTCAATCAGCCAAGGCATTTCTGTAAGGGCTGTCAGAGGTACTGGACCGCCGGCGGAGCCCTCCGCAACGTCCCCGTCGGAGCTGGCCGCCGCAAGACCAAGCCGCCCTGCCGGACCTTTTCTGGGTTGCCGGATAATTGCGTCTTTGACTCTTCTGGGATGGTCGCCGCGGCGGTGCAGCAGTTTGAATTGGACGGCATGGTGGACGAGTGGCATGTCGTCGCCGCAGACGGCGGTTTCCGGCGAATTTTGCCAGTCAAGAGGCGGAGGGATTGCCAAGACGGTCAAACCTGT

Coding sequence (CDS)

ACGATGGCAGAGAGAAAGATGAACAAAAATCAAGATGATGGGGCTGGAATTAAGCTTTTTGGGGCAACAATTTTGCTGCAGAGCAGGCAAGTAGTGAAAGAAGAGGCTGATCAACAAACGCCGGAAAAAAGGCCGGCGCCGGCGCCGGAGAAGATCATCCCTTGCCCAAGATGCAAAAGCATGGACACCAAATTTTGTTATTTCAATAATTATAATGTCAATCAGCCAAGGCATTTCTGTAAGGGCTGTCAGAGGTACTGGACCGCCGGCGGAGCCCTCCGCAACGTCCCCGTCGGAGCTGGCCGCCGCAAGACCAAGCCGCCCTGCCGGACCTTTTCTGGGTTGCCGGATAATTGCGTCTTTGACTCTTCTGGGATGGTCGCCGCGGCGGTGCAGCAGTTTGAATTGGACGGCATGGTGGACGAGTGGCATGTCGTCGCCGCAGACGGCGGTTTCCGGCGAATTTTGCCAGTCAAGAGGCGGAGGGATTGCCAAGACGGTCAAACCTGT

Protein sequence

TMAERKMNKNQDDGAGIKLFGATILLQSRQVVKEEADQQTPEKRPAPAPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCRTFSGLPDNCVFDSSGMVAAAVQQFELDGMVDEWHVVAADGGFRRILPVKRRRDCQDGQTC

Homology

[Close]

BLAST of MS013562 vs. NCBI nr
Match: XP_008443229.1 (PREDICTED: dof zinc finger protein DOF1.5 [Cucumis melo] >KAA0057037.1 dof zinc finger protein DOF1.5 [Cucumis melo var. makuwa])

HSP 1 Score: 281.6 bits (719), Expect = 4.6e-72
Identity = 139/183 (75.96%), Postives = 153/183 (83.61%), Query Frame = 0


Query: 2   MAERKMNKNQDD--GAGIKLFGATILLQS-RQVVKEE--------ADQQTPEKRPAPAPE 61
           M ERK +KN +D  G GIKLFGATI+LQ+ RQ++KEE        +DQQT EKR    PE
Sbjct: 2   MGERKHDKNNEDQHGGGIKLFGATIMLQNKRQIIKEEEEEEEANKSDQQTLEKR----PE 61

Query: 62  KIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCR 121
           KIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVP+GAGRRKTKPPCR
Sbjct: 62  KIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRKTKPPCR 121

Query: 122 TFSGLPDNCVFDSSGMVAAAVQQFELDGMVDEWHVVAA---DGGFRRILPVKRRRDCQDG 171
           TF GLP+NCVFDSSG+V   VQ FEL+GMV++WH VAA    GGFR+ILPVKRRRDCQDG
Sbjct: 122 TFGGLPENCVFDSSGIV--TVQPFELEGMVEKWHAVAAAATQGGFRQILPVKRRRDCQDG 178

[Close]

BLAST of MS013562 vs. NCBI nr
Match: XP_011657769.2 (dof zinc finger protein DOF1.5 [Cucumis sativus])

HSP 1 Score: 273.9 bits (699), Expect = 9.6e-70
Identity = 136/186 (73.12%), Postives = 151/186 (81.18%), Query Frame = 0


