MS013520 (gene) Bitter gourd (TR) v1

Overview


Name	MS013520
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein of unknown function, DUF584
Location	scaffold402: 2167509 .. 2167604 (+)
RNA-Seq Expression	MS013520
Synteny	MS013520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CATGTGATGGCAGATAGGCGAGTGATTGGGAAAATGGAGTTCTCTATGTGTACCAACAATGGAAGGACGCTGAAGGGACCAGATTTGAGTCGAGTA

mRNA sequence

CATGTGATGGCAGATAGGCGAGTGATTGGGAAAATGGAGTTCTCTATGTGTACCAACAATGGAAGGACGCTGAAGGGACCAGATTTGAGTCGAGTA

Coding sequence (CDS)

CATGTGATGGCAGATAGGCGAGTGATTGGGAAAATGGAGTTCTCTATGTGTACCAACAATGGAAGGACGCTGAAGGGACCAGATTTGAGTCGAGTA

Protein sequence

HVMADRRVIGKMEFSMCTNNGRTLKGPDLSRV

Homology

[Close]

BLAST of MS013520 vs. NCBI nr
Match: XP_038895158.1 (uncharacterized protein LOC120083461 [Benincasa hispida])

HSP 1 Score: 55.1 bits (131), Expect = 1.3e-04
Identity = 24/32 (75.00%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 1   HVMADRRVIGKMEFSMCTNNGRTLKGPDLSRV 33
           H++A+RRV GKM FS+CT NGRTLKG DLSRV
Sbjct: 97  HLVAERRVAGKMAFSVCTGNGRTLKGRDLSRV 128

[Close]

BLAST of MS013520 vs. NCBI nr
Match: GAV82234.1 (Senescence_reg domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 55.1 bits (131), Expect = 1.3e-04
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 1   HVMADRRVIGKMEFSMCTNNGRTLKGPDLSRV 33
           HVM  RR+ GKMEFS+CT NGRTLKG DLS+V
Sbjct: 69  HVMLGRRIAGKMEFSVCTGNGRTLKGRDLSQV 100

[Close]

BLAST of MS013520 vs. NCBI nr
Match: XP_004485964.1 (uncharacterized protein LOC101496240 [Cicer arietinum])

HSP 1 Score: 53.9 bits (128), Expect = 2.9e-04
Identity = 24/32 (75.00%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 1   HVMADRRVIGKMEFSMCTNNGRTLKGPDLSRV 33
           HV+  RR+ GKM FSMCT NGRTLKG DLSRV
Sbjct: 87  HVIMARRIAGKMTFSMCTGNGRTLKGRDLSRV 118

[Close]

BLAST of MS013520 vs. NCBI nr
Match: XP_020417803.1 (uncharacterized protein LOC18779701 [Prunus persica] >ONI10853.1 hypothetical protein PRUPE_4G072000 [Prunus persica])

HSP 1 Score: 53.5 bits (127), Expect = 3.8e-04
Identity = 23/32 (71.88%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 1   HVMADRRVIGKMEFSMCTNNGRTLKGPDLSRV 33
           HV+  RR+ GKMEFS+CT NGRTLKG DLS+V
Sbjct: 98  HVIVRRRIAGKMEFSVCTGNGRTLKGRDLSQV 129

[Close]

BLAST of MS013520 vs. NCBI nr
Match: XP_004295416.2 (PREDICTED: uncharacterized protein LOC101300038 [Fragaria vesca subsp. vesca])

HSP 1 Score: 53.5 bits (127), Expect = 3.8e-04
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 1   HVMADRRVIGKMEFSMCTNNGRTLKGPDLSRV 33
           H++  RRV GKMEFSMCT NGRTLKG DLS+V
Sbjct: 87  HLIVRRRVEGKMEFSMCTGNGRTLKGRDLSQV 118

[Close]

BLAST of MS013520 vs. ExPASy TrEMBL
Match: A0A1Q3CPP6 (Senescence_reg domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_25686 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.4e-05
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 1   HVMADRRVIGKMEFSMCTNNGRTLKGPDLSRV 33
           HVM  RR+ GKMEFS+CT NGRTLKG DLS+V
Sbjct: 69  HVMLGRRIAGKMEFSVCTGNGRTLKGRDLSQV 100

[Close]

BLAST of MS013520 vs. ExPASy TrEMBL
Match: A0A1S2XA03 (uncharacterized protein LOC101496240 OS=Cicer arietinum OX=3827 GN=LOC101496240 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.4e-04
Identity = 24/32 (75.00%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 1   HVMADRRVIGKMEFSMCTNNGRTLKGPDLSRV 33
           HV+  RR+ GKM FSMCT NGRTLKG DLSRV
Sbjct: 87  HVIMARRIAGKMTFSMCTGNGRTLKGRDLSRV 118

[Close]

BLAST of MS013520 vs. ExPASy TrEMBL
Match: A0A5E4FPL7 (PREDICTED: senescence regulator OS=Prunus dulcis OX=3755 GN=ALMOND_2B022542 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.9e-04
Identity = 23/32 (71.88%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 1   HVMADRRVIGKMEFSMCTNNGRTLKGPDLSRV 33
           HV+  RR+ GKMEFS+CT NGRTLKG DLS+V
Sbjct: 98  HVIVRRRIAGKMEFSVCTGNGRTLKGRDLSQV 129

[Close]

BLAST of MS013520 vs. ExPASy TrEMBL
Match: A0A251PGY9 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G072000 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.9e-04
Identity = 23/32 (71.88%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 1   HVMADRRVIGKMEFSMCTNNGRTLKGPDLSRV 33
           HV+  RR+ GKMEFS+CT NGRTLKG DLS+V
Sbjct: 98  HVIVRRRIAGKMEFSVCTGNGRTLKGRDLSQV 129

[Close]

BLAST of MS013520 vs. ExPASy TrEMBL
Match: A0A6J1K0L5 (uncharacterized protein LOC111490497 OS=Cucurbita maxima OX=3661 GN=LOC111490497 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.4e-04
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 1   HVMADRRVIGKMEFSMCTNNGRTLKGPDLSRV 33
           HV+A+RRV  KM FS+CT NGRTLKG DLSRV
Sbjct: 100 HVVAERRVARKMAFSVCTGNGRTLKGRDLSRV 131

[Close]

BLAST of MS013520 vs. TAIR 10
Match: AT1G29640.1 (Protein of unknown function, DUF584 )

HSP 1 Score: 44.3 bits (103), Expect = 2.2e-05
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 0


Query: 1   HVMADRRVI-GKMEFSMCTNNGRTLKGPDLSRV 33
           H++  RR+  G+M FS+CT NGRTLKG DLSRV
Sbjct: 95  HLIVGRRMEGGQMAFSVCTGNGRTLKGRDLSRV 127

[Close]

BLAST of MS013520 vs. TAIR 10
Match: AT2G34340.1 (Protein of unknown function, DUF584 )

HSP 1 Score: 43.5 bits (101), Expect = 3.7e-05
Identity = 20/33 (60.61%), Postives = 26/33 (78.79%), Query Frame = 0


Query: 1   HVMADRRVI-GKMEFSMCTNNGRTLKGPDLSRV 33
           H+M  RR+  G+M FS+C+ +GRTLKG DLSRV
Sbjct: 91  HIMIGRRIQGGQMAFSVCSGSGRTLKGRDLSRV 123

The following BLAST results are available for this feature:

BLAST of MS013520 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895158.1	1.3e-04	75.00	uncharacterized protein LOC120083461 [Benincasa hispida]	[more]
GAV82234.1	1.3e-04	75.00	Senescence_reg domain-containing protein [Cephalotus follicularis]	[more]
XP_004485964.1	2.9e-04	75.00	uncharacterized protein LOC101496240 [Cicer arietinum]	[more]
XP_020417803.1	3.8e-04	71.88	uncharacterized protein LOC18779701 [Prunus persica] >ONI10853.1 hypothetical pr...	[more]
XP_004295416.2	3.8e-04	75.00	PREDICTED: uncharacterized protein LOC101300038 [Fragaria vesca subsp. vesca]	[more]

BLAST of MS013520 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS013520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1Q3CPP6	6.4e-05	75.00	Senescence_reg domain-containing protein OS=Cephalotus follicularis OX=3775 GN=C...	[more]
A0A1S2XA03	1.4e-04	75.00	uncharacterized protein LOC101496240 OS=Cicer arietinum OX=3827 GN=LOC101496240 ...	[more]
A0A5E4FPL7	1.9e-04	71.88	PREDICTED: senescence regulator OS=Prunus dulcis OX=3755 GN=ALMOND_2B022542 PE=4...	[more]
A0A251PGY9	1.9e-04	71.88	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G072000 PE=4 SV=1	[more]
A0A6J1K0L5	2.4e-04	75.00	uncharacterized protein LOC111490497 OS=Cucurbita maxima OX=3661 GN=LOC111490497...	[more]

BLAST of MS013520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29640.1	2.2e-05	63.64	Protein of unknown function, DUF584	[more]
AT2G34340.1	3.7e-05	60.61	Protein of unknown function, DUF584	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007608	Senescence regulator S40	PFAM	PF04520	Senescence_reg	coord: 1..32 e-value: 3.4E-6 score: 28.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS013520.1	MS013520.1	mRNA