MS013475 (gene) Bitter gourd (TR) v1

Overview


Name	MS013475
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein TIFY 5A-like
Location	scaffold402: 1812104 .. 1812528 (+)
RNA-Seq Expression	MS013475
Synteny	MS013475

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCACAACACACCCTCCACTGCAACTTGGAGCTCTGCCTCTCTCCGCCGCCGGCGCCACCTTCCTCCGCCACCGCCGCTGAATCAACAACCACTTCAACTTCCGACCACCACCACCCCATGGTCAATTATCATCATGGATTCCCTGTTACTGATCTTACAGAGCTCCAGGTACATATATTGCTCAAATTTACCTTTTAATTGTTGTCAAGAACAAACCTAACTCAATAGTAATTAATTTGGGTTATGGGTATTGGCAGGCGAGAGCGATCATAATAGGAGCCACACGACAGATGGAGGAGAGGAAGACGACATGTCGGACCAGATCGGCGGAGGAGAAATCAAGCTCCATGAAGAGATCGCTGCAGAGGTTTTTACAGAAGAGAAAGCATCGCATACAAACACTCACACCCTACACTACT

mRNA sequence

ATGGAACCACAACACACCCTCCACTGCAACTTGGAGCTCTGCCTCTCTCCGCCGCCGGCGCCACCTTCCTCCGCCACCGCCGCTGAATCAACAACCACTTCAACTTCCGACCACCACCACCCCATGGTCAATTATCATCATGGATTCCCTGTTACTGATCTTACAGAGCTCCAGGCGAGAGCGATCATAATAGGAGCCACACGACAGATGGAGGAGAGGAAGACGACATGTCGGACCAGATCGGCGGAGGAGAAATCAAGCTCCATGAAGAGATCGCTGCAGAGGTTTTTACAGAAGAGAAAGCATCGCATACAAACACTCACACCCTACACTACT

Coding sequence (CDS)

ATGGAACCACAACACACCCTCCACTGCAACTTGGAGCTCTGCCTCTCTCCGCCGCCGGCGCCACCTTCCTCCGCCACCGCCGCTGAATCAACAACCACTTCAACTTCCGACCACCACCACCCCATGGTCAATTATCATCATGGATTCCCTGTTACTGATCTTACAGAGCTCCAGGCGAGAGCGATCATAATAGGAGCCACACGACAGATGGAGGAGAGGAAGACGACATGTCGGACCAGATCGGCGGAGGAGAAATCAAGCTCCATGAAGAGATCGCTGCAGAGGTTTTTACAGAAGAGAAAGCATCGCATACAAACACTCACACCCTACACTACT

Protein sequence

MEPQHTLHCNLELCLSPPPAPPSSATAAESTTTSTSDHHHPMVNYHHGFPVTDLTELQARAIIIGATRQMEERKTTCRTRSAEEKSSSMKRSLQRFLQKRKHRIQTLTPYTT

Homology

[Close]

BLAST of MS013475 vs. NCBI nr
Match: XP_022140147.1 (protein TIFY 5A-like [Momordica charantia])

HSP 1 Score: 220.7 bits (561), Expect = 6.3e-54
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MEPQHTLHCNLELCLSPPPAPPSSATAAESTTTSTSDHHHPMVNYHHGFPVTDLTELQAR 60
           MEPQHTLHCNLELCLSPPPAPPSSATAAESTTTSTSDHHHPMVNYHHGFPVTDLTELQAR
Sbjct: 10  MEPQHTLHCNLELCLSPPPAPPSSATAAESTTTSTSDHHHPMVNYHHGFPVTDLTELQAR 69

Query: 61  AIIIGATRQMEERKTTCRTRSAEEKSSSMKRSLQRFLQKRKHRIQTLTPYTT 113
           AIIIGATRQMEERKTTCRTRSAEEKSSSMKRSLQRFLQKRKHRIQTLTPYTT
Sbjct: 70  AIIIGATRQMEERKTTCRTRSAEEKSSSMKRSLQRFLQKRKHRIQTLTPYTT 121

[Close]

BLAST of MS013475 vs. NCBI nr
Match: XP_023520316.1 (protein TIFY 5A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-18
Identity = 67/118 (56.78%), Postives = 82/118 (69.49%), Query Frame = 0


Query: 4   QHTLHCNLELCLSPPPAPPSSATA-AESTTTSTSDHHHPMVNYHHGFPVTDLTELQARAI 63
           ++ L+CNLELCLSPP + PS+ATA A ST+TS  +H  P        P+ DLTELQARAI
Sbjct: 2   ENILNCNLELCLSPPSSSPSTATATANSTSTSCHNHIDPT-----RVPIPDLTELQARAI 61

Query: 64  IIGATRQM--EERKTTCRTRSAEEK-------SSSMKRSLQRFLQKRKHRIQTLTPYT 112
           I+ AT QM  E R TTC   S +++       S SM+RSLQRFLQKRKHRIQTL+PY+
Sbjct: 62  IVRATTQMEVERRLTTCHISSPKQRVSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYS 114

[Close]

BLAST of MS013475 vs. NCBI nr
Match: XP_038895134.1 (protein TIFY 5A-like [Benincasa hispida])

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-17
Identity = 68/121 (56.20%), Postives = 80/121 (66.12%), Query Frame = 0


Query: 1   MEPQHTLHCNLELCLSPPPAPPSSATAAESTTTSTSDHHHPMVNYHHGFPVTDLTELQAR 60
           MEP   L+CNLELCLSPP + PS+     + +TSTS H+H         P+ DLTELQAR
Sbjct: 1   MEP--FLNCNLELCLSPPSSSPSTIAVTATNSTSTSQHNHLSPT---EVPILDLTELQAR 60

Query: 61  AIIIGATRQME-ERKTTCR------TRSAEEKSS---SMKRSLQRFLQKRKHRIQTLTPY 112
           AII+ ATRQME ER++T R      T     KS    SM+RSLQRFLQKRKHR QTL+PY
Sbjct: 61  AIIVRATRQMEAERRSTTRRISLPTTEQISMKSGASPSMRRSLQRFLQKRKHRTQTLSPY 116

[Close]

BLAST of MS013475 vs. NCBI nr
Match: KAG7019513.1 (Protein TIFY 5A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-17
Identity = 66/118 (55.93%), Postives = 80/118 (67.80%), Query Frame = 0


Query: 4   QHTLHCNLELCLSPPPAPPSSATA-AESTTTSTSDHHHPMVNYHHGFPVTDLTELQARAI 63
           ++ L+CNLELCLSPP + PS+ATA A ST+TS  +H  P        P+ D TELQARAI
Sbjct: 2   ENILNCNLELCLSPPSSSPSTATATANSTSTSCHNHIDPT-----RVPIPDHTELQARAI 61

Query: 64  IIGATRQM--EERKTTCRTRSAEEK-------SSSMKRSLQRFLQKRKHRIQTLTPYT 112
           I+ AT QM  E R TTC   S  ++       S SM+RSLQRFLQKRKHRIQTL+PY+
Sbjct: 62  IVRATTQMEAERRLTTCHISSPTQRVSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYS 114

[Close]

BLAST of MS013475 vs. NCBI nr
Match: XP_023001493.1 (protein TIFY 5A-like [Cucurbita maxima])

HSP 1 Score: 99.4 bits (246), Expect = 2.1e-17
Identity = 66/118 (55.93%), Postives = 79/118 (66.95%), Query Frame = 0


Query: 4   QHTLHCNLELCLSPPPAPPS-SATAAESTTTSTSDHHHPMVNYHHGFPVTDLTELQARAI 63
           ++ L+CNLELCLSPP + PS +AT A + +TSTS H+HP        P+ DLTELQARAI
Sbjct: 2   ENILNCNLELCLSPPSSSPSTTATVAAANSTSTSCHNHPT-----RVPLLDLTELQARAI 61

Query: 64  IIGATRQM--EERKTTCRTRSAEE-------KSSSMKRSLQRFLQKRKHRIQTLTPYT 112
           I+ A  QM  E R TTC      E        S SM+RSLQRFLQKRKHRIQTL+PY+
Sbjct: 62  IVRAITQMEAERRLTTCYISLPTEPMSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYS 114

[Close]

BLAST of MS013475 vs. ExPASy TrEMBL
Match: A0A6J1CG02 (protein TIFY 5A-like OS=Momordica charantia OX=3673 GN=LOC111010877 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 3.1e-54
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MEPQHTLHCNLELCLSPPPAPPSSATAAESTTTSTSDHHHPMVNYHHGFPVTDLTELQAR 60
           MEPQHTLHCNLELCLSPPPAPPSSATAAESTTTSTSDHHHPMVNYHHGFPVTDLTELQAR
Sbjct: 10  MEPQHTLHCNLELCLSPPPAPPSSATAAESTTTSTSDHHHPMVNYHHGFPVTDLTELQAR 69

