MS013532 (gene) Bitter gourd (TR) v1

Overview
NameMS013532
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionNon-specific serine/threonine protein kinase
Locationscaffold402: 2233531 .. 2233701 (-)
RNA-Seq ExpressionMS013532
SyntenyMS013532
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTGATGCACTCCAGCAAATTACGAGAAAGTTAGGTGCAGTTTATTGGAAATTCAACAGTGACTCCTGTAGCATTGAAATGTTTGGGCTCACAGAAAAAGCTCCGAGGGAATCTGAGAGTAAAATTACTTGTGATTGCAAGTTCGCGAAAGAAACAATTTGTCATGTCATA

mRNA sequence

GTTGATGCACTCCAGCAAATTACGAGAAAGTTAGGTGCAGTTTATTGGAAATTCAACAGTGACTCCTGTAGCATTGAAATGTTTGGGCTCACAGAAAAAGCTCCGAGGGAATCTGAGAGTAAAATTACTTGTGATTGCAAGTTCGCGAAAGAAACAATTTGTCATGTCATA

Coding sequence (CDS)

GTTGATGCACTCCAGCAAATTACGAGAAAGTTAGGTGCAGTTTATTGGAAATTCAACAGTGACTCCTGTAGCATTGAAATGTTTGGGCTCACAGAAAAAGCTCCGAGGGAATCTGAGAGTAAAATTACTTGTGATTGCAAGTTCGCGAAAGAAACAATTTGTCATGTCATA

Protein sequence

VDALQQITRKLGAVYWKFNSDSCSIEMFGLTEKAPRESESKITCDCKFAKETICHVI
Homology
[Close]
BLAST of MS013532 vs. NCBI nr
Match: XP_022140204.1 (probable LRR receptor-like serine/threonine-protein kinase RFK1 [Momordica charantia])

HSP 1 Score: 122.5 bits (306), Expect = 1.2e-24
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 1  VDALQQITRKLGAVYWKFNSDSCSIEMFGLTEKAPRESESKITCDCKFAKETICHVI 58
          VDALQQITRKLGAVYWKFNSDSCSIEMFGLTEKAPRESESKITCDCKFAKETICHVI
Sbjct: 33 VDALQQITRKLGAVYWKFNSDSCSIEMFGLTEKAPRESESKITCDCKFAKETICHVI 89

[Close]
BLAST of MS013532 vs. NCBI nr
Match: XP_023001382.1 (probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 98.2 bits (243), Expect = 2.4e-17
Identity = 43/57 (75.44%), Postives = 47/57 (82.46%), Query Frame = 0 

Query: 1  VDALQQITRKLGAVYWKFNSDSCSIEMFGLTEKAPRESESKITCDCKFAKETICHVI 58
          VDALQQITR LGAVYWKFNSDSC++EMFG+TEK PR SE KI CDC     TICHV+
Sbjct: 33 VDALQQITRTLGAVYWKFNSDSCAVEMFGITEKPPRGSEGKIGCDCNVENSTICHVV 89

[Close]
BLAST of MS013532 vs. NCBI nr
Match: XP_023001383.1 (probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X2 [Cucurbita maxima])

HSP 1 Score: 98.2 bits (243), Expect = 2.4e-17
Identity = 43/57 (75.44%), Postives = 47/57 (82.46%), Query Frame = 0 

Query: 1  VDALQQITRKLGAVYWKFNSDSCSIEMFGLTEKAPRESESKITCDCKFAKETICHVI 58
          VDALQQITR LGAVYWKFNSDSC++EMFG+TEK PR SE KI CDC     TICHV+
Sbjct: 33 VDALQQITRTLGAVYWKFNSDSCAVEMFGITEKPPRGSEGKIGCDCNVENSTICHVV 89

[Close]
BLAST of MS013532 vs. NCBI nr
Match: KAG7019553.1 (putative LRR receptor-like serine/threonine-protein kinase RFK1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.1 bits (240), Expect = 5.4e-17
Identity = 43/57 (75.44%), Postives = 46/57 (80.70%), Query Frame = 0 

Query: 1  VDALQQITRKLGAVYWKFNSDSCSIEMFGLTEKAPRESESKITCDCKFAKETICHVI 58
          VDALQQITR LGAVYWKFNSDSC +EMFG+TEK PR SE KI CDC     TICHV+
Sbjct: 33 VDALQQITRTLGAVYWKFNSDSCVVEMFGITEKPPRGSEGKIGCDCNVENSTICHVV 89