Query: 2   MAERKMNKNQDD--GAGIKLFGATILLQS-RQVVKEE-----------ADQQTPEKRPAP 61
           M ERK +KN +D    GIKLFGATI+LQ+ RQ++KEE           +DQQ+ EKR   
Sbjct: 2   MGERKHDKNNEDQHEGGIKLFGATIMLQNKRQIIKEEEEEEEEEEANKSDQQSLEKR--- 61

Query: 62  APEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKP 121
            PEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVP+GAGRRKTKP
Sbjct: 62  -PEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRKTKP 121

Query: 122 PCRTFSGLPDNCVFDSSGMVAAAVQQFELDGMVDEWHVVAA---DGGFRRILPVKRRRDC 171
           PCRTF GLP+NCVFDSSG +   VQ FEL+GMV++WHVVAA    GGFR+ILPVKRRRDC
Sbjct: 122 PCRTFGGLPENCVFDSSG-INVTVQPFELEGMVEKWHVVAAAATQGGFRQILPVKRRRDC 181

[Close]

BLAST of MS013562 vs. NCBI nr
Match: XP_038895022.1 (dof zinc finger protein DOF1.5-like [Benincasa hispida])

HSP 1 Score: 273.1 bits (697), Expect = 1.6e-69
Identity = 137/184 (74.46%), Postives = 150/184 (81.52%), Query Frame = 0


Query: 2   MAERKMNKNQDDGAGIKLFGATILLQ-SRQVVKEE-----------ADQQTPEKRPAPAP 61
           M ER+ N       GIKLFG TI+LQ +RQ++KEE           +DQQ+ EKR    P
Sbjct: 2   MGERENNNE----GGIKLFGTTIMLQNNRQIIKEEEDEEEEEEPNKSDQQSLEKR----P 61

Query: 62  EKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPC 121
           EKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPC
Sbjct: 62  EKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPC 121

Query: 122 RTFSGLPDNCVFDSSGMVAAAVQQFELDGMVDEWHVVAA---DGGFRRILPVKRRRDCQD 171
           RTF+GLP+NCVFDSSGMV  AVQ FEL+GMV+EWHVVAA    GGFR++LPVKRRRDCQD
Sbjct: 122 RTFAGLPENCVFDSSGMV--AVQPFELEGMVEEWHVVAAAATQGGFRQMLPVKRRRDCQD 175

[Close]

BLAST of MS013562 vs. NCBI nr
Match: XP_023000934.1 (cyclic dof factor 4-like [Cucurbita maxima])

HSP 1 Score: 271.9 bits (694), Expect = 3.6e-69
Identity = 133/174 (76.44%), Postives = 149/174 (85.63%), Query Frame = 0


Query: 2   MAERKMNKNQDDGAGIKLFGATILLQSRQVVKEE---ADQQTPEKRPAPAPEKIIPCPRC 61
           MAERK N ++D   GIKLFGATI+L + +++KEE   +DQQ+PEKR    P+KIIPCPRC
Sbjct: 3   MAERKKN-DEDQEGGIKLFGATIMLHNNRILKEEPNDSDQQSPEKR----PDKIIPCPRC 62

Query: 62  KSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCRTFSGLPDN 121
           KSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPC+TF GLP+N
Sbjct: 63  KSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCQTFGGLPEN 122

Query: 122 CVFDSSGMVAAAVQQFELDGMVDEWHVV--AADGGFRRILPVKRRRDCQDGQTC 171
           CVFDSSG+V  AVQ FEL+GMV+EWHVV  AA  GFR+ILPVKRRR  QDGQ C
Sbjct: 123 CVFDSSGIV--AVQPFELEGMVEEWHVVAAAAHDGFRQILPVKRRRGYQDGQIC 169

[Close]

BLAST of MS013562 vs. NCBI nr
Match: KAG6583962.1 (Cyclic dof factor 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 271.6 bits (693), Expect = 4.8e-69
Identity = 133/174 (76.44%), Postives = 148/174 (85.06%), Query Frame = 0


Query: 2   MAERKMNKNQDDGAGIKLFGATILLQSRQVVKEE---ADQQTPEKRPAPAPEKIIPCPRC 61
           MAERK N ++D   GIKLFGATI+L   +++KEE   +DQQ+PEKR    P+KIIPCPRC
Sbjct: 3   MAERKKN-DEDHEGGIKLFGATIMLHDNRILKEEPNDSDQQSPEKR----PDKIIPCPRC 62

