MS013475 (gene) Bitter gourd (TR) v1

Overview
NameMS013475
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein TIFY 5A-like
Locationscaffold402: 1812104 .. 1812528 (+)
RNA-Seq ExpressionMS013475
SyntenyMS013475
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACCACAACACACCCTCCACTGCAACTTGGAGCTCTGCCTCTCTCCGCCGCCGGCGCCACCTTCCTCCGCCACCGCCGCTGAATCAACAACCACTTCAACTTCCGACCACCACCACCCCATGGTCAATTATCATCATGGATTCCCTGTTACTGATCTTACAGAGCTCCAGGTACATATATTGCTCAAATTTACCTTTTAATTGTTGTCAAGAACAAACCTAACTCAATAGTAATTAATTTGGGTTATGGGTATTGGCAGGCGAGAGCGATCATAATAGGAGCCACACGACAGATGGAGGAGAGGAAGACGACATGTCGGACCAGATCGGCGGAGGAGAAATCAAGCTCCATGAAGAGATCGCTGCAGAGGTTTTTACAGAAGAGAAAGCATCGCATACAAACACTCACACCCTACACTACT

mRNA sequence

ATGGAACCACAACACACCCTCCACTGCAACTTGGAGCTCTGCCTCTCTCCGCCGCCGGCGCCACCTTCCTCCGCCACCGCCGCTGAATCAACAACCACTTCAACTTCCGACCACCACCACCCCATGGTCAATTATCATCATGGATTCCCTGTTACTGATCTTACAGAGCTCCAGGCGAGAGCGATCATAATAGGAGCCACACGACAGATGGAGGAGAGGAAGACGACATGTCGGACCAGATCGGCGGAGGAGAAATCAAGCTCCATGAAGAGATCGCTGCAGAGGTTTTTACAGAAGAGAAAGCATCGCATACAAACACTCACACCCTACACTACT

Coding sequence (CDS)

ATGGAACCACAACACACCCTCCACTGCAACTTGGAGCTCTGCCTCTCTCCGCCGCCGGCGCCACCTTCCTCCGCCACCGCCGCTGAATCAACAACCACTTCAACTTCCGACCACCACCACCCCATGGTCAATTATCATCATGGATTCCCTGTTACTGATCTTACAGAGCTCCAGGCGAGAGCGATCATAATAGGAGCCACACGACAGATGGAGGAGAGGAAGACGACATGTCGGACCAGATCGGCGGAGGAGAAATCAAGCTCCATGAAGAGATCGCTGCAGAGGTTTTTACAGAAGAGAAAGCATCGCATACAAACACTCACACCCTACACTACT

Protein sequence

MEPQHTLHCNLELCLSPPPAPPSSATAAESTTTSTSDHHHPMVNYHHGFPVTDLTELQARAIIIGATRQMEERKTTCRTRSAEEKSSSMKRSLQRFLQKRKHRIQTLTPYTT
Homology
BLAST of MS013475 vs. NCBI nr
Match: XP_022140147.1 (protein TIFY 5A-like [Momordica charantia])

HSP 1 Score: 220.7 bits (561), Expect = 6.3e-54
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0

Query: 1   MEPQHTLHCNLELCLSPPPAPPSSATAAESTTTSTSDHHHPMVNYHHGFPVTDLTELQAR 60
           MEPQHTLHCNLELCLSPPPAPPSSATAAESTTTSTSDHHHPMVNYHHGFPVTDLTELQAR
Sbjct: 10  MEPQHTLHCNLELCLSPPPAPPSSATAAESTTTSTSDHHHPMVNYHHGFPVTDLTELQAR 69

Query: 61  AIIIGATRQMEERKTTCRTRSAEEKSSSMKRSLQRFLQKRKHRIQTLTPYTT 113
           AIIIGATRQMEERKTTCRTRSAEEKSSSMKRSLQRFLQKRKHRIQTLTPYTT
Sbjct: 70  AIIIGATRQMEERKTTCRTRSAEEKSSSMKRSLQRFLQKRKHRIQTLTPYTT 121

BLAST of MS013475 vs. NCBI nr
Match: XP_023520316.1 (protein TIFY 5A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-18
Identity = 67/118 (56.78%), Postives = 82/118 (69.49%), Query Frame = 0