Query: 61  AIIIGATRQMEERKTTCRTRSAEEKSSSMKRSLQRFLQKRKHRIQTLTPYTT 113
           AIIIGATRQMEERKTTCRTRSAEEKSSSMKRSLQRFLQKRKHRIQTLTPYTT
Sbjct: 70  AIIIGATRQMEERKTTCRTRSAEEKSSSMKRSLQRFLQKRKHRIQTLTPYTT 121

[Close]

BLAST of MS013475 vs. ExPASy TrEMBL
Match: A0A6J1KQP6 (protein TIFY 5A-like OS=Cucurbita maxima OX=3661 GN=LOC111495613 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.0e-17
Identity = 66/118 (55.93%), Postives = 79/118 (66.95%), Query Frame = 0


Query: 4   QHTLHCNLELCLSPPPAPPS-SATAAESTTTSTSDHHHPMVNYHHGFPVTDLTELQARAI 63
           ++ L+CNLELCLSPP + PS +AT A + +TSTS H+HP        P+ DLTELQARAI
Sbjct: 2   ENILNCNLELCLSPPSSSPSTTATVAAANSTSTSCHNHPT-----RVPLLDLTELQARAI 61

Query: 64  IIGATRQM--EERKTTCRTRSAEE-------KSSSMKRSLQRFLQKRKHRIQTLTPYT 112
           I+ A  QM  E R TTC      E        S SM+RSLQRFLQKRKHRIQTL+PY+
Sbjct: 62  IVRAITQMEAERRLTTCYISLPTEPMSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYS 114

[Close]

BLAST of MS013475 vs. ExPASy TrEMBL
Match: A0A6J1EN30 (protein TIFY 5A-like OS=Cucurbita moschata OX=3662 GN=LOC111434085 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.8e-17
Identity = 65/117 (55.56%), Postives = 79/117 (67.52%), Query Frame = 0


Query: 4   QHTLHCNLELCLSPPPAPPSSATAAESTTTSTSDHHHPMVNYHHGFPVTDLTELQARAII 63
           ++ L+CNLELCLSPP + PS+AT A ST+TS  +H  P        P+ D TELQARAII
Sbjct: 2   ENILNCNLELCLSPPSSSPSTAT-ANSTSTSCHNHIDPT-----RVPIPDHTELQARAII 61

Query: 64  IGATRQM--EERKTTCRTRSAEEK-------SSSMKRSLQRFLQKRKHRIQTLTPYT 112
           + AT QM  E R TTC   S  ++       S SM+RSLQRFLQKRKHRIQTL+PY+
Sbjct: 62  VRATTQMEAERRLTTCHISSPTQRVSMKSGASPSMRRSLQRFLQKRKHRIQTLSPYS 112

[Close]

BLAST of MS013475 vs. ExPASy TrEMBL
Match: A0A1S3BA64 (protein TIFY 5A-like OS=Cucumis melo OX=3656 GN=LOC103487726 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.5e-16
Identity = 65/123 (52.85%), Postives = 81/123 (65.85%), Query Frame = 0


Query: 4   QHTLHCNLELCLSPPPAPPS---SATAAESTTTSTSDHHH--PMVNYHHGFPVTDLTELQ 63
           +H  + NLELCLSPP + PS   + T A + + S+S H+H  P+     G P  DLTE+Q
Sbjct: 2   EHFPNFNLELCLSPPSSSPSTTTTTTTAAAASNSSSQHNHITPI-----GVPTPDLTEIQ 61

Query: 64  ARAIIIGATRQM--EERKTTCRTRSAEEK--------SSSMKRSLQRFLQKRKHRIQTLT 112
           A+AII+ ATRQM  E R TTCR  S+ E+        S SM+RSLQRFLQKRK RIQTL+
Sbjct: 62  AKAIIVEATRQMEAERRWTTCRISSSAERVWMRSGEASPSMRRSLQRFLQKRKLRIQTLS 119

[Close]

BLAST of MS013475 vs. ExPASy TrEMBL
Match: A0A0A0LX13 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G435790 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 7.6e-13
Identity = 61/124 (49.19%), Postives = 77/124 (62.10%), Query Frame = 0


Query: 1   MEPQHTLHCNLELCLSPPPAPPSSATAA---ESTTTSTSDHHHPMVNYHHGFPVTDLTEL 60
           MEP      NLELCLSPP + PS+ T+     S +TS  +H  P+     G    DLTE+
Sbjct: 1   MEPLSNF--NLELCLSPPSSSPSTTTSTLPLASNSTSQPNHITPI-----GLFTPDLTEI 60

Query: 61  QARAIIIGATRQMEERKT---TCRTRSAEEK--------SSSMKRSLQRFLQKRKHRIQT 111
           QA+AII+ ATRQME  ++   TCR  S+ E+        S S++RSLQRFLQKRK RIQT
Sbjct: 61  QAKAIIVQATRQMEAERSRWRTCRISSSAERVLMTNGEASPSLRRSLQRFLQKRKLRIQT 117

[Close]

BLAST of MS013475 vs. TAIR 10
Match: AT1G30135.1 (jasmonate-zim-domain protein 8 )

HSP 1 Score: 41.6 bits (96), Expect = 4.9e-04
Identity = 39/122 (31.97%), Postives = 61/122 (50.00%), Query Frame = 0


Query: 8   HCNLELCLSPPPAPPSSATAAESTTTSTSDHHHP------MVNYHHGFPV--TDLTELQA 67
           +C+LEL L P      S+       +++S +  P      +  +++G     +D+T LQA
Sbjct: 6   NCDLELRLFPTSYDSDSSDTTSVVESTSSGNPQPNEESQRITIFYNGKMCFSSDVTHLQA 65

Query: 68  RAIIIGATRQME-----------ERKTTCRTRSAEEKSSSMKRSLQRFLQKRKHRIQTLT 111
           R+II  A+R+M+            + T+          +SMK+SLQ FLQKRK RIQ  +
Sbjct: 66  RSIISIASREMKTKSSSNGSDPPNKSTSFHHNQLPNPKASMKKSLQSFLQKRKIRIQATS 125

[Close]

BLAST of MS013475 vs. TAIR 10
Match: AT2G34600.1 (jasmonate-zim-domain protein 7 )

HSP 1 Score: 41.6 bits (96), Expect = 4.9e-04
Identity = 28/72 (38.89%), Postives = 40/72 (55.56%), Query Frame = 0


Query: 52  TDLTELQARAIIIGATRQMEERKTTCRTRSAEE-------------KSSSMKRSLQRFLQ 111
           +DLT L+A AI+  A+R +EE+  + R+    +             + +SMKRSL  FLQ
Sbjct: 73  SDLTHLEANAILSLASRDVEEKSLSLRSSDGSDPPTIPNNSTRFHYQKASMKRSLHSFLQ 132

The following BLAST results are available for this feature:

BLAST of MS013475 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140147.1	6.3e-54	100.00	protein TIFY 5A-like [Momordica charantia]	[more]
XP_023520316.1	1.1e-18	56.78	protein TIFY 5A-like [Cucurbita pepo subsp. pepo]	[more]
XP_038895134.1	1.2e-17	56.20	protein TIFY 5A-like [Benincasa hispida]	[more]
KAG7019513.1	1.2e-17	55.93	Protein TIFY 5A [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023001493.1	2.1e-17	55.93	protein TIFY 5A-like [Cucurbita maxima]	[more]

BLAST of MS013475 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS013475 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CG02	3.1e-54	100.00	protein TIFY 5A-like OS=Momordica charantia OX=3673 GN=LOC111010877 PE=4 SV=1	[more]
A0A6J1KQP6	1.0e-17	55.93	protein TIFY 5A-like OS=Cucurbita maxima OX=3661 GN=LOC111495613 PE=4 SV=1	[more]
A0A6J1EN30	1.8e-17	55.56	protein TIFY 5A-like OS=Cucurbita moschata OX=3662 GN=LOC111434085 PE=4 SV=1	[more]
A0A1S3BA64	2.5e-16	52.85	protein TIFY 5A-like OS=Cucumis melo OX=3656 GN=LOC103487726 PE=4 SV=1	[more]
A0A0A0LX13	7.6e-13	49.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G435790 PE=4 SV=1	[more]

BLAST of MS013475 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30135.1	4.9e-04	31.97	jasmonate-zim-domain protein 8	[more]
AT2G34600.1	4.9e-04	38.89	jasmonate-zim-domain protein 7	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018467	CO/COL/TOC1, conserved site	PFAM	PF09425	Jas_motif	coord: 90..110 e-value: 1.9E-9 score: 37.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..90
None	No IPR available	PANTHER	PTHR33077:SF17	PROTEIN TIFY 5B	coord: 8..110
IPR040390	TIFY/JAZ family	PANTHER	PTHR33077	PROTEIN TIFY 4A-RELATED-RELATED	coord: 8..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS013475.1	MS013475.1	mRNA