MS013513 (gene) Bitter gourd (TR) v1

Overview


Name	MS013513
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	60S ribosomal protein L32
Location	scaffold402: 2123797 .. 2125427 (+)
RNA-Seq Expression	MS013513
Synteny	MS013513

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTGCCTTTGCTCACGAAGAAGATCGTGAAGAAGAGGGCCCAGAAGTTCAAGAGGCCCCAGAGTGATCGAAAGATCTCCGTCAAGGTATATTTCTTTTCGCTCCGTATTTTCATCTTATCTATTTATGCAATATTAATAGAATTCGGAGTAAAGAATATGATGATAAGTATTGTCGCCCCAGTCTTAATTGCATCTATAGATGCATATGTTGACTGACAGTAGTATCTGATTCTCGTTACGGTTAGTAGCTCGTCTACCGTGATCTGGTTTTAGGAACATATTTTCATGATTTTAATATTTTTTTCCCTCTATATGATGAGGCTTGGCTTTTTGTCCTTAAGAAGGATCAGACGATAGAATGACTCTCAGACTGACTTGGGTCTTCGGATCCATTCTGGTGAATCTAAGATCGACTATCGGATCCTGGATACGACATTCCATATCAATTAGTATTGTTCAATTGAATTCGTTGTTTTAATCATCCTTGATTGTTATGTTAATCTCAGCCTATTATGTTAATATTTTTTGGAGATGGAGAGTCTGACCGACCTTTTATCTGATCCCTAAACAGCAGAAACGTCTTGCCACCGTAGTGTCAGCAGTCAATTTTTGTGTCCTTGTCTTTGTACTGGGGCATCAGGATTAGCATCCTGATATTGGTTTTACATAGCTTAAGTATTATTTAAGCACTGATTTTTTCGTAAGATATGCAACAAGACGTGATGATGTTAACCCATCATTTCTGCAGTTGAATGATGAATACTTTCATGCACTACCATCTGATCTTAGTTGTATATTGGAATCTAATAGTATAAGCCAAACTCACTTTCTTCTCTATCTGTTTTTGTTTTAAAATCTCCACTTTTACTGCAATCTATGATGCAAACTACCCACATTCCTGACTTCATGTGATTATATATCCAATATCACCATCTTTCGGCTGAGGTTGCAGTTGATATTTCCTTTTGTTTTATCATTTACTTTTTTTTGGTAACTATAGAACTGAATTTGCCCGTGGTATCTAGTGTTCAGATTTTCATCGAAGTAGCTGGACATTTCGTTTTTAAGGGCATATATTAATTCCATACAGGTCTTGCGACACAGTTAGCTTCTTGTAACCATAAGCTTTCTGTTACTAAATCCCTGCATACATATATATATTCTTTAAGAATGATCTGATTTTGAATCTTTGTCACATAAATTCTGTATTTCTCATCTTGTTGAATGCATCTGACAGGAAAGCTGGAGAAGACCAAAGGGTATTGATTCCAGAGTTAGAAGAAAGTTCAAAGGATGTACGCTGATGCCGAATATTGGTTATGGTACTGACAAAAAGACCCGTCACTACCTTCCTAATGGTTTCAAGAAGTTCGTTGTTCACAATGTCAAGGAGCTCGAGGTCTTGATGATGCACAACAGGTTTGTTGGACAATAACTTATAAATCCTTTAGCCTTTTACATTGTGCATTTGTCTTATACTTGTGTTGTCTTACTGCAGGACTTATTGTGCCGAAATTGCCCACGATGTTTCCACAAGGAAGAGGAAAGAGATTGTGGAAAGAGCAGCCCAACTTGATGTTGTAGTTACCAACAAGCTTGCTAGGTTGCGCAGCCAAGAGGATGAA