Query: 4   QHTLHCNLELCLSPPPAPPSSATA-AESTTTSTSDHHHPMVNYHHGFPVTDLTELQARAI 63
           ++ L+CNLELCLSPP + PS+ATA A ST+TS  +H  P        P+ DLTELQARAI
Sbjct: 2   ENILNCNLELCLSPPSSSPSTATATANSTSTSCHNHIDPT-----RVPIPDLTELQARAI 61

Query: 64  IIGATRQM--EERKTTCRTRSAEEK-------SSSMKRSLQRFLQKRKHRIQTLTPYT 112
           I+ AT QM  E R TTC   S +++       S SM+RSLQRFLQKRKHRIQTL+PY+
Sbjct: 62  IVRATTQMEVERRLTTCHISSPKQRVSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYS 114

BLAST of MS013475 vs. NCBI nr
Match: XP_038895134.1 (protein TIFY 5A-like [Benincasa hispida])

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-17
Identity = 68/121 (56.20%), Postives = 80/121 (66.12%), Query Frame = 0

Query: 1   MEPQHTLHCNLELCLSPPPAPPSSATAAESTTTSTSDHHHPMVNYHHGFPVTDLTELQAR 60
           MEP   L+CNLELCLSPP + PS+     + +TSTS H+H         P+ DLTELQAR
Sbjct: 1   MEP--FLNCNLELCLSPPSSSPSTIAVTATNSTSTSQHNHLSPT---EVPILDLTELQAR 60

Query: 61  AIIIGATRQME-ERKTTCR------TRSAEEKSS---SMKRSLQRFLQKRKHRIQTLTPY 112
           AII+ ATRQME ER++T R      T     KS    SM+RSLQRFLQKRKHR QTL+PY
Sbjct: 61  AIIVRATRQMEAERRSTTRRISLPTTEQISMKSGASPSMRRSLQRFLQKRKHRTQTLSPY 116

BLAST of MS013475 vs. NCBI nr
Match: KAG7019513.1 (Protein TIFY 5A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-17
Identity = 66/118 (55.93%), Postives = 80/118 (67.80%), Query Frame = 0

Query: 4   QHTLHCNLELCLSPPPAPPSSATA-AESTTTSTSDHHHPMVNYHHGFPVTDLTELQARAI 63
           ++ L+CNLELCLSPP + PS+ATA A ST+TS  +H  P        P+ D TELQARAI
Sbjct: 2   ENILNCNLELCLSPPSSSPSTATATANSTSTSCHNHIDPT-----RVPIPDHTELQARAI 61

Query: 64  IIGATRQM--EERKTTCRTRSAEEK-------SSSMKRSLQRFLQKRKHRIQTLTPYT 112
           I+ AT QM  E R TTC   S  ++       S SM+RSLQRFLQKRKHRIQTL+PY+
Sbjct: 62  IVRATTQMEAERRLTTCHISSPTQRVSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYS 114

BLAST of MS013475 vs. NCBI nr
Match: XP_023001493.1 (protein TIFY 5A-like [Cucurbita maxima])

HSP 1 Score: 99.4 bits (246), Expect = 2.1e-17
Identity = 66/118 (55.93%), Postives = 79/118 (66.95%), Query Frame = 0

Query: 4   QHTLHCNLELCLSPPPAPPS-SATAAESTTTSTSDHHHPMVNYHHGFPVTDLTELQARAI 63
           ++ L+CNLELCLSPP + PS +AT A + +TSTS H+HP        P+ DLTELQARAI
Sbjct: 2   ENILNCNLELCLSPPSSSPSTTATVAAANSTSTSCHNHPT-----RVPLLDLTELQARAI 61

Query: 64  IIGATRQM--EERKTTCRTRSAEE-------KSSSMKRSLQRFLQKRKHRIQTLTPYT 112
           I+ A  QM  E R TTC      E        S SM+RSLQRFLQKRKHRIQTL+PY+
Sbjct: 62  IVRAITQMEAERRLTTCYISLPTEPMSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYS 114

BLAST of MS013475 vs. ExPASy TrEMBL
Match: A0A6J1CG02 (protein TIFY 5A-like OS=Momordica charantia OX=3673 GN=LOC111010877 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 3.1e-54
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0

Query: 1   MEPQHTLHCNLELCLSPPPAPPSSATAAESTTTSTSDHHHPMVNYHHGFPVTDLTELQAR 60
           MEPQHTLHCNLELCLSPPPAPPSSATAAESTTTSTSDHHHPMVNYHHGFPVTDLTELQAR
Sbjct: 10  MEPQHTLHCNLELCLSPPPAPPSSATAAESTTTSTSDHHHPMVNYHHGFPVTDLTELQAR 69

Query: 61  AIIIGATRQMEERKTTCRTRSAEEKSSSMKRSLQRFLQKRKHRIQTLTPYTT 113
           AIIIGATRQMEERKTTCRTRSAEEKSSSMKRSLQRFLQKRKHRIQTLTPYTT
Sbjct: 70  AIIIGATRQMEERKTTCRTRSAEEKSSSMKRSLQRFLQKRKHRIQTLTPYTT 121

BLAST of MS013475 vs. ExPASy TrEMBL
Match: A0A6J1KQP6 (protein TIFY 5A-like OS=Cucurbita maxima OX=3661 GN=LOC111495613 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.0e-17
Identity = 66/118 (55.93%), Postives = 79/118 (66.95%), Query Frame = 0

Query: 4   QHTLHCNLELCLSPPPAPPS-SATAAESTTTSTSDHHHPMVNYHHGFPVTDLTELQARAI 63
           ++ L+CNLELCLSPP + PS +AT A + +TSTS H+HP        P+ DLTELQARAI
Sbjct: 2   ENILNCNLELCLSPPSSSPSTTATVAAANSTSTSCHNHPT-----RVPLLDLTELQARAI 61

Query: 64  IIGATRQM--EERKTTCRTRSAEE-------KSSSMKRSLQRFLQKRKHRIQTLTPYT 112
           I+ A  QM  E R TTC      E        S SM+RSLQRFLQKRKHRIQTL+PY+
Sbjct: 62  IVRAITQMEAERRLTTCYISLPTEPMSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYS 114

BLAST of MS013475 vs. ExPASy TrEMBL
Match: A0A6J1EN30 (protein TIFY 5A-like OS=Cucurbita moschata OX=3662 GN=LOC111434085 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.8e-17
Identity = 65/117 (55.56%), Postives = 79/117 (67.52%), Query Frame = 0

Query: 4   QHTLHCNLELCLSPPPAPPSSATAAESTTTSTSDHHHPMVNYHHGFPVTDLTELQARAII 63
           ++ L+CNLELCLSPP + PS+AT A ST+TS  +H  P        P+ D TELQARAII
Sbjct: 2   ENILNCNLELCLSPPSSSPSTAT-ANSTSTSCHNHIDPT-----RVPIPDHTELQARAII 61

Query: 64  IGATRQM--EERKTTCRTRSAEEK-------SSSMKRSLQRFLQKRKHRIQTLTPYT 112
           + AT QM  E R TTC   S  ++       S SM+RSLQRFLQKRKHRIQTL+PY+
Sbjct: 62  VRATTQMEAERRLTTCHISSPTQRVSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYS 112

BLAST of MS013475 vs. ExPASy TrEMBL
Match: A0A1S3BA64 (protein TIFY 5A-like OS=Cucumis melo OX=3656 GN=LOC103487726 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.5e-16
Identity = 65/123 (52.85%), Postives = 81/123 (65.85%), Query Frame = 0

Query: 4   QHTLHCNLELCLSPPPAPPS---SATAAESTTTSTSDHHH--PMVNYHHGFPVTDLTELQ 63
           +H  + NLELCLSPP + PS   + T A + + S+S H+H  P+     G P  DLTE+Q
Sbjct: 2   EHFPNFNLELCLSPPSSSPSTTTTTTTAAAASNSSSQHNHITPI-----GVPTPDLTEIQ 61

Query: 64  ARAIIIGATRQM--EERKTTCRTRSAEEK--------SSSMKRSLQRFLQKRKHRIQTLT 112
           A+AII+ ATRQM  E R TTCR  S+ E+        S SM+RSLQRFLQKRK RIQTL+
Sbjct: 62  AKAIIVEATRQMEAERRWTTCRISSSAERVWMRSGEASPSMRRSLQRFLQKRKLRIQTLS 119

BLAST of MS013475 vs. ExPASy TrEMBL
Match: A0A0A0LX13 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G435790 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 7.6e-13
Identity = 61/124 (49.19%), Postives = 77/124 (62.10%), Query Frame = 0

Query: 1   MEPQHTLHCNLELCLSPPPAPPSSATAA---ESTTTSTSDHHHPMVNYHHGFPVTDLTEL 60
           MEP      NLELCLSPP + PS+ T+     S +TS  +H  P+     G    DLTE+
Sbjct: 1   MEPLSNF--NLELCLSPPSSSPSTTTSTLPLASNSTSQPNHITPI-----GLFTPDLTEI 60

Query: 61  QARAIIIGATRQMEERKT---TCRTRSAEEK--------SSSMKRSLQRFLQKRKHRIQT 111
           QA+AII+ ATRQME  ++   TCR  S+ E+        S S++RSLQRFLQKRK RIQT
Sbjct: 61  QAKAIIVQATRQMEAERSRWRTCRISSSAERVLMTNGEASPSLRRSLQRFLQKRKLRIQT 117

BLAST of MS013475 vs. TAIR 10
Match: AT1G30135.1 (jasmonate-zim-domain protein 8 )

HSP 1 Score: 41.6 bits (96), Expect = 4.9e-04
Identity = 39/122 (31.97%), Postives = 61/122 (50.00%), Query Frame = 0

Query: 8   HCNLELCLSPPPAPPSSATAAESTTTSTSDHHHP------MVNYHHGFPV--TDLTELQA 67
           +C+LEL L P      S+       +++S +  P      +  +++G     +D+T LQA
Sbjct: 6   NCDLELRLFPTSYDSDSSDTTSVVESTSSGNPQPNEESQRITIFYNGKMCFSSDVTHLQA 65

Query: 68  RAIIIGATRQME-----------ERKTTCRTRSAEEKSSSMKRSLQRFLQKRKHRIQTLT 111
           R+II  A+R+M+            + T+          +SMK+SLQ FLQKRK RIQ  +
Sbjct: 66  RSIISIASREMKTKSSSNGSDPPNKSTSFHHNQLPNPKASMKKSLQSFLQKRKIRIQATS 125

BLAST of MS013475 vs. TAIR 10
Match: AT2G34600.1 (jasmonate-zim-domain protein 7 )

HSP 1 Score: 41.6 bits (96), Expect = 4.9e-04
Identity = 28/72 (38.89%), Postives = 40/72 (55.56%), Query Frame = 0

Query: 52  TDLTELQARAIIIGATRQMEERKTTCRTRSAEE-------------KSSSMKRSLQRFLQ 111
           +DLT L+A AI+  A+R +EE+  + R+    +             + +SMKRSL  FLQ
Sbjct: 73  SDLTHLEANAILSLASRDVEEKSLSLRSSDGSDPPTIPNNSTRFHYQKASMKRSLHSFLQ 132

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022140147.16.3e-54100.00protein TIFY 5A-like [Momordica charantia][more]
XP_023520316.11.1e-1856.78protein TIFY 5A-like [Cucurbita pepo subsp. pepo][more]
XP_038895134.11.2e-1756.20protein TIFY 5A-like [Benincasa hispida][more]
KAG7019513.11.2e-1755.93Protein TIFY 5A [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023001493.12.1e-1755.93protein TIFY 5A-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CG023.1e-54100.00protein TIFY 5A-like OS=Momordica charantia OX=3673 GN=LOC111010877 PE=4 SV=1[more]
A0A6J1KQP61.0e-1755.93protein TIFY 5A-like OS=Cucurbita maxima OX=3661 GN=LOC111495613 PE=4 SV=1[more]
A0A6J1EN301.8e-1755.56protein TIFY 5A-like OS=Cucurbita moschata OX=3662 GN=LOC111434085 PE=4 SV=1[more]
A0A1S3BA642.5e-1652.85protein TIFY 5A-like OS=Cucumis melo OX=3656 GN=LOC103487726 PE=4 SV=1[more]
A0A0A0LX137.6e-1349.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G435790 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G30135.14.9e-0431.97jasmonate-zim-domain protein 8 [more]
AT2G34600.14.9e-0438.89jasmonate-zim-domain protein 7 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018467CO/COL/TOC1, conserved sitePFAMPF09425Jas_motifcoord: 90..110
e-value: 1.9E-9
score: 37.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 70..112
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..44
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 71..90
NoneNo IPR availablePANTHERPTHR33077:SF17PROTEIN TIFY 5Bcoord: 8..110
IPR040390TIFY/JAZ familyPANTHERPTHR33077PROTEIN TIFY 4A-RELATED-RELATEDcoord: 8..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS013475.1MS013475.1mRNA