Query: 62  KSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCRTFSGLPDN 121
           KSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPC+TF GLP+N
Sbjct: 63  KSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCQTFGGLPEN 122

Query: 122 CVFDSSGMVAAAVQQFELDGMVDEWHVV--AADGGFRRILPVKRRRDCQDGQTC 171
           CVFDSSG+V  AVQ FEL+GMV+EWHVV  AA  GFR+ILPVKRRR  QDGQ C
Sbjct: 123 CVFDSSGIV--AVQPFELEGMVEEWHVVAAAAQDGFRQILPVKRRRGYQDGQIC 169

[Close]

BLAST of MS013562 vs. ExPASy Swiss-Prot
Match: P68350 (Dof zinc finger protein DOF1.5 OS=Arabidopsis thaliana OX=3702 GN=DOF1.5 PE=1 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 8.5e-45
Identity = 99/177 (55.93%), Postives = 111/177 (62.71%), Query Frame = 0


Query: 13  DGAGIKLFGATILLQSR--QVVK--EEADQQTPEKRPAPA-------------PEKIIPC 72
           D  GIKLFG TI   +   Q +K  E+  QQ PE +   A             P+KIIPC
Sbjct: 5   DSQGIKLFGKTITFNANITQTIKKEEQQQQQQPELQATTAVRSPSSDLTAEKRPDKIIPC 64

Query: 73  PRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCRTFSGL 132
           PRCKSM+TKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRK+KPP R     
Sbjct: 65  PRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKSKPPGRV---- 124

Query: 133 PDNCVFDSSGMVAAAVQQFELDG-MVDEWH-VVAADGGFRRILPVKRRRDCQDGQTC 171
                 +  G    AV Q ELD  +V+EW    A+ GGFR   PVKR R   DGQ+C
Sbjct: 125 --GGFAELLGAATGAVDQVELDALLVEEWRAATASHGGFRHDFPVKRLRCYTDGQSC 175

[Close]

BLAST of MS013562 vs. ExPASy Swiss-Prot
Match: O22967 (Cyclic dof factor 4 OS=Arabidopsis thaliana OX=3702 GN=CDF4 PE=2 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 5.1e-42
Identity = 94/176 (53.41%), Postives = 109/176 (61.93%), Query Frame = 0


Query: 13  DGAGIKLFGATILLQSRQVVKEEADQQTPEKRPAPA--------------PEKIIPCPRC 72
           D  GIKLFG TI   +R  +K E +   PE+    A              P+KII CPRC
Sbjct: 5   DSQGIKLFGKTIAFNTR-TIKNEEETHPPEQEATIAVRSSSSSDLTAEKRPDKIIACPRC 64

Query: 73  KSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCRTFSGLPDN 132
           KSM+TKFCYFNNYNVNQPRHFCKGC RYWTAGGALRNVPVGAGRRK+KPP R   G+   
Sbjct: 65  KSMETKFCYFNNYNVNQPRHFCKGCHRYWTAGGALRNVPVGAGRRKSKPPGRVVVGM--- 124

Query: 133 CVFDSSGMVAAAVQQFELDG--MVDEWH--VVAADGGFRRILPVKRRRDCQDGQTC 171
            + D +G     V+Q EL    +V+EW     AA G FR   P+KR R   DGQ+C
Sbjct: 125 -LGDGNG-----VRQVELINGLLVEEWQHAAAAAHGSFRHDFPMKRLRCYSDGQSC 170

[Close]

BLAST of MS013562 vs. ExPASy Swiss-Prot
Match: Q8LFV3 (Cyclic dof factor 3 OS=Arabidopsis thaliana OX=3702 GN=CDF3 PE=1 SV=2)

HSP 1 Score: 128.6 bits (322), Expect = 6.5e-29
Identity = 53/73 (72.60%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 34  EEADQQTPEKRPAPAPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGAL 93
           E+  Q TP+ +    P KI+PCPRCKSM+TKFCY+NNYN+NQPRHFCK CQRYWTAGG +
Sbjct: 91  EDNQQTTPDGKTLKKPTKILPCPRCKSMETKFCYYNNYNINQPRHFCKACQRYWTAGGTM 150