[Close]
BLAST of MS013532 vs. NCBI nr
Match: XP_022927452.1 (probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 97.1 bits (240), Expect = 5.4e-17
Identity = 43/57 (75.44%), Postives = 46/57 (80.70%), Query Frame = 0 

Query: 1  VDALQQITRKLGAVYWKFNSDSCSIEMFGLTEKAPRESESKITCDCKFAKETICHVI 58
          VDALQQITR LGAVYWKFNSDSC +EMFG+TEK PR SE KI CDC     TICHV+
Sbjct: 33 VDALQQITRTLGAVYWKFNSDSCVVEMFGITEKPPRGSEGKIGCDCNVENSTICHVV 89

[Close]
BLAST of MS013532 vs. ExPASy Swiss-Prot
Match: Q9FXF2 (Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana OX=3702 GN=RKF1 PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.7e-11
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 0 

Query: 1   VDALQQITRKLGAVYWKFNSDSCSIEMFGLTEKAPRESESKITCDCKFAKETICHVI 58
           VDALQQI   LG+ +WKF++++C IEM GLTE  P  ++ +I C+C    +T CHV+
Sbjct: 47  VDALQQIATTLGSKFWKFDAENCKIEMVGLTETPPPTAKQEIECECSPTNDTDCHVV 103

[Close]
BLAST of MS013532 vs. ExPASy TrEMBL
Match: A0A6J1CF34 (Non-specific serine/threonine protein kinase OS=Momordica charantia OX=3673 GN=LOC111010929 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 5.8e-25
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 1  VDALQQITRKLGAVYWKFNSDSCSIEMFGLTEKAPRESESKITCDCKFAKETICHVI 58
          VDALQQITRKLGAVYWKFNSDSCSIEMFGLTEKAPRESESKITCDCKFAKETICHVI
Sbjct: 33 VDALQQITRKLGAVYWKFNSDSCSIEMFGLTEKAPRESESKITCDCKFAKETICHVI 89

[Close]
BLAST of MS013532 vs. ExPASy TrEMBL
Match: A0A6J1KQC8 (Non-specific serine/threonine protein kinase OS=Cucurbita maxima OX=3661 GN=LOC111495536 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-17
Identity = 43/57 (75.44%), Postives = 47/57 (82.46%), Query Frame = 0 

Query: 1  VDALQQITRKLGAVYWKFNSDSCSIEMFGLTEKAPRESESKITCDCKFAKETICHVI 58
          VDALQQITR LGAVYWKFNSDSC++EMFG+TEK PR SE KI CDC     TICHV+
Sbjct: 33 VDALQQITRTLGAVYWKFNSDSCAVEMFGITEKPPRGSEGKIGCDCNVENSTICHVV 89

[Close]
BLAST of MS013532 vs. ExPASy TrEMBL
Match: A0A6J1KGD5 (Non-specific serine/threonine protein kinase OS=Cucurbita maxima OX=3661 GN=LOC111495536 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-17
Identity = 43/57 (75.44%), Postives = 47/57 (82.46%), Query Frame = 0 

Query: 1  VDALQQITRKLGAVYWKFNSDSCSIEMFGLTEKAPRESESKITCDCKFAKETICHVI 58
          VDALQQITR LGAVYWKFNSDSC++EMFG+TEK PR SE KI CDC     TICHV+
Sbjct: 33 VDALQQITRTLGAVYWKFNSDSCAVEMFGITEKPPRGSEGKIGCDCNVENSTICHVV 89

[Close]
BLAST of MS013532 vs. ExPASy TrEMBL
Match: A0A6J1EI15 (Non-specific serine/threonine protein kinase OS=Cucurbita moschata OX=3662 GN=LOC111434276 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.6e-17
Identity = 43/57 (75.44%), Postives = 46/57 (80.70%), Query Frame = 0 

Query: 1  VDALQQITRKLGAVYWKFNSDSCSIEMFGLTEKAPRESESKITCDCKFAKETICHVI 58
          VDALQQITR LGAVYWKFNSDSC +EMFG+TEK PR SE KI CDC     TICHV+
Sbjct: 33 VDALQQITRTLGAVYWKFNSDSCVVEMFGITEKPPRGSEGKIGCDCNVENSTICHVV 89

