MS013452 (gene) Bitter gourd (TR) v1

Overview


Name	MS013452
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	transcription termination factor MTEF1, chloroplastic
Location	scaffold402: 1654787 .. 1655707 (-)
RNA-Seq Expression	MS013452
Synteny	MS013452

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTGCTGCAACTGCAACTGCTTTTCATTCTTCTTTCTGCTTCTCTTCTCACAAACTTTCTTCCTCTCCCTCAAATTCCCATTCCAACTCCCACCAACCAAACACTTTCTTAGCAGCCAAACCCAAAACCCTCTTCCATAAGCATCCCCTCTACACCCCTCTTCACTCCACCCTCTCTTCCCAAGTCAAAGAGAAAATCCTGTGCCTTGAAATCATGGGTGTCGATGCTGGCAAGGCCCTCTCTCTCAATCCCTCTCTCCACTCTGTAACTCTTGAATCCATCCACTCTGTCATCTCCTTTCTCCAATCTAAAGGCATTCACCAGAAGGACTTCGCCAAAATCTTTGGAATGTGTCCCAAAATCCTCACCTCAGATGTCAAAACTGACCTCATCCCAGTTTTCAACTTCCTCTCTGAAGACCTTAAAATCCCAGATCAGAGCTTCAGAAGGACCATCAACAAGTGCCCAAGACTGCTCGCTTCAAGTGCCAAAGACCAGCTGAAGCCAGCTCTGTTTTACCTTCAGAGACTTGGGTTGAGGGATTTGGAGGCCTTGGCTTACCATGACTCTGTTCTGCTGGTTTCTAGTGTGGAGAGGACCTTGATTCCCAAACTCAAGTATTTGGAGAGTTTGGGATTCTCGAGGAGTGAAACTGTGGGGATGGTCTTGAGGTGTCCAGCACTGCTCACTTTCAGCATTGAAAATAACTTCAAGCCAAAGTTTGAGTACTTTTCTGGGGAGATGCATGGAAAATTGGAGGAGCTCAAGGACTTCCCTCAGTATTTTGCCTTCAGCTTGGAAAAGAGGATAAAGCCAAGGTATTTGGAGACTGTGCAGAGTGGAAAGAAAGTGCCTTTGTCACTTATGCTCAAGACCACAGATGATGAGTTTAGAGAATTGTTAAGAGAAGGCCAAGGG

mRNA sequence

ATGCCTGCTGCAACTGCAACTGCTTTTCATTCTTCTTTCTGCTTCTCTTCTCACAAACTTTCTTCCTCTCCCTCAAATTCCCATTCCAACTCCCACCAACCAAACACTTTCTTAGCAGCCAAACCCAAAACCCTCTTCCATAAGCATCCCCTCTACACCCCTCTTCACTCCACCCTCTCTTCCCAAGTCAAAGAGAAAATCCTGTGCCTTGAAATCATGGGTGTCGATGCTGGCAAGGCCCTCTCTCTCAATCCCTCTCTCCACTCTGTAACTCTTGAATCCATCCACTCTGTCATCTCCTTTCTCCAATCTAAAGGCATTCACCAGAAGGACTTCGCCAAAATCTTTGGAATGTGTCCCAAAATCCTCACCTCAGATGTCAAAACTGACCTCATCCCAGTTTTCAACTTCCTCTCTGAAGACCTTAAAATCCCAGATCAGAGCTTCAGAAGGACCATCAACAAGTGCCCAAGACTGCTCGCTTCAAGTGCCAAAGACCAGCTGAAGCCAGCTCTGTTTTACCTTCAGAGACTTGGGTTGAGGGATTTGGAGGCCTTGGCTTACCATGACTCTGTTCTGCTGGTTTCTAGTGTGGAGAGGACCTTGATTCCCAAACTCAAGTATTTGGAGAGTTTGGGATTCTCGAGGAGTGAAACTGTGGGGATGGTCTTGAGGTGTCCAGCACTGCTCACTTTCAGCATTGAAAATAACTTCAAGCCAAAGTTTGAGTACTTTTCTGGGGAGATGCATGGAAAATTGGAGGAGCTCAAGGACTTCCCTCAGTATTTTGCCTTCAGCTTGGAAAAGAGGATAAAGCCAAGGTATTTGGAGACTGTGCAGAGTGGAAAGAAAGTGCCTTTGTCACTTATGCTCAAGACCACAGATGATGAGTTTAGAGAATTGTTAAGAGAAGGCCAAGGG

Coding sequence (CDS)

ATGCCTGCTGCAACTGCAACTGCTTTTCATTCTTCTTTCTGCTTCTCTTCTCACAAACTTTCTTCCTCTCCCTCAAATTCCCATTCCAACTCCCACCAACCAAACACTTTCTTAGCAGCCAAACCCAAAACCCTCTTCCATAAGCATCCCCTCTACACCCCTCTTCACTCCACCCTCTCTTCCCAAGTCAAAGAGAAAATCCTGTGCCTTGAAATCATGGGTGTCGATGCTGGCAAGGCCCTCTCTCTCAATCCCTCTCTCCACTCTGTAACTCTTGAATCCATCCACTCTGTCATCTCCTTTCTCCAATCTAAAGGCATTCACCAGAAGGACTTCGCCAAAATCTTTGGAATGTGTCCCAAAATCCTCACCTCAGATGTCAAAACTGACCTCATCCCAGTTTTCAACTTCCTCTCTGAAGACCTTAAAATCCCAGATCAGAGCTTCAGAAGGACCATCAACAAGTGCCCAAGACTGCTCGCTTCAAGTGCCAAAGACCAGCTGAAGCCAGCTCTGTTTTACCTTCAGAGACTTGGGTTGAGGGATTTGGAGGCCTTGGCTTACCATGACTCTGTTCTGCTGGTTTCTAGTGTGGAGAGGACCTTGATTCCCAAACTCAAGTATTTGGAGAGTTTGGGATTCTCGAGGAGTGAAACTGTGGGGATGGTCTTGAGGTGTCCAGCACTGCTCACTTTCAGCATTGAAAATAACTTCAAGCCAAAGTTTGAGTACTTTTCTGGGGAGATGCATGGAAAATTGGAGGAGCTCAAGGACTTCCCTCAGTATTTTGCCTTCAGCTTGGAAAAGAGGATAAAGCCAAGGTATTTGGAGACTGTGCAGAGTGGAAAGAAAGTGCCTTTGTCACTTATGCTCAAGACCACAGATGATGAGTTTAGAGAATTGTTAAGAGAAGGCCAAGGG

Protein sequence

MPAATATAFHSSFCFSSHKLSSSPSNSHSNSHQPNTFLAAKPKTLFHKHPLYTPLHSTLSSQVKEKILCLEIMGVDAGKALSLNPSLHSVTLESIHSVISFLQSKGIHQKDFAKIFGMCPKILTSDVKTDLIPVFNFLSEDLKIPDQSFRRTINKCPRLLASSAKDQLKPALFYLQRLGLRDLEALAYHDSVLLVSSVERTLIPKLKYLESLGFSRSETVGMVLRCPALLTFSIENNFKPKFEYFSGEMHGKLEELKDFPQYFAFSLEKRIKPRYLETVQSGKKVPLSLMLKTTDDEFRELLREGQG

Homology

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BLAST of MS013452 vs. NCBI nr
Match: XP_022139889.1 (transcription termination factor MTEF1, chloroplastic [Momordica charantia])

HSP 1 Score: 599.4 bits (1544), Expect = 1.8e-167
Identity = 306/307 (99.67%), Postives = 306/307 (99.67%), Query Frame = 0


Query: 1   MPAATATAFHSSFCFSSHKLSSSPSNSHSNSHQPNTFLAAKPKTLFHKHPLYTPLHSTLS 60
           MPAATATAFHSSFCFSSHKLSSSPSNSHSNSHQPNT LAAKPKTLFHKHPLYTPLHSTLS
Sbjct: 1   MPAATATAFHSSFCFSSHKLSSSPSNSHSNSHQPNTLLAAKPKTLFHKHPLYTPLHSTLS 60

Query: 61  SQVKEKILCLEIMGVDAGKALSLNPSLHSVTLESIHSVISFLQSKGIHQKDFAKIFGMCP 120
           SQVKEKILCLEIMGVDAGKALSLNPSLHSVTLESIHSVISFLQSKGIHQKDFAKIFGMCP
Sbjct: 61  SQVKEKILCLEIMGVDAGKALSLNPSLHSVTLESIHSVISFLQSKGIHQKDFAKIFGMCP 120

Query: 121 KILTSDVKTDLIPVFNFLSEDLKIPDQSFRRTINKCPRLLASSAKDQLKPALFYLQRLGL 180
           KILTSDVKTDLIPVFNFLSEDLKIPDQSFRRTINKCPRLLASSAKDQLKPALFYLQRLGL
Sbjct: 121 KILTSDVKTDLIPVFNFLSEDLKIPDQSFRRTINKCPRLLASSAKDQLKPALFYLQRLGL 180

Query: 181 RDLEALAYHDSVLLVSSVERTLIPKLKYLESLGFSRSETVGMVLRCPALLTFSIENNFKP 240
           RDLEALAYHDSVLLVSSVERTLIPKLKYLESLGFSRSETVGMVLRCPALLTFSIENNFKP
Sbjct: 181 RDLEALAYHDSVLLVSSVERTLIPKLKYLESLGFSRSETVGMVLRCPALLTFSIENNFKP 240

Query: 241 KFEYFSGEMHGKLEELKDFPQYFAFSLEKRIKPRYLETVQSGKKVPLSLMLKTTDDEFRE 300
           KFEYFSGEMHGKLEELKDFPQYFAFSLEKRIKPRYLETVQSGKKVPLSLMLKTTDDEFRE
Sbjct: 241 KFEYFSGEMHGKLEELKDFPQYFAFSLEKRIKPRYLETVQSGKKVPLSLMLKTTDDEFRE 300

Query: 301 LLREGQG 308
           LLREGQG
Sbjct: 301 LLREGQG 307

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BLAST of MS013452 vs. NCBI nr
Match: XP_038895185.1 (transcription termination factor MTEF1, chloroplastic [Benincasa hispida])

HSP 1 Score: 547.0 bits (1408), Expect = 1.1e-151
Identity = 280/307 (91.21%), Postives = 292/307 (95.11%), Query Frame = 0


Query: 1   MPAATATAFHSSFCFSSHKLSSSPSNSHSNSHQPNTFLAAKPKTLFHKHPLYTPLHSTLS 60
           MP++TATAFHSSFCFSSHKLSS    S S+SHQPNTFL+AKPKTLFHKHPLYTPLHSTLS
Sbjct: 1   MPSSTATAFHSSFCFSSHKLSS----SSSSSHQPNTFLSAKPKTLFHKHPLYTPLHSTLS 60

Query: 61  SQVKEKILCLEIMGVDAGKALSLNPSLHSVTLESIHSVISFLQSKGIHQKDFAKIFGMCP 120
           SQ+KEKILCLEIMGVDAGKALS NPSLHSVTLESIHSVISFLQSKGIHQKDFAKIFGMCP
Sbjct: 61  SQIKEKILCLEIMGVDAGKALSQNPSLHSVTLESIHSVISFLQSKGIHQKDFAKIFGMCP 120

Query: 121 KILTSDVKTDLIPVFNFLSEDLKIPDQSFRRTINKCPRLLASSAKDQLKPALFYLQRLGL 180
           KILTSDVKTDLIPVFNFLSEDLKIPDQ+FRR INKCPRLLASS KDQLKPALFYLQRLGL
Sbjct: 121 KILTSDVKTDLIPVFNFLSEDLKIPDQNFRRAINKCPRLLASSPKDQLKPALFYLQRLGL 180

Query: 181 RDLEALAYHDSVLLVSSVERTLIPKLKYLESLGFSRSETVGMVLRCPALLTFSIENNFKP 240
           +DLEALAY DSVLLVSSVE+TLIPKLKYLESLG SRSETVGMVLRCPALLTFSIENNFKP
Sbjct: 181 KDLEALAYRDSVLLVSSVEKTLIPKLKYLESLGLSRSETVGMVLRCPALLTFSIENNFKP 240

Query: 241 KFEYFSGEMHGKLEELKDFPQYFAFSLEKRIKPRYLETVQSGKKVPLSLMLKTTDDEFRE 300
           KFEYFS EMH KLEELKDFPQYFAFSLEKRIKPRY+ETV+SGKKVPL LMLKTTDDEFR+
Sbjct: 241 KFEYFSVEMHRKLEELKDFPQYFAFSLEKRIKPRYVETVRSGKKVPLPLMLKTTDDEFRQ 300

Query: 301 LLREGQG 308
           LL +G G
Sbjct: 301 LLTQGDG 303

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BLAST of MS013452 vs. NCBI nr
Match: XP_008444692.1 (PREDICTED: transcription termination factor MTEF1, chloroplastic [Cucumis melo] >KAA0054024.1 transcription termination factor MTEF1 [Cucumis melo var. makuwa] >TYK20710.1 transcription termination factor MTEF1 [Cucumis melo var. makuwa])

HSP 1 Score: 533.1 bits (1372), Expect = 1.6e-147
Identity = 276/308 (89.61%), Postives = 290/308 (94.16%), Query Frame = 0


Query: 1   MPAATATAFHSSFCFSSH-KLSSSPSNSHSNSHQPNTFLAAKPKTLFHKHPLYTPLHSTL 60
           M +++ATAFHSSFCFSSH KLSSSP    SNSHQPNT L+ KPKTL HKHPLYTPLHSTL
Sbjct: 1   MSSSSATAFHSSFCFSSHNKLSSSP----SNSHQPNTSLSPKPKTLLHKHPLYTPLHSTL 60

Query: 61  SSQVKEKILCLEIMGVDAGKALSLNPSLHSVTLESIHSVISFLQSKGIHQKDFAKIFGMC 120
           SSQ KEKILCLEIMGVD+GKALS NPSLH VTLESIHSVISFLQSKGIHQKDFAKIFGMC
Sbjct: 61  SSQTKEKILCLEIMGVDSGKALSQNPSLHCVTLESIHSVISFLQSKGIHQKDFAKIFGMC 120

Query: 121 PKILTSDVKTDLIPVFNFLSEDLKIPDQSFRRTINKCPRLLASSAKDQLKPALFYLQRLG 180
           PKILTSDVKTDLIPVFNFLSEDLKIPDQ+FR+ INKCPRLLASSA+DQLKPALFYLQRLG
Sbjct: 121 PKILTSDVKTDLIPVFNFLSEDLKIPDQNFRKAINKCPRLLASSAEDQLKPALFYLQRLG 180

Query: 181 LRDLEALAYHDSVLLVSSVERTLIPKLKYLESLGFSRSETVGMVLRCPALLTFSIENNFK 240
           L+DLEALAYHDSVLLVSSVE+TLIPKLKYLESLGF+RSETVGMVLRCPALLTFSIENNFK
Sbjct: 181 LKDLEALAYHDSVLLVSSVEKTLIPKLKYLESLGFTRSETVGMVLRCPALLTFSIENNFK 240

Query: 241 PKFEYFSGEMHGKLEELKDFPQYFAFSLEKRIKPRYLETVQSGKKVPLSLMLKTTDDEFR 300
           PKFEYFS EMH KLEELKDFPQYFAFSLEKRIKPR++ETV+SGKKVPLSLMLKTTD EFR
Sbjct: 241 PKFEYFSVEMHRKLEELKDFPQYFAFSLEKRIKPRHVETVESGKKVPLSLMLKTTDVEFR 300

Query: 301 ELLREGQG 308
           ELL EG G
Sbjct: 301 ELLAEGGG 304

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BLAST of MS013452 vs. NCBI nr
Match: XP_004154376.1 (transcription termination factor MTEF1, chloroplastic [Cucumis sativus] >KGN65875.1 hypothetical protein Csa_023269 [Cucumis sativus])

HSP 1 Score: 533.1 bits (1372), Expect = 1.6e-147
Identity = 275/308 (89.29%), Postives = 290/308 (94.16%), Query Frame = 0


Query: 1   MPAATATAFHSSFCFSSH-KLSSSPSNSHSNSHQPNTFLAAKPKTLFHKHPLYTPLHSTL 60
           M +++ATAFHSSFCFSSH KLSSSP    SNSHQPNT L+ KPKTL HKHPLYTPLHST+
Sbjct: 1   MSSSSATAFHSSFCFSSHNKLSSSP----SNSHQPNTSLSPKPKTLLHKHPLYTPLHSTV 60

Query: 61  SSQVKEKILCLEIMGVDAGKALSLNPSLHSVTLESIHSVISFLQSKGIHQKDFAKIFGMC 120
           SSQ KEKILCLEIMGVD+GKALS NPSLHSVTLESIHSVISFLQSKGIHQKDFAKIFGMC
Sbjct: 61  SSQTKEKILCLEIMGVDSGKALSQNPSLHSVTLESIHSVISFLQSKGIHQKDFAKIFGMC 120

Query: 121 PKILTSDVKTDLIPVFNFLSEDLKIPDQSFRRTINKCPRLLASSAKDQLKPALFYLQRLG 180
           PKILTSDVKTDL+PVFNFLSEDLKIPDQ+FR+ INKCPRLLASSA+DQLKPALFYLQRLG
Sbjct: 121 PKILTSDVKTDLVPVFNFLSEDLKIPDQNFRKAINKCPRLLASSAEDQLKPALFYLQRLG 180

Query: 181 LRDLEALAYHDSVLLVSSVERTLIPKLKYLESLGFSRSETVGMVLRCPALLTFSIENNFK 240
           L+DLEALAYHDSVLLVSSVE+TLIPKLKYLESLGF+RSE VGMVLRCPALLTFSIENNFK
Sbjct: 181 LKDLEALAYHDSVLLVSSVEKTLIPKLKYLESLGFTRSEIVGMVLRCPALLTFSIENNFK 240

Query: 241 PKFEYFSGEMHGKLEELKDFPQYFAFSLEKRIKPRYLETVQSGKKVPLSLMLKTTDDEFR 300
           PKFEYFS EMH KLEELKDFPQYFAFSLEKRIKPRY+ETV+SGKKVPLSLMLKTTD EFR
Sbjct: 241 PKFEYFSVEMHKKLEELKDFPQYFAFSLEKRIKPRYVETVESGKKVPLSLMLKTTDVEFR 300

Query: 301 ELLREGQG 308
           ELL EG G
Sbjct: 301 ELLAEGGG 304

[Close]

BLAST of MS013452 vs. NCBI nr
Match: KAG6583877.1 (Transcription termination factor MTEF1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 520.4 bits (1339), Expect = 1.1e-143
Identity = 270/307 (87.95%), Postives = 282/307 (91.86%), Query Frame = 0


Query: 1   MPAATATAFHSSFCFSSHKLSSSPSNSHSNSHQPNTFLAAKPKTLFHKHPLYTPLHSTLS 60
           MPAA   AF SSFCFSSH+LS+SP    SNS QPNTFLAAKPK+LFHKHPLYTPLHSTLS
Sbjct: 1   MPAA---AFPSSFCFSSHELSASP----SNSQQPNTFLAAKPKSLFHKHPLYTPLHSTLS 60

Query: 61  SQVKEKILCLEIMGVDAGKALSLNPSLHSVTLESIHSVISFLQSKGIHQKDFAKIFGMCP 120
           SQ+KEKILCLEIMGVDAGKALS NPSLHSVTLESIHSVISFLQSKGIHQKDFAKIFGMCP
Sbjct: 61  SQIKEKILCLEIMGVDAGKALSQNPSLHSVTLESIHSVISFLQSKGIHQKDFAKIFGMCP 120

Query: 121 KILTSDVKTDLIPVFNFLSEDLKIPDQSFRRTINKCPRLLASSAKDQLKPALFYLQRLGL 180
           KILTSDVK DLIPVF+FLSEDLKIPDQ+FRR INKCPRLLASSAKDQLKPALFYLQRLG 
Sbjct: 121 KILTSDVKADLIPVFSFLSEDLKIPDQNFRRVINKCPRLLASSAKDQLKPALFYLQRLGF 180

Query: 181 RDLEALAYHDSVLLVSSVERTLIPKLKYLESLGFSRSETVGMVLRCPALLTFSIENNFKP 240
           +DLEALAY DS LLVSSVE+TLIPKLKYL+SLGFSRSETVGMVLRCPALLTFSIENN KP
Sbjct: 181 KDLEALAYQDSALLVSSVEKTLIPKLKYLQSLGFSRSETVGMVLRCPALLTFSIENNLKP 240

Query: 241 KFEYFSGEMHGKLEELKDFPQYFAFSLEKRIKPRYLETVQSGKKVPLSLMLKTTDDEFRE 300
           KFEYFSGEM  K+EELKDFPQYF FSLEKRIKPRY+ETVQSGK V L LMLK TDDEF+E
Sbjct: 241 KFEYFSGEMQRKVEELKDFPQYFGFSLEKRIKPRYVETVQSGKNVALPLMLKATDDEFKE 300

Query: 301 LLREGQG 308
           LLRE  G
Sbjct: 301 LLREESG 300

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BLAST of MS013452 vs. ExPASy Swiss-Prot
Match: Q84X53 (Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF1 PE=2 SV=2)

HSP 1 Score: 221.9 bits (564), Expect = 1.0e-56
Identity = 115/242 (47.52%), Postives = 166/242 (68.60%), Query Frame = 0


Query: 64  KEKILCLEIMGVDAGKALSLNPSLHSVTLESIHSVISFLQSKGIHQKDFAKIFGMCPKIL 123
           +EK++ L+ + VD  KAL +NPSL S  + S+ SV + L S G+ +    +I  M P +L
Sbjct: 34  REKLIYLQDLNVDPHKALRVNPSLRSAPISSVVSVETLLSSTGLSRPAVGRILDMFPDLL 93

Query: 124 TSDVKTDLIPVFNFLSEDLKIPDQSFRRTINKCPRLLASSAKDQLKPALFYLQRLGLRDL 183
           TSD +++++PV  FLS ++ I +Q   ++I++CPRLL SS   QL+PAL +L+ LG    
Sbjct: 94  TSDPESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGFVGR 153

Query: 184 EALAYHDSVLLVSSVERTLIPKLKYL-ESLGFSRSETVGMVLRCPALLTFSIENNFKPKF 243
           + +   ++VLLVS+VERTLIPK++YL E LGF+R E   MV+R PALLT+S++NN  PK 
Sbjct: 154 DTITSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPKV 213

Query: 244 EYFSGEMHGKLEELKDFPQYFAFSLEKRIKPRYLETVQSGKKVPLSLMLKTTDDEFRELL 303
           E+F  EM G ++ELK FPQYF+FSLE++IKPR+    + G  +PLS MLK +D +F   L
Sbjct: 214 EFFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVSDGQFNHWL 273

Query: 304 RE 305
            E
Sbjct: 274 LE 275

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BLAST of MS013452 vs. ExPASy Swiss-Prot
Match: F4JVI3 (Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF5 PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 8.7e-24
Identity = 75/243 (30.86%), Postives = 130/243 (53.50%), Query Frame = 0


Query: 63  VKEKILCLEIMGVDAGKALSLNPSLHSVTL-ESIHSVISFLQSKGIHQKDFAKIFGMCPK 122
           V E +L L I   D    L   P +  ++L +++   ++FL++ GI +  +AKI    P 
Sbjct: 235 VVEFLLDLGIPKSDIPTILCKRPQICGISLTDNLKPTMAFLETLGIDKNQWAKIISRFPA 294

Query: 123 ILTSDVKTDLIPVFNFLSEDLKIPDQSFRRTINKCPRLLASSAKDQLKPALFYLQRLGLR 182
           ILT   +  L     FLS+   + ++   R + +CP +++ S +D+L+P + Y + L + 
Sbjct: 295 ILTYS-RQKLTSTVEFLSQ-TGLTEEQIGRILTRCPNIMSYSVEDKLRPTMEYFRSLNV- 354

Query: 183 DLEALAYHDSVLLVSSVERTLIPKLKYLESLGFSRSETVGMVLRCPALLTFSIENNFKPK 242
           D+  L +        S+E  L P  ++    GF   E   M+ R  AL TFS++ N  PK
Sbjct: 355 DVAVLLHRCPQTFGLSIESNLKPVTEFFLEKGFGLDEIGIMISRYGALYTFSLKENVMPK 414

Query: 243 FEYFSGEMHGKLEELKDFPQYFAFSLEKRIKPRYLETVQSGKKVPLSLMLKTTDDEFREL 302
           ++YF    + K  EL  FPQ+F +SL++RIKPRY    +SG ++ L+ +L  +  EF ++
Sbjct: 415 WDYFQTMDYPK-SELVKFPQFFGYSLQERIKPRYELVQRSGVRLLLNQVLSLSGIEFEKV 473

Query: 303 LRE 305
           +++
Sbjct: 475 VKK 473

[Close]

BLAST of MS013452 vs. ExPASy Swiss-Prot
Match: F4IHL3 (Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF2 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.1e-21
Identity = 76/261 (29.12%), Postives = 134/261 (51.34%), Query Frame = 0


Query: 52  YTPLHSTLSSQVKE-KILCLEIMGV---DAGKALSLNPSLHSVTLES-IHSVISFLQSKG 111
           Y  +    S QV E KI  L+  G+   + G+ L+  P L   ++E     ++ +    G
Sbjct: 340 YPKIIGFFSFQVMEKKINYLKEFGLSTEEVGRLLAYKPHLMGCSIEERWKPLVKYFYYLG 399

Query: 112 IHQKDFAKIFGMCPKILTSDVKTDLIPVFNFLSEDLKIPDQSFRRTINKCPRLLASSAKD 171
           I ++   +I  + P +   D++  + P   FL E + IP+++    + K P LL +S   
Sbjct: 400 IPKEGMKRILVVKPILYCIDLEKTIAPKVRFLQE-MGIPNEAIGNMLVKFPSLLTNSLYK 459

Query: 172 QLKP-ALFYLQRLGL--RDLEALAYHDSVLLVSSVERTLIPKLKYLESLGFSRSETVGMV 231
           +++P  +F L R G+  +D+  +   D  LL  S+   L P ++Y  SLG    +   M+
Sbjct: 460 KIRPVVIFLLTRAGVTQKDIGKVIAMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGEMI 519

Query: 232 LRCPALLTFSIENNFKPKFEYFSGEMHGKLEELKDFPQYFAFSLEKRIKPRYLETVQSGK 291
              P LL ++++ N +PK+ Y    M   L++L +FP++F++SLE+RI PR+   V++  
Sbjct: 520 ADFPMLLRYNVD-NLRPKYRYLRRTMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVENRV 579

Query: 292 KVPLSLMLKTTDDEFRELLRE 305
              L  ML  TD+EF   +R+
Sbjct: 580 NFKLRYMLACTDEEFERRVRD 598

[Close]

BLAST of MS013452 vs. ExPASy Swiss-Prot
Match: Q9ZT96 (Transcription termination factor MTERF4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF4 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.1e-17
Identity = 71/270 (26.30%), Postives = 118/270 (43.70%), Query Frame = 0


Query: 70  LEIMGVDAGKALSLNPSLHSVTLESIHSV-ISFLQSKGIHQKDFAKIFGMCPKILTSDVK 129
           L+I   D  + L   P +    LE   S  +++L   G+ +++   I    P+IL   V 
Sbjct: 225 LDIKPSDVPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVARREIGGILTRYPEILGMRVA 284

Query: 130 TDLIPVFNFLSEDLKIPDQSFRRTINKCPRLLASSAKDQLKPALFYLQRLGLRDL---EA 189
             + P+  +L E L IP  +  R I K P +L     D +KP +  LQ   +R+      
Sbjct: 285 RIIKPLVEYL-EVLGIPRLAAARLIEKRPHILGFELDDTVKPNVQILQDFNVRETSLPSI 344

Query: 190 LAYHDSVL-----------------------------------LVSSVERTLIPKLKYLE 249
           +A +  ++                                    VS  E  ++  + +L 
Sbjct: 345 IAQYPEIIGIDLKPKLDTQRKLLCSAIHLNPEDLGSLIERMPQFVSLSESPMLKHIDFLT 404

Query: 250 SLGFSRSETVGMVLRCPALLTFSIENNFKPKFEYFSGEMHGKLEELKDFPQYFAFSLEKR 301
             GFS  +T  MV+ CP +L  ++    K  FEYF  EM   L++L DFP +F + LE  
Sbjct: 405 KCGFSIDQTREMVIGCPQVLALNL-GIMKLSFEYFQKEMKRPLQDLVDFPAFFTYGLEST 464

[Close]

BLAST of MS013452 vs. ExPASy Swiss-Prot
Match: Q9FM80 (Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF9 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.0e-16
Identity = 61/265 (23.02%), Postives = 122/265 (46.04%), Query Frame = 0


Query: 45  LFHKHPLYTPLHSTLSSQVKEKILCLEIMGVDAGKALSLNPSLHSVTLE-SIHSVISFLQ 104
           ++ +H     ++   + +  + +L + +   D  + L   P +   T+E ++ + ISFL 
Sbjct: 204 MYERHMPSLQINVFSAQERLDYLLSVGVKHRDIKRMLLRQPQILQYTVENNLKAHISFLM 263

Query: 105 SKGIHQKDFAKIFGMCPKILTSDVKTDLIPVFNFLSEDLKIPDQSFRRTINKCPRLLASS 164
             GI      +I    P + +  V+  L P   +L E++ I +    + +   P++L   
Sbjct: 264 GLGIPNSKIGQIVAATPSLFSYSVENSLRPTIRYLIEEVGIKETDVGKVVQLSPQILVQR 323

Query: 165 AKDQLKPALFYLQRLGLRDLEALAYHDSV---------LLVSSVERTLIPKLKYLESLGF 224
                     +L +      E  A  DSV         LL  S++   +P++ +L S+G 
Sbjct: 324 LDITWNTRYMFLSK------ELGAPRDSVVKMVKKHPQLLHYSIDDGFLPRINFLRSIGM 383

Query: 225 SRSETVGMVLRCPALLTFSIENNFKPKFEYFSGEMHGKLEELKDFPQYFAFSLEKRIKP- 284
             S+ + ++     +L+ S+E+N KPK+ Y   E++ ++  L  +P Y + SL++RI+P 
Sbjct: 384 CNSDILKVLTSLTQVLSLSLEDNLKPKYMYLVNELNNEVHILTKYPMYLSLSLDQRIRPR 443

Query: 285 -RYLETVQSGKKVPLSLMLKTTDDE 298
            R+L  ++  +K P  L     +DE
Sbjct: 444 HRFLVELKKVRKGPFPLSSLVPNDE 462

[Close]

BLAST of MS013452 vs. ExPASy TrEMBL
Match: A0A6J1CE81 (transcription termination factor MTEF1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111010694 PE=3 SV=1)

HSP 1 Score: 599.4 bits (1544), Expect = 8.7e-168
Identity = 306/307 (99.67%), Postives = 306/307 (99.67%), Query Frame = 0


Query: 1   MPAATATAFHSSFCFSSHKLSSSPSNSHSNSHQPNTFLAAKPKTLFHKHPLYTPLHSTLS 60
           MPAATATAFHSSFCFSSHKLSSSPSNSHSNSHQPNT LAAKPKTLFHKHPLYTPLHSTLS
Sbjct: 1   MPAATATAFHSSFCFSSHKLSSSPSNSHSNSHQPNTLLAAKPKTLFHKHPLYTPLHSTLS 60

Query: 61  SQVKEKILCLEIMGVDAGKALSLNPSLHSVTLESIHSVISFLQSKGIHQKDFAKIFGMCP 120
           SQVKEKILCLEIMGVDAGKALSLNPSLHSVTLESIHSVISFLQSKGIHQKDFAKIFGMCP
Sbjct: 61  SQVKEKILCLEIMGVDAGKALSLNPSLHSVTLESIHSVISFLQSKGIHQKDFAKIFGMCP 120

Query: 121 KILTSDVKTDLIPVFNFLSEDLKIPDQSFRRTINKCPRLLASSAKDQLKPALFYLQRLGL 180
           KILTSDVKTDLIPVFNFLSEDLKIPDQSFRRTINKCPRLLASSAKDQLKPALFYLQRLGL
Sbjct: 121 KILTSDVKTDLIPVFNFLSEDLKIPDQSFRRTINKCPRLLASSAKDQLKPALFYLQRLGL 180

Query: 181 RDLEALAYHDSVLLVSSVERTLIPKLKYLESLGFSRSETVGMVLRCPALLTFSIENNFKP 240
           RDLEALAYHDSVLLVSSVERTLIPKLKYLESLGFSRSETVGMVLRCPALLTFSIENNFKP
Sbjct: 181 RDLEALAYHDSVLLVSSVERTLIPKLKYLESLGFSRSETVGMVLRCPALLTFSIENNFKP 240

Query: 241 KFEYFSGEMHGKLEELKDFPQYFAFSLEKRIKPRYLETVQSGKKVPLSLMLKTTDDEFRE 300
           KFEYFSGEMHGKLEELKDFPQYFAFSLEKRIKPRYLETVQSGKKVPLSLMLKTTDDEFRE
Sbjct: 241 KFEYFSGEMHGKLEELKDFPQYFAFSLEKRIKPRYLETVQSGKKVPLSLMLKTTDDEFRE 300

Query: 301 LLREGQG 308
           LLREGQG
Sbjct: 301 LLREGQG 307

[Close]

BLAST of MS013452 vs. ExPASy TrEMBL
Match: A0A5D3DB89 (Transcription termination factor MTEF1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G001070 PE=3 SV=1)

HSP 1 Score: 533.1 bits (1372), Expect = 7.7e-148
Identity = 276/308 (89.61%), Postives = 290/308 (94.16%), Query Frame = 0


Query: 1   MPAATATAFHSSFCFSSH-KLSSSPSNSHSNSHQPNTFLAAKPKTLFHKHPLYTPLHSTL 60
           M +++ATAFHSSFCFSSH KLSSSP    SNSHQPNT L+ KPKTL HKHPLYTPLHSTL
Sbjct: 1   MSSSSATAFHSSFCFSSHNKLSSSP----SNSHQPNTSLSPKPKTLLHKHPLYTPLHSTL 60

Query: 61  SSQVKEKILCLEIMGVDAGKALSLNPSLHSVTLESIHSVISFLQSKGIHQKDFAKIFGMC 120
           SSQ KEKILCLEIMGVD+GKALS NPSLH VTLESIHSVISFLQSKGIHQKDFAKIFGMC
Sbjct: 61  SSQTKEKILCLEIMGVDSGKALSQNPSLHCVTLESIHSVISFLQSKGIHQKDFAKIFGMC 120

Query: 121 PKILTSDVKTDLIPVFNFLSEDLKIPDQSFRRTINKCPRLLASSAKDQLKPALFYLQRLG 180
           PKILTSDVKTDLIPVFNFLSEDLKIPDQ+FR+ INKCPRLLASSA+DQLKPALFYLQRLG
Sbjct: 121 PKILTSDVKTDLIPVFNFLSEDLKIPDQNFRKAINKCPRLLASSAEDQLKPALFYLQRLG 180

Query: 181 LRDLEALAYHDSVLLVSSVERTLIPKLKYLESLGFSRSETVGMVLRCPALLTFSIENNFK 240
           L+DLEALAYHDSVLLVSSVE+TLIPKLKYLESLGF+RSETVGMVLRCPALLTFSIENNFK
Sbjct: 181 LKDLEALAYHDSVLLVSSVEKTLIPKLKYLESLGFTRSETVGMVLRCPALLTFSIENNFK 240

Query: 241 PKFEYFSGEMHGKLEELKDFPQYFAFSLEKRIKPRYLETVQSGKKVPLSLMLKTTDDEFR 300
           PKFEYFS EMH KLEELKDFPQYFAFSLEKRIKPR++ETV+SGKKVPLSLMLKTTD EFR
Sbjct: 241 PKFEYFSVEMHRKLEELKDFPQYFAFSLEKRIKPRHVETVESGKKVPLSLMLKTTDVEFR 300

Query: 301 ELLREGQG 308
           ELL EG G
Sbjct: 301 ELLAEGGG 304

[Close]

BLAST of MS013452 vs. ExPASy TrEMBL
Match: A0A0A0LVD4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G535790 PE=3 SV=1)

HSP 1 Score: 533.1 bits (1372), Expect = 7.7e-148
Identity = 275/308 (89.29%), Postives = 290/308 (94.16%), Query Frame = 0


Query: 1   MPAATATAFHSSFCFSSH-KLSSSPSNSHSNSHQPNTFLAAKPKTLFHKHPLYTPLHSTL 60
           M +++ATAFHSSFCFSSH KLSSSP    SNSHQPNT L+ KPKTL HKHPLYTPLHST+
Sbjct: 1   MSSSSATAFHSSFCFSSHNKLSSSP----SNSHQPNTSLSPKPKTLLHKHPLYTPLHSTV 60

Query: 61  SSQVKEKILCLEIMGVDAGKALSLNPSLHSVTLESIHSVISFLQSKGIHQKDFAKIFGMC 120
           SSQ KEKILCLEIMGVD+GKALS NPSLHSVTLESIHSVISFLQSKGIHQKDFAKIFGMC
Sbjct: 61  SSQTKEKILCLEIMGVDSGKALSQNPSLHSVTLESIHSVISFLQSKGIHQKDFAKIFGMC 120

Query: 121 PKILTSDVKTDLIPVFNFLSEDLKIPDQSFRRTINKCPRLLASSAKDQLKPALFYLQRLG 180
           PKILTSDVKTDL+PVFNFLSEDLKIPDQ+FR+ INKCPRLLASSA+DQLKPALFYLQRLG
Sbjct: 121 PKILTSDVKTDLVPVFNFLSEDLKIPDQNFRKAINKCPRLLASSAEDQLKPALFYLQRLG 180

Query: 181 LRDLEALAYHDSVLLVSSVERTLIPKLKYLESLGFSRSETVGMVLRCPALLTFSIENNFK 240
           L+DLEALAYHDSVLLVSSVE+TLIPKLKYLESLGF+RSE VGMVLRCPALLTFSIENNFK
Sbjct: 181 LKDLEALAYHDSVLLVSSVEKTLIPKLKYLESLGFTRSEIVGMVLRCPALLTFSIENNFK 240

Query: 241 PKFEYFSGEMHGKLEELKDFPQYFAFSLEKRIKPRYLETVQSGKKVPLSLMLKTTDDEFR 300
           PKFEYFS EMH KLEELKDFPQYFAFSLEKRIKPRY+ETV+SGKKVPLSLMLKTTD EFR
Sbjct: 241 PKFEYFSVEMHKKLEELKDFPQYFAFSLEKRIKPRYVETVESGKKVPLSLMLKTTDVEFR 300

Query: 301 ELLREGQG 308
           ELL EG G
Sbjct: 301 ELLAEGGG 304

[Close]

BLAST of MS013452 vs. ExPASy TrEMBL
Match: A0A1S3BBS5 (transcription termination factor MTEF1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487950 PE=3 SV=1)

HSP 1 Score: 533.1 bits (1372), Expect = 7.7e-148
Identity = 276/308 (89.61%), Postives = 290/308 (94.16%), Query Frame = 0


Query: 1   MPAATATAFHSSFCFSSH-KLSSSPSNSHSNSHQPNTFLAAKPKTLFHKHPLYTPLHSTL 60
           M +++ATAFHSSFCFSSH KLSSSP    SNSHQPNT L+ KPKTL HKHPLYTPLHSTL
Sbjct: 1   MSSSSATAFHSSFCFSSHNKLSSSP----SNSHQPNTSLSPKPKTLLHKHPLYTPLHSTL 60

Query: 61  SSQVKEKILCLEIMGVDAGKALSLNPSLHSVTLESIHSVISFLQSKGIHQKDFAKIFGMC 120
           SSQ KEKILCLEIMGVD+GKALS NPSLH VTLESIHSVISFLQSKGIHQKDFAKIFGMC
Sbjct: 61  SSQTKEKILCLEIMGVDSGKALSQNPSLHCVTLESIHSVISFLQSKGIHQKDFAKIFGMC 120

Query: 121 PKILTSDVKTDLIPVFNFLSEDLKIPDQSFRRTINKCPRLLASSAKDQLKPALFYLQRLG 180
           PKILTSDVKTDLIPVFNFLSEDLKIPDQ+FR+ INKCPRLLASSA+DQLKPALFYLQRLG
Sbjct: 121 PKILTSDVKTDLIPVFNFLSEDLKIPDQNFRKAINKCPRLLASSAEDQLKPALFYLQRLG 180

Query: 181 LRDLEALAYHDSVLLVSSVERTLIPKLKYLESLGFSRSETVGMVLRCPALLTFSIENNFK 240
           L+DLEALAYHDSVLLVSSVE+TLIPKLKYLESLGF+RSETVGMVLRCPALLTFSIENNFK
Sbjct: 181 LKDLEALAYHDSVLLVSSVEKTLIPKLKYLESLGFTRSETVGMVLRCPALLTFSIENNFK 240

Query: 241 PKFEYFSGEMHGKLEELKDFPQYFAFSLEKRIKPRYLETVQSGKKVPLSLMLKTTDDEFR 300
           PKFEYFS EMH KLEELKDFPQYFAFSLEKRIKPR++ETV+SGKKVPLSLMLKTTD EFR
Sbjct: 241 PKFEYFSVEMHRKLEELKDFPQYFAFSLEKRIKPRHVETVESGKKVPLSLMLKTTDVEFR 300

Query: 301 ELLREGQG 308
           ELL EG G
Sbjct: 301 ELLAEGGG 304

[Close]

BLAST of MS013452 vs. ExPASy TrEMBL
Match: A0A6J1EFX2 (transcription termination factor MTEF1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111433963 PE=3 SV=1)

HSP 1 Score: 519.6 bits (1337), Expect = 8.8e-144
Identity = 270/307 (87.95%), Postives = 282/307 (91.86%), Query Frame = 0


Query: 1   MPAATATAFHSSFCFSSHKLSSSPSNSHSNSHQPNTFLAAKPKTLFHKHPLYTPLHSTLS 60
           MPAA   AF SSFCFSSH+LS+SP    SNS QPNTFLAAKPK+LFHKHPLYTPLHSTLS
Sbjct: 1   MPAA---AFPSSFCFSSHELSASP----SNSQQPNTFLAAKPKSLFHKHPLYTPLHSTLS 60

Query: 61  SQVKEKILCLEIMGVDAGKALSLNPSLHSVTLESIHSVISFLQSKGIHQKDFAKIFGMCP 120
           SQ+KEKILCLEIMGVDAGKALS NPSLHSVTLESIHSVISFLQSKGIHQKDFAKIFGMCP
Sbjct: 61  SQIKEKILCLEIMGVDAGKALSQNPSLHSVTLESIHSVISFLQSKGIHQKDFAKIFGMCP 120

Query: 121 KILTSDVKTDLIPVFNFLSEDLKIPDQSFRRTINKCPRLLASSAKDQLKPALFYLQRLGL 180
           KILTSDVK DLIPVF+FLSEDLKIPDQ+FRR INKCPRLLASSAKDQLKPALFYLQRLG 
Sbjct: 121 KILTSDVKADLIPVFSFLSEDLKIPDQNFRRVINKCPRLLASSAKDQLKPALFYLQRLGF 180

Query: 181 RDLEALAYHDSVLLVSSVERTLIPKLKYLESLGFSRSETVGMVLRCPALLTFSIENNFKP 240
           +DLEALAY DS LLVSSVE+TLIPKLKYL+SLGFSRSETVGMVLRCPALLTFSIENN KP
Sbjct: 181 KDLEALAYQDSALLVSSVEKTLIPKLKYLQSLGFSRSETVGMVLRCPALLTFSIENNLKP 240

Query: 241 KFEYFSGEMHGKLEELKDFPQYFAFSLEKRIKPRYLETVQSGKKVPLSLMLKTTDDEFRE 300
           KFEYFSGEM  K+EELKDFPQYF FSLEKRIKPRY+ETVQSGK V L LMLK TDDEF+E
Sbjct: 241 KFEYFSGEMQRKVEELKDFPQYFGFSLEKRIKPRYVETVQSGKNVALPLMLKATDDEFKE 300

Query: 301 LLREGQG 308
           LLRE  G
Sbjct: 301 LLREEGG 300

[Close]

BLAST of MS013452 vs. TAIR 10
Match: AT2G34620.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 379.8 bits (974), Expect = 2.1e-105
Identity = 195/295 (66.10%), Postives = 233/295 (78.98%), Query Frame = 0


Query: 11  SSFCFSSHKLSSSPSNSHSNSHQPNTFLAAKP---KTLFHKHPLYTPLHSTLSSQVKEKI 70
           SS  + S K  S P  S S      TFL+ KP   KT  H HPL+T    T++ Q+KEKI
Sbjct: 6   SSSLYISPKKPSCPQQSQS------TFLSTKPTTIKTNLHSHPLFTVADQTVTLQMKEKI 65

Query: 71  LCLEIMGVDAGKALSLNPSLHSVTLESIHSVISFLQSKGIHQKDFAKIFGMCPKILTSDV 130
           LCLE+MG+D+GKALSLNP L S  L+SI SV+ FLQSKGI+  D  +I GMCPKILTSDV
Sbjct: 66  LCLELMGIDSGKALSLNPCLCSAPLDSIQSVLHFLQSKGIYPNDLPRILGMCPKILTSDV 125

Query: 131 KTDLIPVFNFLSEDLKIPDQSFRRTINKCPRLLASSAKDQLKPALFYLQRLGLRDLEALA 190
           +T+L PVF FLS DL +P+ +FRR I KCPRLL SS +DQLKPALFYLQRLGL+DLEALA
Sbjct: 126 RTELYPVFMFLSNDLHVPENAFRRVIKKCPRLLISSVEDQLKPALFYLQRLGLKDLEALA 185

Query: 191 YHDSVLLVSSVERTLIPKLKYLESLGFSRSETVGMVLRCPALLTFSIENNFKPKFEYFSG 250
           Y D +LLVSSVE TLIPKL++LES+GFSR E +GM+LRCPAL TFSIENNFKPK +YF  
Sbjct: 186 YQDPILLVSSVEHTLIPKLRFLESIGFSRPEAIGMILRCPALFTFSIENNFKPKLDYFMS 245

Query: 251 EMHGKLEELKDFPQYFAFSLEKRIKPRYLETVQSGKKVPLSLMLKTTDDEFRELL 303
           E+ GKLE LK+FPQYFAFSLEKRIKPR+LE+++ G ++PLSLMLK+TD+EF +LL
Sbjct: 246 EIKGKLENLKEFPQYFAFSLEKRIKPRHLESMERGLELPLSLMLKSTDEEFEQLL 294

[Close]

BLAST of MS013452 vs. TAIR 10
Match: AT2G03050.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 221.9 bits (564), Expect = 7.3e-58
Identity = 115/242 (47.52%), Postives = 166/242 (68.60%), Query Frame = 0


Query: 64  KEKILCLEIMGVDAGKALSLNPSLHSVTLESIHSVISFLQSKGIHQKDFAKIFGMCPKIL 123
           +EK++ L+ + VD  KAL +NPSL S  + S+ SV + L S G+ +    +I  M P +L
Sbjct: 33  REKLIYLQDLNVDPHKALRVNPSLRSAPISSVVSVETLLSSTGLSRPAVGRILDMFPDLL 92

Query: 124 TSDVKTDLIPVFNFLSEDLKIPDQSFRRTINKCPRLLASSAKDQLKPALFYLQRLGLRDL 183
           TSD +++++PV  FLS ++ I +Q   ++I++CPRLL SS   QL+PAL +L+ LG    
Sbjct: 93  TSDPESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGFVGR 152

Query: 184 EALAYHDSVLLVSSVERTLIPKLKYL-ESLGFSRSETVGMVLRCPALLTFSIENNFKPKF 243
           + +   ++VLLVS+VERTLIPK++YL E LGF+R E   MV+R PALLT+S++NN  PK 
Sbjct: 153 DTITSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPKV 212

Query: 244 EYFSGEMHGKLEELKDFPQYFAFSLEKRIKPRYLETVQSGKKVPLSLMLKTTDDEFRELL 303
           E+F  EM G ++ELK FPQYF+FSLE++IKPR+    + G  +PLS MLK +D +F   L
Sbjct: 213 EFFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVSDGQFNHWL 272

Query: 304 RE 305
            E
Sbjct: 273 LE 274

[Close]

BLAST of MS013452 vs. TAIR 10
Match: AT2G36000.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 171.4 bits (433), Expect = 1.1e-42
Identity = 115/315 (36.51%), Postives = 170/315 (53.97%), Query Frame = 0


Query: 6   ATAFHSSFCFSSHKLSSSPSNSHSN-----SHQPNTFLAAKPKTLFHKHPLYTPLHS--- 65
           A +F SS   S H    S S    N     S +PNT   +   + F K P    L S   
Sbjct: 5   ALSFLSSSLPSLHHNFPSLSRLRFNNFPALSFKPNT---SSSSSSFFKSPDIPSLSSTTT 64

Query: 66  ------TLSSQVKEKILCLEIMGVDAGKALSLNPSLHSVTLESIHSVISFLQSKGIH--Q 125
                 TL S + EK++ L+ +G+D    ++ +P L S  L ++ SV+ ++ +  I+   
Sbjct: 65  TTTTTETLESSIHEKLIYLDSLGIDFLTLINRHPPLLSTALSAVESVVDYMTTPPINFTL 124

Query: 126 KDFAKIFGMCPKILTSDVKTDLIPVFNFLSEDLKIPDQSF--RRTINKCPRLLASSAKDQ 185
           +DF ++  MCP++LTS + +  IPV  FL  ++ + D  F  R+ + + PRLLA S   Q
Sbjct: 125 QDFRRLVSMCPELLTSPLTSHTIPVITFLLREVGV-DSIFDLRQALRRRPRLLACSVDHQ 184

Query: 186 LKPALFYLQRLGLRDLEALAYHDSVLLVSSVERTLIPKLKYLESLGFSRSETVGMVLRCP 245
           L+P L++LQR+G+ D     Y    LL  SV+  L+P++ Y E LGFSR     M  R P
Sbjct: 185 LRPTLYFLQRIGILDPHKHTY----LLSCSVDNKLVPRIDYFEKLGFSRRSATAMFKRFP 244

Query: 246 ALLTFSIENNFKPKFEYFSGEMHGKLEELKDFPQYFAFSLEKRIKPRYLETVQSGKKVPL 303
            L  +SI  N++PK +Y   EM   + E+ +FPQYF+FSLE RIKPR+      G + PL
Sbjct: 245 QLFNYSIAENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEACAAKGVRFPL 304

[Close]

BLAST of MS013452 vs. TAIR 10
Match: AT2G36000.2 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 171.4 bits (433), Expect = 1.1e-42
Identity = 115/315 (36.51%), Postives = 170/315 (53.97%), Query Frame = 0


Query: 6   ATAFHSSFCFSSHKLSSSPSNSHSN-----SHQPNTFLAAKPKTLFHKHPLYTPLHS--- 65
           A +F SS   S H    S S    N     S +PNT   +   + F K P    L S   
Sbjct: 5   ALSFLSSSLPSLHHNFPSLSRLRFNNFPALSFKPNT---SSSSSSFFKSPDIPSLSSTTT 64

Query: 66  ------TLSSQVKEKILCLEIMGVDAGKALSLNPSLHSVTLESIHSVISFLQSKGIH--Q 125
                 TL S + EK++ L+ +G+D    ++ +P L S  L ++ SV+ ++ +  I+   
Sbjct: 65  TTTTTETLESSIHEKLIYLDSLGIDFLTLINRHPPLLSTALSAVESVVDYMTTPPINFTL 124

Query: 126 KDFAKIFGMCPKILTSDVKTDLIPVFNFLSEDLKIPDQSF--RRTINKCPRLLASSAKDQ 185
           +DF ++  MCP++LTS + +  IPV  FL  ++ + D  F  R+ + + PRLLA S   Q
Sbjct: 125 QDFRRLVSMCPELLTSPLTSHTIPVITFLLREVGV-DSIFDLRQALRRRPRLLACSVDHQ 184

Query: 186 LKPALFYLQRLGLRDLEALAYHDSVLLVSSVERTLIPKLKYLESLGFSRSETVGMVLRCP 245
           L+P L++LQR+G+ D     Y    LL  SV+  L+P++ Y E LGFSR     M  R P
Sbjct: 185 LRPTLYFLQRIGILDPHKHTY----LLSCSVDNKLVPRIDYFEKLGFSRRSATAMFKRFP 244

Query: 246 ALLTFSIENNFKPKFEYFSGEMHGKLEELKDFPQYFAFSLEKRIKPRYLETVQSGKKVPL 303
            L  +SI  N++PK +Y   EM   + E+ +FPQYF+FSLE RIKPR+      G + PL
Sbjct: 245 QLFNYSIAENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEACAAKGVRFPL 304

[Close]

BLAST of MS013452 vs. TAIR 10
Match: AT3G18870.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 147.9 bits (372), Expect = 1.3e-35
Identity = 91/249 (36.55%), Postives = 145/249 (58.23%), Query Frame = 0


Query: 54  PLHSTLSSQVKEKILCLEIMGVDAGKALSLNPSL--HSVTLESIHSVISFLQSKGIHQKD 113
           PL+    +  +E +  L  +G+     +  NP L   +  L  I S ++ L+SKGI  +D
Sbjct: 27  PLYLKFQTSHRENLRHLSSLGI-----VPQNPRLAPPANDLSVILSAVNLLKSKGISDED 86

Query: 114 FAKIFGMCPKIL--TSDVKTDLIPVFNFLSEDLKIPDQSFRRTINKCPRLLASSAKDQLK 173
           F ++  +CP++   T D+ + L PVF+FL+ +L    +  R  I  CP +L S  +  L+
Sbjct: 87  FPRLVFLCPQLFSPTFDI-SKLDPVFDFLTGELGASAEESRGLIVNCPNILFSDVEYCLR 146

Query: 174 PALFYLQRLGLRDLEALAYHDSVLLVSSVERTLIPKLKYLESLGFSRSETVGMVLRCPAL 233
           P L YL+ LG+R+L   +  ++ +L + VE+ L  K+++L+S+GF   E   +  R PA+
Sbjct: 147 PTLVYLKELGVRNLNRASKTNAHVLNTRVEK-LRAKMRFLKSIGFEHEEAARVCGRIPAI 206

Query: 234 LTFSIENNFKPKFEYFSGEMHGKLEELKDFPQYFAFSLEKRIKPRYLETVQSGKKVPLSL 293
             +S+E+N +PKFE+   +M  +LEELK FPQYFAFSL KRI+PR+    +   +V LS 
Sbjct: 207 FGYSVEDNLRPKFEFLVYDMERELEELKKFPQYFAFSLGKRIRPRHWHLKKKNVRVSLSR 266

Query: 294 MLKTTDDEF 299
           ML   D +F
Sbjct: 267 MLMWGDQKF 268

The following BLAST results are available for this feature:

BLAST of MS013452 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139889.1	1.8e-167	99.67	transcription termination factor MTEF1, chloroplastic [Momordica charantia]	[more]
XP_038895185.1	1.1e-151	91.21	transcription termination factor MTEF1, chloroplastic [Benincasa hispida]	[more]
XP_008444692.1	1.6e-147	89.61	PREDICTED: transcription termination factor MTEF1, chloroplastic [Cucumis melo] ...	[more]
XP_004154376.1	1.6e-147	89.29	transcription termination factor MTEF1, chloroplastic [Cucumis sativus] >KGN6587...	[more]
KAG6583877.1	1.1e-143	87.95	Transcription termination factor MTEF1, chloroplastic, partial [Cucurbita argyro...	[more]

BLAST of MS013452 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84X53	1.0e-56	47.52	Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX...	[more]
F4JVI3	8.7e-24	30.86	Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana O...	[more]
F4IHL3	4.1e-21	29.12	Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana O...	[more]
Q9ZT96	2.1e-17	26.30	Transcription termination factor MTERF4, chloroplastic OS=Arabidopsis thaliana O...	[more]
Q9FM80	3.0e-16	23.02	Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana O...	[more]

BLAST of MS013452 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CE81	8.7e-168	99.67	transcription termination factor MTEF1, chloroplastic OS=Momordica charantia OX=...	[more]
A0A5D3DB89	7.7e-148	89.61	Transcription termination factor MTEF1 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A0A0LVD4	7.7e-148	89.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G535790 PE=3 SV=1	[more]
A0A1S3BBS5	7.7e-148	89.61	transcription termination factor MTEF1, chloroplastic OS=Cucumis melo OX=3656 GN...	[more]
A0A6J1EFX2	8.8e-144	87.95	transcription termination factor MTEF1, chloroplastic-like OS=Cucurbita moschata...	[more]

BLAST of MS013452 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34620.1	2.1e-105	66.10	Mitochondrial transcription termination factor family protein	[more]
AT2G03050.1	7.3e-58	47.52	Mitochondrial transcription termination factor family protein	[more]
AT2G36000.1	1.1e-42	36.51	Mitochondrial transcription termination factor family protein	[more]
AT2G36000.2	1.1e-42	36.51	Mitochondrial transcription termination factor family protein	[more]
AT3G18870.1	1.3e-35	36.55	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 113..145 e-value: 0.01 score: 25.0 coord: 220..252 e-value: 3.3E-4 score: 30.0 coord: 184..215 e-value: 1.1 score: 18.3 coord: 78..108 e-value: 42.0 score: 13.0 coord: 150..181 e-value: 0.0059 score: 25.8 coord: 253..286 e-value: 0.63 score: 19.1
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 193..298 e-value: 2.9E-27 score: 95.4 coord: 63..182 e-value: 3.7E-11 score: 42.5
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 11..304
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 149..304 e-value: 3.6E-31 score: 110.3
None	No IPR available	PANTHER	PTHR13068:SF78	MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN	coord: 11..304

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS013452.1	MS013452.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003690	double-stranded DNA binding