Query: 94  RNVPVGAGRRKTK 107
           RNVPVGAGRRK K
Sbjct: 151 RNVPVGAGRRKNK 163

[Close]

BLAST of MS013562 vs. ExPASy Swiss-Prot
Match: Q93ZL5 (Cyclic dof factor 2 OS=Arabidopsis thaliana OX=3702 GN=CDF2 PE=1 SV=2)

HSP 1 Score: 124.4 bits (311), Expect = 1.2e-27
Identity = 50/65 (76.92%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 49  PEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPP 108
           P+KI+PCPRC SM+TKFCY+NNYNVNQPRHFCK CQRYWTAGG +RNVPVGAGRRK K P
Sbjct: 134 PDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKSP 193

Query: 109 CRTFS 114
              ++
Sbjct: 194 ASHYN 198

[Close]

BLAST of MS013562 vs. ExPASy Swiss-Prot
Match: Q8W1E3 (Cyclic dof factor 1 OS=Arabidopsis thaliana OX=3702 GN=CDF1 PE=1 SV=2)

HSP 1 Score: 122.1 bits (305), Expect = 6.1e-27
Identity = 55/99 (55.56%), Postives = 69/99 (69.70%), Query Frame = 0


Query: 17  IKLFGATILLQSRQVVKEEADQ---------QTPEKRPAPAPEKIIPCPRCKSMDTKFCY 76
           IKLFG  I   +   V +E ++         Q+ + +    P KI+PCPRC SM+TKFCY
Sbjct: 9   IKLFGMKIPFPTVLEVADEEEEKNQNKTLTDQSEKDKTLKKPTKILPCPRCNSMETKFCY 68

Query: 77  FNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTK 107
           +NNYNVNQPRHFCK CQRYWT+GG +R+VP+GAGRRK K
Sbjct: 69  YNNYNVNQPRHFCKACQRYWTSGGTMRSVPIGAGRRKNK 107

[Close]

BLAST of MS013562 vs. ExPASy TrEMBL
Match: A0A5A7UQX1 (Dof zinc finger protein DOF1.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G002240 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.2e-72
Identity = 139/183 (75.96%), Postives = 153/183 (83.61%), Query Frame = 0


Query: 2   MAERKMNKNQDD--GAGIKLFGATILLQS-RQVVKEE--------ADQQTPEKRPAPAPE 61
           M ERK +KN +D  G GIKLFGATI+LQ+ RQ++KEE        +DQQT EKR    PE
Sbjct: 2   MGERKHDKNNEDQHGGGIKLFGATIMLQNKRQIIKEEEEEEEANKSDQQTLEKR----PE 61

Query: 62  KIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCR 121
           KIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVP+GAGRRKTKPPCR
Sbjct: 62  KIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRKTKPPCR 121

Query: 122 TFSGLPDNCVFDSSGMVAAAVQQFELDGMVDEWHVVAA---DGGFRRILPVKRRRDCQDG 171
           TF GLP+NCVFDSSG+V   VQ FEL+GMV++WH VAA    GGFR+ILPVKRRRDCQDG
Sbjct: 122 TFGGLPENCVFDSSGIV--TVQPFELEGMVEKWHAVAAAATQGGFRQILPVKRRRDCQDG 178

[Close]

BLAST of MS013562 vs. ExPASy TrEMBL
Match: A0A1S3B895 (dof zinc finger protein DOF1.5 OS=Cucumis melo OX=3656 GN=LOC103486868 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.2e-72
Identity = 139/183 (75.96%), Postives = 153/183 (83.61%), Query Frame = 0


Query: 2   MAERKMNKNQDD--GAGIKLFGATILLQS-RQVVKEE--------ADQQTPEKRPAPAPE 61
           M ERK +KN +D  G GIKLFGATI+LQ+ RQ++KEE        +DQQT EKR    PE
Sbjct: 2   MGERKHDKNNEDQHGGGIKLFGATIMLQNKRQIIKEEEEEEEANKSDQQTLEKR----PE 61

Query: 62  KIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCR 121
           KIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVP+GAGRRKTKPPCR
Sbjct: 62  KIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRKTKPPCR 121