[Close]
BLAST of MS013532 vs. ExPASy TrEMBL
Match: A0A6J1EH74 (Non-specific serine/threonine protein kinase OS=Cucurbita moschata OX=3662 GN=LOC111434276 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.6e-17
Identity = 43/57 (75.44%), Postives = 46/57 (80.70%), Query Frame = 0 

Query: 1  VDALQQITRKLGAVYWKFNSDSCSIEMFGLTEKAPRESESKITCDCKFAKETICHVI 58
          VDALQQITR LGAVYWKFNSDSC +EMFG+TEK PR SE KI CDC     TICHV+
Sbjct: 33 VDALQQITRTLGAVYWKFNSDSCVVEMFGITEKPPRGSEGKIGCDCNVENSTICHVV 89

[Close]
BLAST of MS013532 vs. TAIR 10
Match: AT1G29750.1 (receptor-like kinase in flowers 1 )

HSP 1 Score: 68.6 bits (166), Expect = 1.9e-12
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 0 

Query: 1  VDALQQITRKLGAVYWKFNSDSCSIEMFGLTEKAPRESESKITCDCKFAKETICHVI 58
          VDALQQI   LG+ +WKF++++C IEM GLTE  P  ++ +I C+C    +T CHV+
Sbjct: 32 VDALQQIATTLGSKFWKFDAENCKIEMVGLTETPPPTAKQEIECECSPTNDTDCHVV 88

[Close]
BLAST of MS013532 vs. TAIR 10
Match: AT1G29750.2 (receptor-like kinase in flowers 1 )

HSP 1 Score: 68.6 bits (166), Expect = 1.9e-12
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 0 

Query: 1   VDALQQITRKLGAVYWKFNSDSCSIEMFGLTEKAPRESESKITCDCKFAKETICHVI 58
           VDALQQI   LG+ +WKF++++C IEM GLTE  P  ++ +I C+C    +T CHV+
Sbjct: 47  VDALQQIATTLGSKFWKFDAENCKIEMVGLTETPPPTAKQEIECECSPTNDTDCHVV 103

[Close]
BLAST of MS013532 vs. TAIR 10
Match: AT1G29730.1 (Leucine-rich repeat transmembrane protein kinase )

HSP 1 Score: 39.7 bits (91), Expect = 9.5e-04
Identity = 18/57 (31.58%), Postives = 30/57 (52.63%), Query Frame = 0 

Query: 1   VDALQQITRKLGAVYWKFNSDSCSIEMFGLTEKAPRESE-SKITCDCKFAKETICHV 57
           V+AL+ IT  LG  +   + D C  +   +++   +E + S I CDC F   + CH+
Sbjct: 44  VEALKDITETLGVKHLNLSEDPCLTKTLVISQGVLKEGQNSTIRCDCHFNNYSTCHI 100

The following BLAST results are available for this feature:
BLAST of MS013532 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022140204.11.2e-24100.00probable LRR receptor-like serine/threonine-protein kinase RFK1 [Momordica chara... [more]
XP_023001382.12.4e-1775.44probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X1 [Cucu... [more]
XP_023001383.12.4e-1775.44probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X2 [Cucu... [more]
KAG7019553.15.4e-1775.44putative LRR receptor-like serine/threonine-protein kinase RFK1 [Cucurbita argyr... [more]
XP_022927452.15.4e-1775.44probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X1 [Cucu... [more]
BLAST of MS013532 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FXF22.7e-1149.12Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis t... [more]
BLAST of MS013532 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CF345.8e-25100.00Non-specific serine/threonine protein kinase OS=Momordica charantia OX=3673 GN=L... [more]
A0A6J1KQC81.2e-1775.44Non-specific serine/threonine protein kinase OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
A0A6J1KGD51.2e-1775.44Non-specific serine/threonine protein kinase OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
A0A6J1EI152.6e-1775.44Non-specific serine/threonine protein kinase OS=Cucurbita moschata OX=3662 GN=LO... [more]
A0A6J1EH742.6e-1775.44Non-specific serine/threonine protein kinase OS=Cucurbita moschata OX=3662 GN=LO... [more]
BLAST of MS013532 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G29750.11.9e-1249.12receptor-like kinase in flowers 1 [more]
AT1G29750.21.9e-1249.12receptor-like kinase in flowers 1 [more]
AT1G29730.19.5e-0431.58Leucine-rich repeat transmembrane protein kinase [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS013532.1MS013532.1mRNA