MS013495 (gene) Bitter gourd (TR) v1

Overview


Name	MS013495
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold402: 1958867 .. 1959127 (+)
RNA-Seq Expression	MS013495
Synteny	MS013495

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGAAGAAATTGTTACAAAGAAAAGCAAGAGCCAGGGGAATAGCAACACGAGGTGGTCGATTTTCAAGAGATCGCTGAGGAGAGAGTTGCCAAAAATGAAGATGAAGCTCCTTGGATCGGCGTTTAAGTGGAAGACACTGACGAATTTGCAGATTTCTTTTGTGGATGGTTTGCTTTTCAAGATTGTTTCTACGTTGGAGGCCCTAGTCTTGGGCGGCGCTCTCTGTTTCTTCTTCCTCTGCTGTGGATGCCACTTT

mRNA sequence

ATGGACGAAGAAATTGTTACAAAGAAAAGCAAGAGCCAGGGGAATAGCAACACGAGGTGGTCGATTTTCAAGAGATCGCTGAGGAGAGAGTTGCCAAAAATGAAGATGAAGCTCCTTGGATCGGCGTTTAAGTGGAAGACACTGACGAATTTGCAGATTTCTTTTGTGGATGGTTTGCTTTTCAAGATTGTTTCTACGTTGGAGGCCCTAGTCTTGGGCGGCGCTCTCTGTTTCTTCTTCCTCTGCTGTGGATGCCACTTT

Coding sequence (CDS)

ATGGACGAAGAAATTGTTACAAAGAAAAGCAAGAGCCAGGGGAATAGCAACACGAGGTGGTCGATTTTCAAGAGATCGCTGAGGAGAGAGTTGCCAAAAATGAAGATGAAGCTCCTTGGATCGGCGTTTAAGTGGAAGACACTGACGAATTTGCAGATTTCTTTTGTGGATGGTTTGCTTTTCAAGATTGTTTCTACGTTGGAGGCCCTAGTCTTGGGCGGCGCTCTCTGTTTCTTCTTCCTCTGCTGTGGATGCCACTTT

Protein sequence

MDEEIVTKKSKSQGNSNTRWSIFKRSLRRELPKMKMKLLGSAFKWKTLTNLQISFVDGLLFKIVSTLEALVLGGALCFFFLCCGCHF

Homology

[Close]

BLAST of MS013495 vs. NCBI nr
Match: KAG6583910.1 (hypothetical protein SDJN03_19842, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117.9 bits (294), Expect = 4.5e-23
Identity = 63/87 (72.41%), Postives = 69/87 (79.31%), Query Frame = 0


Query: 1   MDEEIVTKKSKSQGNSNTRWSIFKRSLRRELPKMKMKLLGSAFKWKTLTNLQISFVDGLL 60
           MDEE+  K+SK  G+S T W+IFKRSLRRE    KMKLLGSAFKWK LTNLQISF+D LL
Sbjct: 36  MDEEVGAKRSKGHGSSATMWAIFKRSLRRE--SSKMKLLGSAFKWKRLTNLQISFMDNLL 95

Query: 61  FKIVSTLEALVLGGALCFFFLCCGCHF 88
           FKIVS LE +VL   LCFFFLC GCHF
Sbjct: 96  FKIVSMLEGVVLVATLCFFFLCFGCHF 120

[Close]

BLAST of MS013495 vs. NCBI nr
Match: KAG7019527.1 (hypothetical protein SDJN02_18488, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 95.5 bits (236), Expect = 2.4e-16
Identity = 52/72 (72.22%), Postives = 58/72 (80.56%), Query Frame = 0


Query: 1   MDEEIVTKKSKSQGNSNTRWSIFKRSLRRELPKMKMKLLGSAFKWKTLTNLQISFVDGLL 60
           MDEE+  K+SK  G+S T W+IFKRSLRRE    KMKLLGSAFKWK LTNLQISF+D LL
Sbjct: 47  MDEEVGAKRSKGHGSSATMWAIFKRSLRRE--SRKMKLLGSAFKWKRLTNLQISFMDNLL 106

Query: 61  FKIVSTLEALVL 73
           FKIVS LE +VL
Sbjct: 107 FKIVSMLEGVVL 116

[Close]

BLAST of MS013495 vs. NCBI nr
Match: KAG7012520.1 (hypothetical protein SDJN02_25272, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.4 bits (233), Expect = 5.3e-16
Identity = 53/80 (66.25%), Postives = 59/80 (73.75%), Query Frame = 0


Query: 1  MDEEIVTKKSKSQGNSNTRWSIFKRSLRRELPKMKMKLLGSAFKWKTLTNLQISFVDGLL 60
          MDE++  K SKS GN  TRW+IFKRSLRRE    KMKLLGSAFKWK LTNLQISF+D +L
Sbjct: 1  MDEKVGAKNSKSHGNQATRWAIFKRSLRRE--SRKMKLLGSAFKWKRLTNLQISFMDNIL 60

Query: 61 FKIVSTLEALVLGGALCFFF 81
          FK VS LE +VL     F F
Sbjct: 61 FKFVSVLEGVVLENTRRFGF 78

[Close]

BLAST of MS013495 vs. NCBI nr
Match: EOY27743.1 (Uncharacterized protein TCM_029517 [Theobroma cacao])

HSP 1 Score: 84.0 bits (206), Expect = 7.2e-13
Identity = 44/80 (55.00%), Postives = 55/80 (68.75%), Query Frame = 0


Query: 8   KKSKSQGNSNTRWSIFKRSLRRELPKMKMKLLGSAFKWKTLTNLQISFVDGLLFKIVSTL 67
           KK K       RW +FKR +++E    + K LGSAFKWK L N+Q+SFVD +LF+I S L
Sbjct: 113 KKKKEVMGGTKRWVLFKRLIKKE--SWRWKFLGSAFKWKRL-NIQLSFVDDVLFRIASVL 172

Query: 68  EALVLGGALCFFFLCCGCHF 88
           EA+ L   LCFF+LCCGCHF
Sbjct: 173 EAIFLVATLCFFYLCCGCHF 189

[Close]

BLAST of MS013495 vs. NCBI nr
Match: KAB2060781.1 (hypothetical protein ES319_A10G042000v1 [Gossypium barbadense] >KAG4178381.1 hypothetical protein ERO13_A10G039300v2 [Gossypium hirsutum] >TYG97514.1 hypothetical protein ES288_A10G044700v1 [Gossypium darwinii] >TYI04816.1 hypothetical protein ES332_A10G045600v1 [Gossypium tomentosum] >TYJ13308.1 hypothetical protein E1A91_A10G042900v1 [Gossypium mustelinum])

HSP 1 Score: 82.0 bits (201), Expect = 2.7e-12
Identity = 41/71 (57.75%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 19 RWSIFKRSLRRELPKMKMKLLGSAFKWKTLTNL--QISFVDGLLFKIVSTLEALVLGGAL 78
          RW +FKR +++EL   + K LGSAFKWK + +L  Q+SF+D +LFKI S LEA+ L   L
Sbjct: 8  RWMLFKRLMKKEL--WRWKFLGSAFKWKKIPSLTIQLSFIDDVLFKIASVLEAIFLVSTL 67

Query: 79 CFFFLCCGCHF 88
          CFF+LCCGCHF
Sbjct: 68 CFFYLCCGCHF 76

[Close]

BLAST of MS013495 vs. ExPASy TrEMBL
Match: A0A061GEB5 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_029517 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.5e-13
Identity = 44/80 (55.00%), Postives = 55/80 (68.75%), Query Frame = 0


Query: 8   KKSKSQGNSNTRWSIFKRSLRRELPKMKMKLLGSAFKWKTLTNLQISFVDGLLFKIVSTL 67
           KK K       RW +FKR +++E    + K LGSAFKWK L N+Q+SFVD +LF+I S L
Sbjct: 113 KKKKEVMGGTKRWVLFKRLIKKE--SWRWKFLGSAFKWKRL-NIQLSFVDDVLFRIASVL 172

Query: 68  EALVLGGALCFFFLCCGCHF 88
           EA+ L   LCFF+LCCGCHF
Sbjct: 173 EAIFLVATLCFFYLCCGCHF 189

[Close]

BLAST of MS013495 vs. ExPASy TrEMBL
Match: A0A5D2NM64 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A10G045600v1 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.3e-12
Identity = 41/71 (57.75%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 19 RWSIFKRSLRRELPKMKMKLLGSAFKWKTLTNL--QISFVDGLLFKIVSTLEALVLGGAL 78
          RW +FKR +++EL   + K LGSAFKWK + +L  Q+SF+D +LFKI S LEA+ L   L
Sbjct: 8  RWMLFKRLMKKEL--WRWKFLGSAFKWKKIPSLTIQLSFIDDVLFKIASVLEAIFLVSTL 67

Query: 79 CFFFLCCGCHF 88
          CFF+LCCGCHF
Sbjct: 68 CFFYLCCGCHF 76

[Close]

BLAST of MS013495 vs. ExPASy TrEMBL
Match: A0A5J5U090 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A10G042000v1 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.3e-12
Identity = 41/71 (57.75%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 19 RWSIFKRSLRRELPKMKMKLLGSAFKWKTLTNL--QISFVDGLLFKIVSTLEALVLGGAL 78
          RW +FKR +++EL   + K LGSAFKWK + +L  Q+SF+D +LFKI S LEA+ L   L
Sbjct: 8  RWMLFKRLMKKEL--WRWKFLGSAFKWKKIPSLTIQLSFIDDVLFKIASVLEAIFLVSTL 67

Query: 79 CFFFLCCGCHF 88
          CFF+LCCGCHF
Sbjct: 68 CFFYLCCGCHF 76

[Close]

BLAST of MS013495 vs. ExPASy TrEMBL
Match: A0A5D2EUX7 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A10G044700v1 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.3e-12
Identity = 41/71 (57.75%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 19 RWSIFKRSLRRELPKMKMKLLGSAFKWKTLTNL--QISFVDGLLFKIVSTLEALVLGGAL 78
          RW +FKR +++EL   + K LGSAFKWK + +L  Q+SF+D +LFKI S LEA+ L   L
Sbjct: 8  RWMLFKRLMKKEL--WRWKFLGSAFKWKKIPSLTIQLSFIDDVLFKIASVLEAIFLVSTL 67

Query: 79 CFFFLCCGCHF 88
          CFF+LCCGCHF
Sbjct: 68 CFFYLCCGCHF 76

[Close]

BLAST of MS013495 vs. ExPASy TrEMBL
Match: A0A5D2XH21 (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A10G042900v1 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.3e-12
Identity = 41/71 (57.75%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 19 RWSIFKRSLRRELPKMKMKLLGSAFKWKTLTNL--QISFVDGLLFKIVSTLEALVLGGAL 78
          RW +FKR +++EL   + K LGSAFKWK + +L  Q+SF+D +LFKI S LEA+ L   L
Sbjct: 8  RWMLFKRLMKKEL--WRWKFLGSAFKWKKIPSLTIQLSFIDDVLFKIASVLEAIFLVSTL 67

Query: 79 CFFFLCCGCHF 88
          CFF+LCCGCHF
Sbjct: 68 CFFYLCCGCHF 76

[Close]

BLAST of MS013495 vs. TAIR 10
Match: AT5G46295.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06475.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 54.7 bits (130), Expect = 4.4e-08
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 21 SIFKRSLRRELPKMKMKLLGSAFKWKTLTNLQISFVDGLLFKIVSTLEALVLGGALCFFF 80
          SI+K +  +E  ++K   LG   KWK L NL+++F++ L ++I+S +EA+VL   L FFF
Sbjct: 8  SIWKTT--KERTRLKFLGLGGGLKWKRL-NLKMTFLETLRYRIMSIIEAMVLVSKLAFFF 67

Query: 81 LCCGCHF 88
          LCCGC F
Sbjct: 68 LCCGCKF 71

[Close]

BLAST of MS013495 vs. TAIR 10
Match: AT1G06475.1 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 50.1 bits (118), Expect = 1.1e-06
Identity = 22/47 (46.81%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 41 SAFKWKTLTNLQIS-FVDGLLFKIVSTLEALVLGGALCFFFLCCGCH 87
          S+ KWK +  + ++  VDG+++K++  +EA VL   LCFF+LCCGCH
Sbjct: 46 SSAKWKRVEIIMLTEIVDGVVYKVMYVVEAFVLVSTLCFFYLCCGCH 92

The following BLAST results are available for this feature:

BLAST of MS013495 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6583910.1	4.5e-23	72.41	hypothetical protein SDJN03_19842, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7019527.1	2.4e-16	72.22	hypothetical protein SDJN02_18488, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG7012520.1	5.3e-16	66.25	hypothetical protein SDJN02_25272, partial [Cucurbita argyrosperma subsp. argyro...	[more]
EOY27743.1	7.2e-13	55.00	Uncharacterized protein TCM_029517 [Theobroma cacao]	[more]
KAB2060781.1	2.7e-12	57.75	hypothetical protein ES319_A10G042000v1 [Gossypium barbadense] >KAG4178381.1 hyp...	[more]

BLAST of MS013495 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS013495 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A061GEB5	3.5e-13	55.00	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_029517 PE=4 SV=1	[more]
A0A5D2NM64	1.3e-12	57.75	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A10G045600v1 P...	[more]
A0A5J5U090	1.3e-12	57.75	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A10G042000v1 PE...	[more]
A0A5D2EUX7	1.3e-12	57.75	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A10G044700v1 PE=...	[more]
A0A5D2XH21	1.3e-12	57.75	Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A10G042900v1 P...	[more]

BLAST of MS013495 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46295.1	4.4e-08	46.27	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G06475.1	1.1e-06	46.81	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33726	TRANSMEMBRANE PROTEIN	coord: 17..87
None	No IPR available	PANTHER	PTHR33726:SF3	TRANSMEMBRANE PROTEIN	coord: 17..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS013495.1	MS013495.1	mRNA