Query: 122 TFSGLPDNCVFDSSGMVAAAVQQFELDGMVDEWHVVAA---DGGFRRILPVKRRRDCQDG 171
           TF GLP+NCVFDSSG+V   VQ FEL+GMV++WH VAA    GGFR+ILPVKRRRDCQDG
Sbjct: 122 TFGGLPENCVFDSSGIV--TVQPFELEGMVEKWHAVAAAATQGGFRQILPVKRRRDCQDG 178

[Close]

BLAST of MS013562 vs. ExPASy TrEMBL
Match: A0A0A0LV52 (Dof-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G475990 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.7e-70
Identity = 136/184 (73.91%), Postives = 151/184 (82.07%), Query Frame = 0


Query: 2   MAERKMNKNQDD--GAGIKLFGATILLQS-RQVVKEE---------ADQQTPEKRPAPAP 61
           M ERK +KN +D    GIKLFGATI+LQ+ RQ++KEE         +DQQ+ EKR    P
Sbjct: 2   MGERKHDKNNEDQHEGGIKLFGATIMLQNKRQIIKEEEEEEEEENKSDQQSLEKR----P 61

Query: 62  EKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPC 121
           EKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVP+GAGRRKTKPPC
Sbjct: 62  EKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRKTKPPC 121

Query: 122 RTFSGLPDNCVFDSSGMVAAAVQQFELDGMVDEWHVVAA---DGGFRRILPVKRRRDCQD 171
           RTF GLP+NCVFDSSG +   VQ FEL+GMV++WHVVAA    GGFR+ILPVKRRRDC D
Sbjct: 122 RTFGGLPENCVFDSSG-INVTVQPFELEGMVEKWHVVAAAATQGGFRQILPVKRRRDCPD 180

[Close]

BLAST of MS013562 vs. ExPASy TrEMBL
Match: A0A6J1KLC9 (cyclic dof factor 4-like OS=Cucurbita maxima OX=3661 GN=LOC111495221 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.8e-69
Identity = 133/174 (76.44%), Postives = 149/174 (85.63%), Query Frame = 0


Query: 2   MAERKMNKNQDDGAGIKLFGATILLQSRQVVKEE---ADQQTPEKRPAPAPEKIIPCPRC 61
           MAERK N ++D   GIKLFGATI+L + +++KEE   +DQQ+PEKR    P+KIIPCPRC
Sbjct: 3   MAERKKN-DEDQEGGIKLFGATIMLHNNRILKEEPNDSDQQSPEKR----PDKIIPCPRC 62

Query: 62  KSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCRTFSGLPDN 121
           KSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPC+TF GLP+N
Sbjct: 63  KSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCQTFGGLPEN 122

Query: 122 CVFDSSGMVAAAVQQFELDGMVDEWHVV--AADGGFRRILPVKRRRDCQDGQTC 171
           CVFDSSG+V  AVQ FEL+GMV+EWHVV  AA  GFR+ILPVKRRR  QDGQ C
Sbjct: 123 CVFDSSGIV--AVQPFELEGMVEEWHVVAAAAHDGFRQILPVKRRRGYQDGQIC 169

[Close]

BLAST of MS013562 vs. ExPASy TrEMBL
Match: A0A6J1EH23 (dof zinc finger protein DOF1.5-like OS=Cucurbita moschata OX=3662 GN=LOC111434231 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.3e-69
Identity = 133/174 (76.44%), Postives = 148/174 (85.06%), Query Frame = 0


Query: 2   MAERKMNKNQDDGAGIKLFGATILLQSRQVVKEE---ADQQTPEKRPAPAPEKIIPCPRC 61
           MAERK N ++D   GIKLFGATI+L   +++KEE   +DQQ+PEKR    P+KIIPCPRC
Sbjct: 3   MAERKKN-DEDHEGGIKLFGATIMLHDNRILKEEPNVSDQQSPEKR----PDKIIPCPRC 62

Query: 62  KSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCRTFSGLPDN 121
           KSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPC+TF GLP+N
Sbjct: 63  KSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCQTFGGLPEN 122

Query: 122 CVFDSSGMVAAAVQQFELDGMVDEWHVV--AADGGFRRILPVKRRRDCQDGQTC 171
           CVFDSSG+V  AVQ FEL+GMV+EWHVV  AA  GFR+ILPVKRRR  QDGQ C
Sbjct: 123 CVFDSSGIV--AVQPFELEGMVEEWHVVAAAAQDGFRQILPVKRRRGYQDGQIC 169

[Close]

BLAST of MS013562 vs. TAIR 10
Match: AT1G29160.1 (Dof-type zinc finger DNA-binding family protein )

HSP 1 Score: 181.4 bits (459), Expect = 6.0e-46
Identity = 99/177 (55.93%), Postives = 111/177 (62.71%), Query Frame = 0


Query: 13  DGAGIKLFGATILLQSR--QVVK--EEADQQTPEKRPAPA-------------PEKIIPC 72
           D  GIKLFG TI   +   Q +K  E+  QQ PE +   A             P+KIIPC
Sbjct: 5   DSQGIKLFGKTITFNANITQTIKKEEQQQQQQPELQATTAVRSPSSDLTAEKRPDKIIPC 64

Query: 73  PRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCRTFSGL 132
           PRCKSM+TKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRK+KPP R     
Sbjct: 65  PRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKSKPPGRV---- 124

Query: 133 PDNCVFDSSGMVAAAVQQFELDG-MVDEWH-VVAADGGFRRILPVKRRRDCQDGQTC 171
                 +  G    AV Q ELD  +V+EW    A+ GGFR   PVKR R   DGQ+C
Sbjct: 125 --GGFAELLGAATGAVDQVELDALLVEEWRAATASHGGFRHDFPVKRLRCYTDGQSC 175

[Close]

BLAST of MS013562 vs. TAIR 10
Match: AT2G34140.1 (Dof-type zinc finger DNA-binding family protein )

HSP 1 Score: 172.2 bits (435), Expect = 3.7e-43
Identity = 94/176 (53.41%), Postives = 109/176 (61.93%), Query Frame = 0


Query: 13  DGAGIKLFGATILLQSRQVVKEEADQQTPEKRPAPA--------------PEKIIPCPRC 72
           D  GIKLFG TI   +R  +K E +   PE+    A              P+KII CPRC
Sbjct: 5   DSQGIKLFGKTIAFNTR-TIKNEEETHPPEQEATIAVRSSSSSDLTAEKRPDKIIACPRC 64

Query: 73  KSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCRTFSGLPDN 132
           KSM+TKFCYFNNYNVNQPRHFCKGC RYWTAGGALRNVPVGAGRRK+KPP R   G+   
Sbjct: 65  KSMETKFCYFNNYNVNQPRHFCKGCHRYWTAGGALRNVPVGAGRRKSKPPGRVVVGM--- 124

Query: 133 CVFDSSGMVAAAVQQFELDG--MVDEWH--VVAADGGFRRILPVKRRRDCQDGQTC 171
            + D +G     V+Q EL    +V+EW     AA G FR   P+KR R   DGQ+C
Sbjct: 125 -LGDGNG-----VRQVELINGLLVEEWQHAAAAAHGSFRHDFPMKRLRCYSDGQSC 170

[Close]

BLAST of MS013562 vs. TAIR 10
Match: AT3G47500.1 (cycling DOF factor 3 )

HSP 1 Score: 128.6 bits (322), Expect = 4.6e-30
Identity = 53/73 (72.60%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 34  EEADQQTPEKRPAPAPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGAL 93
           E+  Q TP+ +    P KI+PCPRCKSM+TKFCY+NNYN+NQPRHFCK CQRYWTAGG +
Sbjct: 91  EDNQQTTPDGKTLKKPTKILPCPRCKSMETKFCYYNNYNINQPRHFCKACQRYWTAGGTM 150

Query: 94  RNVPVGAGRRKTK 107
           RNVPVGAGRRK K
Sbjct: 151 RNVPVGAGRRKNK 163

[Close]

BLAST of MS013562 vs. TAIR 10
Match: AT5G39660.1 (cycling DOF factor 2 )

HSP 1 Score: 124.4 bits (311), Expect = 8.7e-29
Identity = 50/65 (76.92%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 49  PEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPP 108
           P+KI+PCPRC SM+TKFCY+NNYNVNQPRHFCK CQRYWTAGG +RNVPVGAGRRK K P
Sbjct: 134 PDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKSP 193

Query: 109 CRTFS 114
              ++
Sbjct: 194 ASHYN 198

[Close]

BLAST of MS013562 vs. TAIR 10
Match: AT5G39660.2 (cycling DOF factor 2 )

HSP 1 Score: 124.4 bits (311), Expect = 8.7e-29
Identity = 50/65 (76.92%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 49  PEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPP 108
           P+KI+PCPRC SM+TKFCY+NNYNVNQPRHFCK CQRYWTAGG +RNVPVGAGRRK K P
Sbjct: 134 PDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKSP 193

Query: 109 CRTFS 114
              ++
Sbjct: 194 ASHYN 198

The following BLAST results are available for this feature:

BLAST of MS013562 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443229.1	4.6e-72	75.96	PREDICTED: dof zinc finger protein DOF1.5 [Cucumis melo] >KAA0057037.1 dof zinc ...	[more]
XP_011657769.2	9.6e-70	73.12	dof zinc finger protein DOF1.5 [Cucumis sativus]	[more]
XP_038895022.1	1.6e-69	74.46	dof zinc finger protein DOF1.5-like [Benincasa hispida]	[more]
XP_023000934.1	3.6e-69	76.44	cyclic dof factor 4-like [Cucurbita maxima]	[more]
KAG6583962.1	4.8e-69	76.44	Cyclic dof factor 4, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of MS013562 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P68350	8.5e-45	55.93	Dof zinc finger protein DOF1.5 OS=Arabidopsis thaliana OX=3702 GN=DOF1.5 PE=1 SV...	[more]
O22967	5.1e-42	53.41	Cyclic dof factor 4 OS=Arabidopsis thaliana OX=3702 GN=CDF4 PE=2 SV=1	[more]
Q8LFV3	6.5e-29	72.60	Cyclic dof factor 3 OS=Arabidopsis thaliana OX=3702 GN=CDF3 PE=1 SV=2	[more]
Q93ZL5	1.2e-27	76.92	Cyclic dof factor 2 OS=Arabidopsis thaliana OX=3702 GN=CDF2 PE=1 SV=2	[more]
Q8W1E3	6.1e-27	55.56	Cyclic dof factor 1 OS=Arabidopsis thaliana OX=3702 GN=CDF1 PE=1 SV=2	[more]

BLAST of MS013562 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UQX1	2.2e-72	75.96	Dof zinc finger protein DOF1.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3B895	2.2e-72	75.96	dof zinc finger protein DOF1.5 OS=Cucumis melo OX=3656 GN=LOC103486868 PE=4 SV=1	[more]
A0A0A0LV52	2.7e-70	73.91	Dof-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G475990 PE...	[more]
A0A6J1KLC9	1.8e-69	76.44	cyclic dof factor 4-like OS=Cucurbita maxima OX=3661 GN=LOC111495221 PE=4 SV=1	[more]
A0A6J1EH23	2.3e-69	76.44	dof zinc finger protein DOF1.5-like OS=Cucurbita moschata OX=3662 GN=LOC11143423...	[more]

BLAST of MS013562 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29160.1	6.0e-46	55.93	Dof-type zinc finger DNA-binding family protein	[more]
AT2G34140.1	3.7e-43	53.41	Dof-type zinc finger DNA-binding family protein	[more]
AT3G47500.1	4.6e-30	72.60	cycling DOF factor 3	[more]
AT5G39660.1	8.7e-29	76.92	cycling DOF factor 2	[more]
AT5G39660.2	8.7e-29	76.92	cycling DOF factor 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003851	Zinc finger, Dof-type	PFAM	PF02701	zf-Dof	coord: 51..106 e-value: 5.5E-32 score: 109.7
IPR003851	Zinc finger, Dof-type	PROSITE	PS01361	ZF_DOF_1	coord: 55..91
IPR003851	Zinc finger, Dof-type	PROSITE	PS50884	ZF_DOF_2	coord: 53..107 score: 28.462576
None	No IPR available	PANTHER	PTHR31089:SF49	DOF ZINC FINGER PROTEIN DOF1.5-LIKE	coord: 11..163
None	No IPR available	PANTHER	PTHR31089	CYCLIC DOF FACTOR 2	coord: 11..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS013562.1	MS013562.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding