MS013448 (gene) Bitter gourd (TR) v1

Overview


Name	MS013448
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein Ycf2
Location	scaffold402: 1622310 .. 1622537 (-)
RNA-Seq Expression	MS013448
Synteny	MS013448

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTTTGTCCCTTCCCGGCTATCAGAAAATAAAGATATAGTTAATACATTCAAGATAATTACGTATTTACAAAATACTGTTTCAATTCATCCTATTTCTTCATGTGATATGGTTCCGAAGGATGAACCGGATATGGATAGTTCCGATAAGATTTCATTCTTGAACAAAAATCCATTTATTTATTTATTTAATCTATTCCATAATCGAAACAGGATGGGAAAAATATTA

mRNA sequence

TCTTTTGTCCCTTCCCGGCTATCAGAAAATAAAGATATAGTTAATACATTCAAGATAATTACGTATTTACAAAATACTGTTTCAATTCATCCTATTTCTTCATGTGATATGGTTCCGAAGGATGAACCGGATATGGATAGTTCCGATAAGATTTCATTCTTGAACAAAAATCCATTTATTTATTTATTTAATCTATTCCATAATCGAAACAGGATGGGAAAAATATTA

Coding sequence (CDS)

TCTTTTGTCCCTTCCCGGCTATCAGAAAATAAAGATATAGTTAATACATTCAAGATAATTACGTATTTACAAAATACTGTTTCAATTCATCCTATTTCTTCATGTGATATGGTTCCGAAGGATGAACCGGATATGGATAGTTCCGATAAGATTTCATTCTTGAACAAAAATCCATTTATTTATTTATTTAATCTATTCCATAATCGAAACAGGATGGGAAAAATATTA

Protein sequence

SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISSCDMVPKDEPDMDSSDKISFLNKNPFIYLFNLFHNRNRMGKIL

Homology

[Close]

BLAST of MS013448 vs. NCBI nr
Match: AWI73185.1 (Ycf2 [Melodinus cambodiensis])

HSP 1 Score: 130.2 bits (326), Expect = 7.6e-27
Identity = 66/79 (83.54%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 1   SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKN 60
           SFVPSR SENK++VN FKIITYLQNTVSIHPISS   CDMVPKDEPDMDSS+KISFLNKN
Sbjct: 528 SFVPSRRSENKEMVNIFKIITYLQNTVSIHPISSDPGCDMVPKDEPDMDSSNKISFLNKN 587

Query: 61  PFIYLFNLFHNRNRMGKIL 77
           PFIYLF+LFH+RNR G  L
Sbjct: 588 PFIYLFHLFHDRNRGGYTL 606

[Close]

BLAST of MS013448 vs. NCBI nr
Match: QWK49731.1 (hypothetical protein RF2 [Ulmus lanceifolia] >QWK49751.1 hypothetical protein RF2 [Ulmus lanceifolia] >QZQ52627.1 Ycf2 protein [Ulmus lanceifolia] >QZQ52645.1 Ycf2 protein [Ulmus lanceifolia])

HSP 1 Score: 129.8 bits (325), Expect = 1.0e-26
Identity = 66/79 (83.54%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1   SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKN 60
           SFVPSR SENK+IVN FKIITYLQNTVSIHPISS   CDMVPKDEPDMDSS+KISFLNKN
Sbjct: 524 SFVPSRRSENKEIVNIFKIITYLQNTVSIHPISSDPGCDMVPKDEPDMDSSNKISFLNKN 583

Query: 61  PFIYLFNLFHNRNRMGKIL 77
           PF YLF+LFH+RNR G  L
Sbjct: 584 PFFYLFHLFHDRNRGGYAL 602

[Close]

BLAST of MS013448 vs. NCBI nr
Match: YP_009733129.1 (Ycf2 protein [Ulmus elongata] >YP_009733145.1 Ycf2 protein [Ulmus elongata] >QHV33953.1 Ycf2 protein [Ulmus elongata] >QHV33969.1 Ycf2 protein [Ulmus elongata] >QWK49124.1 hypothetical protein RF2 [Ulmus elongata] >QWK49144.1 hypothetical protein RF2 [Ulmus elongata])

HSP 1 Score: 129.8 bits (325), Expect = 1.0e-26
Identity = 66/79 (83.54%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1   SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKN 60
           SFVPSR SENK+IVN FKIITYLQNTVSIHPISS   CDMVPKDEPDMDSS+KISFLNKN
Sbjct: 524 SFVPSRRSENKEIVNIFKIITYLQNTVSIHPISSDPGCDMVPKDEPDMDSSNKISFLNKN 583

Query: 61  PFIYLFNLFHNRNRMGKIL 77
           PF YLF+LFH+RNR G  L
Sbjct: 584 PFFYLFHLFHDRNRGGYAL 602

[Close]

BLAST of MS013448 vs. NCBI nr
Match: QOE56525.1 (hypothetical protein RF2 [Zelkova serrata] >QOE56543.1 hypothetical protein RF2 [Zelkova serrata])

HSP 1 Score: 129.8 bits (325), Expect = 1.0e-26
Identity = 66/79 (83.54%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1   SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKN 60
           SFVPSR SENK+IVN FKIITYLQNTVSIHPISS   CDMVPKDEPDMDSS+KISFLNKN
Sbjct: 524 SFVPSRRSENKEIVNIFKIITYLQNTVSIHPISSDPGCDMVPKDEPDMDSSNKISFLNKN 583

Query: 61  PFIYLFNLFHNRNRMGKIL 77
           PF YLF+LFH+RNR G  L
Sbjct: 584 PFFYLFHLFHDRNRGGYAL 602

[Close]

BLAST of MS013448 vs. NCBI nr
Match: YP_009557903.1 (Ycf2 [Zelkova serrata] >YP_009557922.1 Ycf2 [Zelkova serrata] >YP_009560336.1 hypothetical protein RF2 [Zelkova schneideriana] >YP_009560354.1 hypothetical protein RF2 [Zelkova schneideriana] >QWK50856.1 hypothetical protein RF2 [Zelkova abelicea] >QWK50943.1 hypothetical protein RF2 [Zelkova carpinifolia] >AUJ19171.1 Ycf2 [Zelkova serrata] >AUJ19190.1 Ycf2 [Zelkova serrata] >QAA79260.1 hypothetical protein RF2 [Zelkova schneideriana])

HSP 1 Score: 129.8 bits (325), Expect = 1.0e-26
Identity = 66/79 (83.54%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1   SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKN 60
           SFVPSR SENK+IVN FKIITYLQNTVSIHPISS   CDMVPKDEPDMDSS+KISFLNKN
Sbjct: 524 SFVPSRRSENKEIVNIFKIITYLQNTVSIHPISSDPGCDMVPKDEPDMDSSNKISFLNKN 583

Query: 61  PFIYLFNLFHNRNRMGKIL 77
           PF YLF+LFH+RNR G  L
Sbjct: 584 PFFYLFHLFHDRNRGGYAL 602

[Close]

BLAST of MS013448 vs. ExPASy Swiss-Prot
Match: Q2QD30 (Protein Ycf2 OS=Cucumis sativus OX=3659 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.9e-28
Identity = 65/79 (82.28%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 1   SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKN 60
           SFVPSR SENK+IVN FKIITYLQNTVSIHPISS   CDMVPKDE DMDSS+KISFL KN
Sbjct: 236 SFVPSRRSENKEIVNIFKIITYLQNTVSIHPISSDPGCDMVPKDELDMDSSNKISFLKKN 295

Query: 61  PFIYLFNLFHNRNRMGKIL 77
           PFIYLF+LFH+RNR G  L
Sbjct: 296 PFIYLFHLFHDRNRRGYTL 314

[Close]

BLAST of MS013448 vs. ExPASy Swiss-Prot
Match: Q8S8V2 (Protein Ycf2 A OS=Atropa belladonna OX=33113 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.2e-28
Identity = 64/79 (81.01%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 1   SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKN 60
           SFVPSR SENK++VN FKIITYLQNTVSIHPISS   CDMVPKDEPDMDSS+KISFLNKN
Sbjct: 526 SFVPSRRSENKEMVNIFKIITYLQNTVSIHPISSDPGCDMVPKDEPDMDSSNKISFLNKN 585

Query: 61  PFIYLFNLFHNRNRMGKIL 77
           PF  LF+LFH+RNR G  L
Sbjct: 586 PFFDLFHLFHDRNRGGYTL 604

[Close]

BLAST of MS013448 vs. ExPASy Swiss-Prot
Match: Q8S8U1 (Protein Ycf2 B OS=Atropa belladonna OX=33113 GN=ycf2-B PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.2e-28
Identity = 64/79 (81.01%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 1   SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKN 60
           SFVPSR SENK++VN FKIITYLQNTVSIHPISS   CDMVPKDEPDMDSS+KISFLNKN
Sbjct: 526 SFVPSRRSENKEMVNIFKIITYLQNTVSIHPISSDPGCDMVPKDEPDMDSSNKISFLNKN 585

Query: 61  PFIYLFNLFHNRNRMGKIL 77
           PF  LF+LFH+RNR G  L
Sbjct: 586 PFFDLFHLFHDRNRGGYTL 604

[Close]

BLAST of MS013448 vs. ExPASy Swiss-Prot
Match: Q33BV3 (Protein Ycf2 OS=Nicotiana tomentosiformis OX=4098 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.2e-28
Identity = 64/79 (81.01%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 1   SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKN 60
           SFVPSR SENK++VN FKIITYLQNTVSIHPISS   CDMVPKDEPDMDSS+KISFLNKN
Sbjct: 526 SFVPSRRSENKEMVNIFKIITYLQNTVSIHPISSDPGCDMVPKDEPDMDSSNKISFLNKN 585

Query: 61  PFIYLFNLFHNRNRMGKIL 77
           PF  LF+LFH+RNR G  L
Sbjct: 586 PFFDLFHLFHDRNRGGYTL 604

[Close]

BLAST of MS013448 vs. ExPASy Swiss-Prot
Match: Q0ZIV6 (Protein Ycf2 OS=Vitis vinifera OX=29760 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.2e-28
Identity = 64/79 (81.01%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 1   SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKN 60
           SFVPSR SENK++VN FKIITYLQNTVSIHPISS   CDMVPKDEPDMDSS+KISFLNKN
Sbjct: 528 SFVPSRRSENKEMVNIFKIITYLQNTVSIHPISSDPGCDMVPKDEPDMDSSNKISFLNKN 587

Query: 61  PFIYLFNLFHNRNRMGKIL 77
           PF  LF+LFH+RNR G  L
Sbjct: 588 PFFDLFHLFHDRNRGGYTL 606

[Close]

BLAST of MS013448 vs. ExPASy TrEMBL
Match: A0A2S1UDZ5 (Protein Ycf2 OS=Melodinus cambodiensis OX=2066943 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.7e-27
Identity = 66/79 (83.54%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 1   SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKN 60
           SFVPSR SENK++VN FKIITYLQNTVSIHPISS   CDMVPKDEPDMDSS+KISFLNKN
Sbjct: 528 SFVPSRRSENKEMVNIFKIITYLQNTVSIHPISSDPGCDMVPKDEPDMDSSNKISFLNKN 587

Query: 61  PFIYLFNLFHNRNRMGKIL 77
           PFIYLF+LFH+RNR G  L
Sbjct: 588 PFIYLFHLFHDRNRGGYTL 606

[Close]

BLAST of MS013448 vs. ExPASy TrEMBL
Match: A0A3G6ILA3 (Protein Ycf2 OS=Hemiptelea davidii OX=63068 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.8e-27
Identity = 66/79 (83.54%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1   SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKN 60
           SFVPSR SENK+IVN FKIITYLQNTVSIHPISS   CDMVPKDEPDMDSS+KISFLNKN
Sbjct: 524 SFVPSRRSENKEIVNIFKIITYLQNTVSIHPISSDPGCDMVPKDEPDMDSSNKISFLNKN 583

Query: 61  PFIYLFNLFHNRNRMGKIL 77
           PF YLF+LFH+RNR G  L
Sbjct: 584 PFFYLFHLFHDRNRGGYAL 602

[Close]

BLAST of MS013448 vs. ExPASy TrEMBL
Match: A0A1L5YDF8 (Protein Ycf2 OS=Ulmus davidiana OX=1297873 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.8e-27
Identity = 66/79 (83.54%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1   SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKN 60
           SFVPSR SENK+IVN FKIITYLQNTVSIHPISS   CDMVPKDEPDMDSS+KISFLNKN
Sbjct: 524 SFVPSRRSENKEIVNIFKIITYLQNTVSIHPISSDPGCDMVPKDEPDMDSSNKISFLNKN 583