mRNA sequence

ATGGCGGTGCCTTTGCTCACGAAGAAGATCGTGAAGAAGAGGGCCCAGAAGTTCAAGAGGCCCCAGAGTGATCGAAAGATCTCCGTCAAGGAAAGCTGGAGAAGACCAAAGGGTATTGATTCCAGAGTTAGAAGAAAGTTCAAAGGATGTACGCTGATGCCGAATATTGGTTATGGTACTGACAAAAAGACCCGTCACTACCTTCCTAATGGTTTCAAGAAGTTCGTTGTTCACAATGTCAAGGAGCTCGAGGTCTTGATGATGCACAACAGGACTTATTGTGCCGAAATTGCCCACGATGTTTCCACAAGGAAGAGGAAAGAGATTGTGGAAAGAGCAGCCCAACTTGATGTTGTAGTTACCAACAAGCTTGCTAGGTTGCGCAGCCAAGAGGATGAA

Coding sequence (CDS)

ATGGCGGTGCCTTTGCTCACGAAGAAGATCGTGAAGAAGAGGGCCCAGAAGTTCAAGAGGCCCCAGAGTGATCGAAAGATCTCCGTCAAGGAAAGCTGGAGAAGACCAAAGGGTATTGATTCCAGAGTTAGAAGAAAGTTCAAAGGATGTACGCTGATGCCGAATATTGGTTATGGTACTGACAAAAAGACCCGTCACTACCTTCCTAATGGTTTCAAGAAGTTCGTTGTTCACAATGTCAAGGAGCTCGAGGTCTTGATGATGCACAACAGGACTTATTGTGCCGAAATTGCCCACGATGTTTCCACAAGGAAGAGGAAAGAGATTGTGGAAAGAGCAGCCCAACTTGATGTTGTAGTTACCAACAAGCTTGCTAGGTTGCGCAGCCAAGAGGATGAA

Protein sequence

MAVPLLTKKIVKKRAQKFKRPQSDRKISVKESWRRPKGIDSRVRRKFKGCTLMPNIGYGTDKKTRHYLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLARLRSQEDE

Homology

[Close]

BLAST of MS013513 vs. NCBI nr
Match: XP_022140193.1 (60S ribosomal protein L32-1 [Momordica charantia] >XP_022140194.1 60S ribosomal protein L32-1 [Momordica charantia])

HSP 1 Score: 262.3 bits (669), Expect = 2.3e-66
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MAVPLLTKKIVKKRAQKFKRPQSDRKISVKESWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKKIVKKRAQKFKRPQSDRKISVKESWRRPKGIDSRVRRKFKGCTLMPNIGYGT
Sbjct: 1   MAVPLLTKKIVKKRAQKFKRPQSDRKISVKESWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]

BLAST of MS013513 vs. NCBI nr
Match: KAG6573344.1 (60S ribosomal protein L32-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 258.5 bits (659), Expect = 3.3e-65
Identity = 131/133 (98.50%), Postives = 131/133 (98.50%), Query Frame = 0


Query: 1   MAVPLLTKKIVKKRAQKFKRPQSDRKISVKESWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKKIVKKR  KFKRPQSDRKISVKESWRRPKGIDSRVRRKFKGCTLMPNIGYGT
Sbjct: 1   MAVPLLTKKIVKKRTTKFKRPQSDRKISVKESWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]

BLAST of MS013513 vs. NCBI nr
Match: XP_023542869.1 (60S ribosomal protein L32-1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 258.1 bits (658), Expect = 4.3e-65
Identity = 130/133 (97.74%), Postives = 131/133 (98.50%), Query Frame = 0


Query: 1   MAVPLLTKKIVKKRAQKFKRPQSDRKISVKESWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKK+VKKR  KFKRPQSDRKISVKESWRRPKGIDSRVRRKFKGCTLMPNIGYGT
Sbjct: 1   MAVPLLTKKVVKKRTTKFKRPQSDRKISVKESWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]

BLAST of MS013513 vs. NCBI nr
Match: XP_022927470.1 (60S ribosomal protein L32-1 [Cucurbita moschata] >XP_022927471.1 60S ribosomal protein L32-1 [Cucurbita moschata] >XP_023001487.1 60S ribosomal protein L32-1 [Cucurbita maxima] >XP_023001488.1 60S ribosomal protein L32-1 [Cucurbita maxima] >KAG6583929.1 60S ribosomal protein L32-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019543.1 60S ribosomal protein L32-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 257.7 bits (657), Expect = 5.6e-65
Identity = 129/133 (96.99%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MAVPLLTKKIVKKRAQKFKRPQSDRKISVKESWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLL+KKIVKKR QKFKRPQSDRKISVKESWRRPKGIDSRVRRKFKGCTLMPNIGYGT
Sbjct: 1   MAVPLLSKKIVKKRTQKFKRPQSDRKISVKESWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNVKELE+LMMHNRTYCAEIAHDVST+KRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVKELEILMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]

BLAST of MS013513 vs. NCBI nr
Match: XP_023519489.1 (60S ribosomal protein L32-1-like [Cucurbita pepo subsp. pepo] >XP_023519490.1 60S ribosomal protein L32-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 257.3 bits (656), Expect = 7.3e-65
Identity = 128/133 (96.24%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MAVPLLTKKIVKKRAQKFKRPQSDRKISVKESWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLL+KK+VKKR QKFKRPQSDRKISVKESWRRPKGIDSRVRRKFKGCTLMPNIGYGT
Sbjct: 1   MAVPLLSKKVVKKRTQKFKRPQSDRKISVKESWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNVKELE+LMMHNRTYCAEIAHDVST+KRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVKELEILMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]

BLAST of MS013513 vs. ExPASy Swiss-Prot
Match: P49211 (60S ribosomal protein L32-1 OS=Arabidopsis thaliana OX=3702 GN=RPL32A PE=2 SV=2)

HSP 1 Score: 235.0 bits (598), Expect = 5.1e-61
Identity = 116/133 (87.22%), Postives = 127/133 (95.49%), Query Frame = 0


Query: 1   MAVPLLTKKIVKKRAQKFKRPQSDRKISVKESWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKK+VKKR+ KF RPQSDR+I+VKESWRRPKGIDSRVRRKFKG TLMPN+GYG+
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHN  ELE+LMMHNRTYCAEIAH+VST+KRK IVERA+QLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TN+LARLRSQEDE
Sbjct: 121 TNRLARLRSQEDE 133

[Close]

BLAST of MS013513 vs. ExPASy Swiss-Prot
Match: Q9FHG2 (60S ribosomal protein L32-2 OS=Arabidopsis thaliana OX=3702 GN=RPL32B PE=2 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 3.3e-60
Identity = 113/133 (84.96%), Postives = 126/133 (94.74%), Query Frame = 0


Query: 1   MAVPLLTKKIVKKRAQKFKRPQSDRKISVKESWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKK+VKKR+ KF RPQSDR+I+VKESWRRPKGIDSRVRRKFKG TLMPN+GYG+
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKF+VHN  ELE+LMMHNRTYCAEIAH++ST+KRK IVERA+QLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           +NKL RLRSQEDE
Sbjct: 121 SNKLGRLRSQEDE 133

[Close]

BLAST of MS013513 vs. ExPASy Swiss-Prot
Match: E2RKA8 (60S ribosomal protein L32 OS=Canis lupus familiaris OX=9615 GN=RPL32 PE=1 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 3.3e-44
Identity = 88/130 (67.69%), Postives = 112/130 (86.15%), Query Frame = 0


Query: 4   PLLTKKIVKKRAQKFKRPQSDRKISVKESWRRPKGIDSRVRRKFKGCTLMPNIGYGTDKK 63
           PL+  KIVKKR +KF R QSDR + +K +WR+P+GID+RVRR+FKG  LMPNIGYG++KK
Sbjct: 6   PLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKK 65

Query: 64  TRHYLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVVTNK 123
           T+H LP+GF+KF+VHNVKELEVL+M N++YCAEIAH+VS++ RK IVERAAQL + VTN 
Sbjct: 66  TKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNP 125

Query: 124 LARLRSQEDE 134
            ARLRS+E+E
Sbjct: 126 NARLRSEENE 135

[Close]

BLAST of MS013513 vs. ExPASy Swiss-Prot
Match: P62910 (60S ribosomal protein L32 OS=Homo sapiens OX=9606 GN=RPL32 PE=1 SV=2)

HSP 1 Score: 179.1 bits (453), Expect = 3.3e-44
Identity = 88/130 (67.69%), Postives = 112/130 (86.15%), Query Frame = 0


Query: 4   PLLTKKIVKKRAQKFKRPQSDRKISVKESWRRPKGIDSRVRRKFKGCTLMPNIGYGTDKK 63
           PL+  KIVKKR +KF R QSDR + +K +WR+P+GID+RVRR+FKG  LMPNIGYG++KK
Sbjct: 6   PLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKK 65

Query: 64  TRHYLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVVTNK 123
           T+H LP+GF+KF+VHNVKELEVL+M N++YCAEIAH+VS++ RK IVERAAQL + VTN 
Sbjct: 66  TKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNP 125

Query: 124 LARLRSQEDE 134
            ARLRS+E+E
Sbjct: 126 NARLRSEENE 135

[Close]

BLAST of MS013513 vs. ExPASy Swiss-Prot
Match: Q76KA3 (60S ribosomal protein L32 OS=Macaca fascicularis OX=9541 GN=RPL32 PE=2 SV=3)

HSP 1 Score: 179.1 bits (453), Expect = 3.3e-44
Identity = 88/130 (67.69%), Postives = 112/130 (86.15%), Query Frame = 0


Query: 4   PLLTKKIVKKRAQKFKRPQSDRKISVKESWRRPKGIDSRVRRKFKGCTLMPNIGYGTDKK 63
           PL+  KIVKKR +KF R QSDR + +K +WR+P+GID+RVRR+FKG  LMPNIGYG++KK
Sbjct: 6   PLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKK 65

Query: 64  TRHYLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVVTNK 123
           T+H LP+GF+KF+VHNVKELEVL+M N++YCAEIAH+VS++ RK IVERAAQL + VTN 
Sbjct: 66  TKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNP 125

Query: 124 LARLRSQEDE 134
            ARLRS+E+E
Sbjct: 126 NARLRSEENE 135

[Close]

BLAST of MS013513 vs. ExPASy TrEMBL
Match: A0A6J1CF23 (60S ribosomal protein L32-1 OS=Momordica charantia OX=3673 GN=LOC111010921 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.1e-66
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MAVPLLTKKIVKKRAQKFKRPQSDRKISVKESWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKKIVKKRAQKFKRPQSDRKISVKESWRRPKGIDSRVRRKFKGCTLMPNIGYGT
Sbjct: 1   MAVPLLTKKIVKKRAQKFKRPQSDRKISVKESWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]

BLAST of MS013513 vs. ExPASy TrEMBL
Match: A0A6J1KGP3 (60S ribosomal protein L32-1 OS=Cucurbita maxima OX=3661 GN=LOC111495610 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.7e-65
Identity = 129/133 (96.99%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MAVPLLTKKIVKKRAQKFKRPQSDRKISVKESWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLL+KKIVKKR QKFKRPQSDRKISVKESWRRPKGIDSRVRRKFKGCTLMPNIGYGT
Sbjct: 1   MAVPLLSKKIVKKRTQKFKRPQSDRKISVKESWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNVKELE+LMMHNRTYCAEIAHDVST+KRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVKELEILMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]

BLAST of MS013513 vs. ExPASy TrEMBL
Match: A0A6J1EP15 (60S ribosomal protein L32-1 OS=Cucurbita moschata OX=3662 GN=LOC111434287 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.7e-65
Identity = 129/133 (96.99%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MAVPLLTKKIVKKRAQKFKRPQSDRKISVKESWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLL+KKIVKKR QKFKRPQSDRKISVKESWRRPKGIDSRVRRKFKGCTLMPNIGYGT
Sbjct: 1   MAVPLLSKKIVKKRTQKFKRPQSDRKISVKESWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNVKELE+LMMHNRTYCAEIAHDVST+KRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVKELEILMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]

BLAST of MS013513 vs. ExPASy TrEMBL
Match: A0A6J1K6F1 (60S ribosomal protein L32-1-like OS=Cucurbita maxima OX=3661 GN=LOC111490500 PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 3.5e-65
Identity = 130/133 (97.74%), Postives = 131/133 (98.50%), Query Frame = 0


Query: 1   MAVPLLTKKIVKKRAQKFKRPQSDRKISVKESWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKKIVKKR  KFKRPQSDRKISVKE+WRRPKGIDSRVRRKFKGCTLMPNIGYGT
Sbjct: 1   MAVPLLTKKIVKKRTTKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]

BLAST of MS013513 vs. ExPASy TrEMBL
Match: A0A6J1GUI9 (60S ribosomal protein L32-1-like OS=Cucurbita moschata OX=3662 GN=LOC111457242 PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 3.5e-65
Identity = 130/133 (97.74%), Postives = 131/133 (98.50%), Query Frame = 0


Query: 1   MAVPLLTKKIVKKRAQKFKRPQSDRKISVKESWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKKIVKKR  KFKRPQSDRKISVKE+WRRPKGIDSRVRRKFKGCTLMPNIGYGT
Sbjct: 1   MAVPLLTKKIVKKRTTKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]

BLAST of MS013513 vs. TAIR 10
Match: AT4G18100.1 (Ribosomal protein L32e )

HSP 1 Score: 235.0 bits (598), Expect = 3.6e-62
Identity = 116/133 (87.22%), Postives = 127/133 (95.49%), Query Frame = 0


Query: 1   MAVPLLTKKIVKKRAQKFKRPQSDRKISVKESWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKK+VKKR+ KF RPQSDR+I+VKESWRRPKGIDSRVRRKFKG TLMPN+GYG+
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHN  ELE+LMMHNRTYCAEIAH+VST+KRK IVERA+QLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TN+LARLRSQEDE
Sbjct: 121 TNRLARLRSQEDE 133

[Close]

BLAST of MS013513 vs. TAIR 10
Match: AT5G46430.1 (Ribosomal protein L32e )

HSP 1 Score: 232.3 bits (591), Expect = 2.3e-61
Identity = 113/133 (84.96%), Postives = 126/133 (94.74%), Query Frame = 0


Query: 1   MAVPLLTKKIVKKRAQKFKRPQSDRKISVKESWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKK+VKKR+ KF RPQSDR+I+VKESWRRPKGIDSRVRRKFKG TLMPN+GYG+
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKF+VHN  ELE+LMMHNRTYCAEIAH++ST+KRK IVERA+QLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           +NKL RLRSQEDE
Sbjct: 121 SNKLGRLRSQEDE 133

[Close]

BLAST of MS013513 vs. TAIR 10
Match: AT5G46430.2 (Ribosomal protein L32e )

HSP 1 Score: 232.3 bits (591), Expect = 2.3e-61
Identity = 113/133 (84.96%), Postives = 126/133 (94.74%), Query Frame = 0


Query: 1   MAVPLLTKKIVKKRAQKFKRPQSDRKISVKESWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKK+VKKR+ KF RPQSDR+I+VKESWRRPKGIDSRVRRKFKG TLMPN+GYG+
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKF+VHN  ELE+LMMHNRTYCAEIAH++ST+KRK IVERA+QLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           +NKL RLRSQEDE
Sbjct: 121 SNKLGRLRSQEDE 133

The following BLAST results are available for this feature:

BLAST of MS013513 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140193.1	2.3e-66	100.00	60S ribosomal protein L32-1 [Momordica charantia] >XP_022140194.1 60S ribosomal ...	[more]
KAG6573344.1	3.3e-65	98.50	60S ribosomal protein L32-1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023542869.1	4.3e-65	97.74	60S ribosomal protein L32-1 [Cucurbita pepo subsp. pepo]	[more]
XP_022927470.1	5.6e-65	96.99	60S ribosomal protein L32-1 [Cucurbita moschata] >XP_022927471.1 60S ribosomal p...	[more]
XP_023519489.1	7.3e-65	96.24	60S ribosomal protein L32-1-like [Cucurbita pepo subsp. pepo] >XP_023519490.1 60...	[more]

BLAST of MS013513 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49211	5.1e-61	87.22	60S ribosomal protein L32-1 OS=Arabidopsis thaliana OX=3702 GN=RPL32A PE=2 SV=2	[more]
Q9FHG2	3.3e-60	84.96	60S ribosomal protein L32-2 OS=Arabidopsis thaliana OX=3702 GN=RPL32B PE=2 SV=1	[more]
E2RKA8	3.3e-44	67.69	60S ribosomal protein L32 OS=Canis lupus familiaris OX=9615 GN=RPL32 PE=1 SV=1	[more]
P62910	3.3e-44	67.69	60S ribosomal protein L32 OS=Homo sapiens OX=9606 GN=RPL32 PE=1 SV=2	[more]
Q76KA3	3.3e-44	67.69	60S ribosomal protein L32 OS=Macaca fascicularis OX=9541 GN=RPL32 PE=2 SV=3	[more]

BLAST of MS013513 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CF23	1.1e-66	100.00	60S ribosomal protein L32-1 OS=Momordica charantia OX=3673 GN=LOC111010921 PE=3 ...	[more]
A0A6J1KGP3	2.7e-65	96.99	60S ribosomal protein L32-1 OS=Cucurbita maxima OX=3661 GN=LOC111495610 PE=3 SV=...	[more]
A0A6J1EP15	2.7e-65	96.99	60S ribosomal protein L32-1 OS=Cucurbita moschata OX=3662 GN=LOC111434287 PE=3 S...	[more]
A0A6J1K6F1	3.5e-65	97.74	60S ribosomal protein L32-1-like OS=Cucurbita maxima OX=3661 GN=LOC111490500 PE=...	[more]
A0A6J1GUI9	3.5e-65	97.74	60S ribosomal protein L32-1-like OS=Cucurbita moschata OX=3662 GN=LOC111457242 P...	[more]

BLAST of MS013513 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G18100.1	3.6e-62	87.22	Ribosomal protein L32e	[more]
AT5G46430.1	2.3e-61	84.96	Ribosomal protein L32e	[more]
AT5G46430.2	2.3e-61	84.96	Ribosomal protein L32e	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001515	Ribosomal protein L32e	SMART	SM01393	Ribosomal_L32e_2	coord: 15..122 e-value: 3.0E-72 score: 256.0
IPR001515	Ribosomal protein L32e	PFAM	PF01655	Ribosomal_L32e	coord: 16..122 e-value: 4.9E-50 score: 168.5
IPR001515	Ribosomal protein L32e	PANTHER	PTHR23413	60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N	coord: 1..133
IPR001515	Ribosomal protein L32e	CDD	cd00513	Ribosomal_L32_L32e	coord: 17..122 e-value: 1.42579E-59 score: 177.337
None	No IPR available	PANTHER	PTHR23413:SF13	60S RIBOSOMAL PROTEIN L32-1-RELATED	coord: 1..133
IPR036351	Ribosomal protein L32e superfamily	SUPERFAMILY	52042	Ribosomal protein L32e	coord: 2..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS013513.1	MS013513.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome