MS013467 (gene) Bitter gourd (TR) v1

Overview


Name	MS013467
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Small nuclear ribonucleoprotein family protein
Location	scaffold402: 1763736 .. 1764071 (+)
RNA-Seq Expression	MS013467
Synteny	MS013467

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACAAGAATCAGAGGGACCCAGGGTTCAGGTTGGGAGCAATGTCGAGTCTAATCCGGGCAGTTTAGATTGCATAGCAAAGGTGAGAAAGCTACTGTTTCGCCGAATGCTCATAGGCATTAAAGATGGAAGATTTTTCCTGGGAACTTTTCACTGCATTGACAAGCAAGGAAATATCATTCTACAAGATGCAGTGGAGTATCGTAGTACTCGACGTAGCTCACCTTCTCCGATGGAACAACGGTGCCTCGGCCTTATTCTTATCCCCAACTCTTGCCGTGTGTCCTGTCATGTAGATAGTACCATTGTGGAACAATTAGCGCTGCTATCAGTC

mRNA sequence

ATGGAACAAGAATCAGAGGGACCCAGGGTTCAGGTTGGGAGCAATGTCGAGTCTAATCCGGGCAGTTTAGATTGCATAGCAAAGGTGAGAAAGCTACTGTTTCGCCGAATGCTCATAGGCATTAAAGATGGAAGATTTTTCCTGGGAACTTTTCACTGCATTGACAAGCAAGGAAATATCATTCTACAAGATGCAGTGGAGTATCGTAGTACTCGACGTAGCTCACCTTCTCCGATGGAACAACGGTGCCTCGGCCTTATTCTTATCCCCAACTCTTGCCGTGTGTCCTGTCATGTAGATAGTACCATTGTGGAACAATTAGCGCTGCTATCAGTC

Coding sequence (CDS)

ATGGAACAAGAATCAGAGGGACCCAGGGTTCAGGTTGGGAGCAATGTCGAGTCTAATCCGGGCAGTTTAGATTGCATAGCAAAGGTGAGAAAGCTACTGTTTCGCCGAATGCTCATAGGCATTAAAGATGGAAGATTTTTCCTGGGAACTTTTCACTGCATTGACAAGCAAGGAAATATCATTCTACAAGATGCAGTGGAGTATCGTAGTACTCGACGTAGCTCACCTTCTCCGATGGAACAACGGTGCCTCGGCCTTATTCTTATCCCCAACTCTTGCCGTGTGTCCTGTCATGTAGATAGTACCATTGTGGAACAATTAGCGCTGCTATCAGTC

Protein sequence

MEQESEGPRVQVGSNVESNPGSLDCIAKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIVEQLALLSV

Homology

[Close]

BLAST of MS013467 vs. NCBI nr
Match: XP_022140017.1 (uncharacterized protein LOC111010777 [Momordica charantia])

HSP 1 Score: 227.3 bits (578), Expect = 6.8e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MEQESEGPRVQVGSNVESNPGSLDCIAKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNI 60
           MEQESEGPRVQVGSNVESNPGSLDCIAKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNI
Sbjct: 1   MEQESEGPRVQVGSNVESNPGSLDCIAKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIVEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIVEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIVEQLALLSV 112

[Close]

BLAST of MS013467 vs. NCBI nr
Match: XP_023520042.1 (uncharacterized protein LOC111783348 [Cucurbita pepo subsp. pepo] >KAG7019507.1 Small nuclear ribonucleoprotein-associated protein B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 202.2 bits (513), Expect = 2.3e-48
Identity = 101/112 (90.18%), Postives = 105/112 (93.75%), Query Frame = 0


Query: 1   MEQESEGPRVQVGSNVESNPGSLDCIAKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNI 60
           MEQES G  VQVGSNVESNP SLD + KVRKLLFRRMLIGIKDGRFFLG+F+C+DKQGNI
Sbjct: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIVEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTI EQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of MS013467 vs. NCBI nr
Match: XP_022927243.1 (uncharacterized protein LOC111434149 [Cucurbita moschata])

HSP 1 Score: 200.3 bits (508), Expect = 8.9e-48
Identity = 100/112 (89.29%), Postives = 104/112 (92.86%), Query Frame = 0


Query: 1   MEQESEGPRVQVGSNVESNPGSLDCIAKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNI 60
           MEQES G  VQVG NVESNP SLD + KVRKLLFRRMLIGIKDGRFFLG+F+C+DKQGNI
Sbjct: 1   MEQESGGSMVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIVEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTI EQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of MS013467 vs. NCBI nr
Match: XP_011649337.1 (uncharacterized protein LOC101206200 [Cucumis sativus] >KGN63907.1 hypothetical protein Csa_014187 [Cucumis sativus])

HSP 1 Score: 200.3 bits (508), Expect = 8.9e-48
Identity = 102/112 (91.07%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 1   MEQESEGPRVQVGSNVESNPGSLDCIAKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNI 60
           MEQES G  VQ GSNVESNP SLD I KVRKLLFRRMLIGIKDGRFFLG F+CIDKQGNI
Sbjct: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIVEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTI EQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of MS013467 vs. NCBI nr
Match: XP_008444477.1 (PREDICTED: uncharacterized protein LOC103487784 [Cucumis melo] >KAA0053997.1 Small nuclear ribonucleoprotein family protein isoform 2 [Cucumis melo var. makuwa] >TYK20682.1 Small nuclear ribonucleoprotein family protein isoform 2 [Cucumis melo var. makuwa])

HSP 1 Score: 199.9 bits (507), Expect = 1.2e-47
Identity = 101/112 (90.18%), Postives = 102/112 (91.07%), Query Frame = 0


Query: 1   MEQESEGPRVQVGSNVESNPGSLDCIAKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNI 60
           MEQES G  VQ GSN ESN  SLDCI KVRKLLFRRMLIGIKDGRFFLG F+CIDKQGNI
Sbjct: 1   MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIVEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTI EQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of MS013467 vs. ExPASy Swiss-Prot
Match: A4IGZ4 (N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Xenopus tropicalis OX=8364 GN=naa38 PE=3 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 3.0e-06
Identity = 35/96 (36.46%), Postives = 48/96 (50.00%), Query Frame = 0


Query: 13  GSNVESNPGSLDCIA--------KVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQD 72
           G + +S+PG+ D  A        K+  LL R M I + DGR  +G F C D+  N+IL  
Sbjct: 9   GCSRQSSPGAGDSDAEAGDTARHKLESLLNRNMRIEMTDGRSLIGCFLCTDRDCNVILGS 68

Query: 73  AVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD 101
           A E+     S P   E R LGL ++P    VS  V+
Sbjct: 69  AQEFLRPSDSFP-VREPRVLGLAMVPGHHIVSIQVE 103

[Close]

BLAST of MS013467 vs. ExPASy Swiss-Prot
Match: Q55A45 (Small nuclear ribonucleoprotein-associated protein B OS=Dictyostelium discoideum OX=44689 GN=snrpb PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 8.7e-06
Identity = 29/84 (34.52%), Postives = 46/84 (54.76%), Query Frame = 0


Query: 27  AKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRSSPSPMEQ-RCLG 86
           +K+ + +  RM + I+DGR  +G F   DK  N+++ DA E+R  R+      E+ R LG
Sbjct: 8   SKMLQYINYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQKGKEDREEKRTLG 67

Query: 87  LILIPNSCRVSCHVDSTIVEQLAL 110
           +ILI     VS  V++   E+  L
Sbjct: 68  MILIRGETVVSMSVEAPPPEEAKL 91

[Close]

BLAST of MS013467 vs. ExPASy Swiss-Prot
Match: Q6GQ67 (N-alpha-acetyltransferase 38-A, NatC auxiliary subunit OS=Xenopus laevis OX=8355 GN=naa38-a PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.5e-05
Identity = 34/96 (35.42%), Postives = 47/96 (48.96%), Query Frame = 0


Query: 13  GSNVESNPGSLDCIA--------KVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNIILQD 72
           G + +S+P + D  A        K+  LL R M I + DGR  +G F C D+  N+IL  
Sbjct: 9   GCSRQSSPSAGDSDAEPGDTARHKLESLLNRNMRIEMTDGRSLIGCFLCTDRDCNVILGS 68

Query: 73  AVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD 101
           A E+     S P   E R LGL ++P    VS  V+
Sbjct: 69  AQEFLRPSDSFP-VREPRVLGLAMVPGHHIVSIQVE 103

[Close]

BLAST of MS013467 vs. ExPASy Swiss-Prot
Match: Q17QN3 (Small nuclear ribonucleoprotein-associated protein N OS=Bos taurus OX=9913 GN=SNRPN PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.3e-05
Identity = 27/68 (39.71%), Postives = 37/68 (54.41%), Query Frame = 0


Query: 36  RMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNS 95
           RM   ++DGR F+GTF   DK  N+IL D  E+R  +      P   E+R LGL+L+   
Sbjct: 16  RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGE 75

Query: 96  CRVSCHVD 101
             VS  V+
Sbjct: 76  NLVSMTVE 83

[Close]

BLAST of MS013467 vs. ExPASy Swiss-Prot
Match: P63162 (Small nuclear ribonucleoprotein-associated protein N OS=Homo sapiens OX=9606 GN=SNRPN PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.3e-05
Identity = 27/68 (39.71%), Postives = 37/68 (54.41%), Query Frame = 0


Query: 36  RMLIGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILIPNS 95
           RM   ++DGR F+GTF   DK  N+IL D  E+R  +      P   E+R LGL+L+   
Sbjct: 16  RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGE 75

Query: 96  CRVSCHVD 101
             VS  V+
Sbjct: 76  NLVSMTVE 83

[Close]

BLAST of MS013467 vs. ExPASy TrEMBL
Match: A0A6J1CFL8 (uncharacterized protein LOC111010777 OS=Momordica charantia OX=3673 GN=LOC111010777 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.3e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MEQESEGPRVQVGSNVESNPGSLDCIAKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNI 60
           MEQESEGPRVQVGSNVESNPGSLDCIAKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNI
Sbjct: 1   MEQESEGPRVQVGSNVESNPGSLDCIAKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIVEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIVEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIVEQLALLSV 112

[Close]

BLAST of MS013467 vs. ExPASy TrEMBL
Match: A0A0A0LSZ5 (Sm domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G025880 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.3e-48
Identity = 102/112 (91.07%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 1   MEQESEGPRVQVGSNVESNPGSLDCIAKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNI 60
           MEQES G  VQ GSNVESNP SLD I KVRKLLFRRMLIGIKDGRFFLG F+CIDKQGNI
Sbjct: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIVEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTI EQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of MS013467 vs. ExPASy TrEMBL
Match: A0A6J1EKG3 (uncharacterized protein LOC111434149 OS=Cucurbita moschata OX=3662 GN=LOC111434149 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.3e-48
Identity = 100/112 (89.29%), Postives = 104/112 (92.86%), Query Frame = 0


Query: 1   MEQESEGPRVQVGSNVESNPGSLDCIAKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNI 60
           MEQES G  VQVG NVESNP SLD + KVRKLLFRRMLIGIKDGRFFLG+F+C+DKQGNI
Sbjct: 1   MEQESGGSMVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIVEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTI EQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of MS013467 vs. ExPASy TrEMBL
Match: A0A5D3DAS2 (Small nuclear ribonucleoprotein family protein isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00700 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 5.6e-48
Identity = 101/112 (90.18%), Postives = 102/112 (91.07%), Query Frame = 0


Query: 1   MEQESEGPRVQVGSNVESNPGSLDCIAKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNI 60
           MEQES G  VQ GSN ESN  SLDCI KVRKLLFRRMLIGIKDGRFFLG F+CIDKQGNI
Sbjct: 1   MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIVEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTI EQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of MS013467 vs. ExPASy TrEMBL
Match: A0A1S3BAH4 (uncharacterized protein LOC103487784 OS=Cucumis melo OX=3656 GN=LOC103487784 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 5.6e-48
Identity = 101/112 (90.18%), Postives = 102/112 (91.07%), Query Frame = 0


Query: 1   MEQESEGPRVQVGSNVESNPGSLDCIAKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNI 60
           MEQES G  VQ GSN ESN  SLDCI KVRKLLFRRMLIGIKDGRFFLG F+CIDKQGNI
Sbjct: 1   MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIVEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTI EQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of MS013467 vs. TAIR 10
Match: AT4G18372.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 154.1 bits (388), Expect = 6.8e-38
Identity = 76/112 (67.86%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 1   MEQESEGPRVQVGSNVESNPGSLDCIAKVRKLLFRRMLIGIKDGRFFLGTFHCIDKQGNI 60
           MEQ +E     V S  E +    D I+++RKLLFR+ML+GIKDGRFFLG FHCIDKQGNI
Sbjct: 1   MEQAAERSSTIVASTSEGS--DFDPISRLRKLLFRQMLVGIKDGRFFLGNFHCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIVEQLALLSV 113
           ILQD VEYRS RRSSPSP EQRCLG+ILIP+SCR SCHVD +I EQL+L+ +
Sbjct: 61  ILQDTVEYRSIRRSSPSPTEQRCLGMILIPSSCRTSCHVDCSIDEQLSLIQL 110

The following BLAST results are available for this feature:

BLAST of MS013467 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140017.1	6.8e-56	100.00	uncharacterized protein LOC111010777 [Momordica charantia]	[more]
XP_023520042.1	2.3e-48	90.18	uncharacterized protein LOC111783348 [Cucurbita pepo subsp. pepo] >KAG7019507.1 ...	[more]
XP_022927243.1	8.9e-48	89.29	uncharacterized protein LOC111434149 [Cucurbita moschata]	[more]
XP_011649337.1	8.9e-48	91.07	uncharacterized protein LOC101206200 [Cucumis sativus] >KGN63907.1 hypothetical ...	[more]
XP_008444477.1	1.2e-47	90.18	PREDICTED: uncharacterized protein LOC103487784 [Cucumis melo] >KAA0053997.1 Sma...	[more]

BLAST of MS013467 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4IGZ4	3.0e-06	36.46	N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Xenopus tropicalis OX=83...	[more]
Q55A45	8.7e-06	34.52	Small nuclear ribonucleoprotein-associated protein B OS=Dictyostelium discoideum...	[more]
Q6GQ67	1.5e-05	35.42	N-alpha-acetyltransferase 38-A, NatC auxiliary subunit OS=Xenopus laevis OX=8355...	[more]
Q17QN3	3.3e-05	39.71	Small nuclear ribonucleoprotein-associated protein N OS=Bos taurus OX=9913 GN=SN...	[more]
P63162	3.3e-05	39.71	Small nuclear ribonucleoprotein-associated protein N OS=Homo sapiens OX=9606 GN=...	[more]

BLAST of MS013467 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CFL8	3.3e-56	100.00	uncharacterized protein LOC111010777 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A0A0LSZ5	4.3e-48	91.07	Sm domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G025880 PE=4 SV=...	[more]
A0A6J1EKG3	4.3e-48	89.29	uncharacterized protein LOC111434149 OS=Cucurbita moschata OX=3662 GN=LOC1114341...	[more]
A0A5D3DAS2	5.6e-48	90.18	Small nuclear ribonucleoprotein family protein isoform 2 OS=Cucumis melo var. ma...	[more]
A0A1S3BAH4	5.6e-48	90.18	uncharacterized protein LOC103487784 OS=Cucumis melo OX=3656 GN=LOC103487784 PE=...	[more]

BLAST of MS013467 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G18372.1	6.8e-38	67.86	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 27..99 e-value: 0.0047 score: 24.5
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 29..89 e-value: 4.0E-9 score: 36.0
None	No IPR available	GENE3D	2.30.30.100		coord: 26..104 e-value: 3.6E-18 score: 67.1
None	No IPR available	PANTHER	PTHR10701	SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N	coord: 15..111
IPR034110	LSM domain containing 1	PANTHER	PTHR10701:SF5	FI06540P	coord: 15..111
IPR034110	LSM domain containing 1	CDD	cd06168	LSMD1	coord: 26..100 e-value: 1.54951E-27 score: 94.1609
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 26..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS013467.1	MS013467.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0031417	NatC complex