Query: 61  PFIYLFNLFHNRNRMGKIL 77
           PF YLF+LFH+RNR G  L
Sbjct: 584 PFFYLFHLFHDRNRGGYAL 602

[Close]

BLAST of MS013448 vs. ExPASy TrEMBL
Match: A0A2S1FWN5 (Protein Ycf2 OS=Ulmus gaussenii OX=1737301 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.8e-27
Identity = 66/79 (83.54%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1   SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKN 60
           SFVPSR SENK+IVN FKIITYLQNTVSIHPISS   CDMVPKDEPDMDSS+KISFLNKN
Sbjct: 524 SFVPSRRSENKEIVNIFKIITYLQNTVSIHPISSDPGCDMVPKDEPDMDSSNKISFLNKN 583

Query: 61  PFIYLFNLFHNRNRMGKIL 77
           PF YLF+LFH+RNR G  L
Sbjct: 584 PFFYLFHLFHDRNRGGYAL 602

[Close]

BLAST of MS013448 vs. ExPASy TrEMBL
Match: A0A1L5YEA1 (Protein Ycf2 OS=Ulmus pumila OX=198266 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.8e-27
Identity = 66/79 (83.54%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1   SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKN 60
           SFVPSR SENK+IVN FKIITYLQNTVSIHPISS   CDMVPKDEPDMDSS+KISFLNKN
Sbjct: 524 SFVPSRRSENKEIVNIFKIITYLQNTVSIHPISSDPGCDMVPKDEPDMDSSNKISFLNKN 583

Query: 61  PFIYLFNLFHNRNRMGKIL 77
           PF YLF+LFH+RNR G  L
Sbjct: 584 PFFYLFHLFHDRNRGGYAL 602

[Close]

BLAST of MS013448 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 119.4 bits (298), Expect = 1.3e-27
Identity = 63/79 (79.75%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 1   SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKN 60
           SFVPSR SENK+IVN FKIITYLQNTVSIHPISS   CDMVPKDE DMDSS+KISFLNKN
Sbjct: 528 SFVPSRRSENKEIVNIFKIITYLQNTVSIHPISSDLGCDMVPKDELDMDSSNKISFLNKN 587

Query: 61  PFIYLFNLFHNRNRMGKIL 77
           PF  LF+LFH R R G  L
Sbjct: 588 PFFDLFHLFHERKRGGYTL 606

[Close]

BLAST of MS013448 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 119.4 bits (298), Expect = 1.3e-27
Identity = 63/79 (79.75%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 1   SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKN 60
           SFVPSR SENK+IVN FKIITYLQNTVSIHPISS   CDMVPKDE DMDSS+KISFLNKN
Sbjct: 528 SFVPSRRSENKEIVNIFKIITYLQNTVSIHPISSDLGCDMVPKDELDMDSSNKISFLNKN 587

Query: 61  PFIYLFNLFHNRNRMGKIL 77
           PF  LF+LFH R R G  L
Sbjct: 588 PFFDLFHLFHERKRGGYTL 606

The following BLAST results are available for this feature:

BLAST of MS013448 vs. NCBI nr


Match Name	E-value	Identity	Description
AWI73185.1	7.6e-27	83.54	Ycf2 [Melodinus cambodiensis]	[more]
QWK49731.1	1.0e-26	83.54	hypothetical protein RF2 [Ulmus lanceifolia] >QWK49751.1 hypothetical protein RF...	[more]
YP_009733129.1	1.0e-26	83.54	Ycf2 protein [Ulmus elongata] >YP_009733145.1 Ycf2 protein [Ulmus elongata] >QHV...	[more]
QOE56525.1	1.0e-26	83.54	hypothetical protein RF2 [Zelkova serrata] >QOE56543.1 hypothetical protein RF2 ...	[more]
YP_009557903.1	1.0e-26	83.54	Ycf2 [Zelkova serrata] >YP_009557922.1 Ycf2 [Zelkova serrata] >YP_009560336.1 hy...	[more]

BLAST of MS013448 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QD30	1.9e-28	82.28	Protein Ycf2 OS=Cucumis sativus OX=3659 GN=ycf2-A PE=3 SV=1	[more]
Q8S8V2	4.2e-28	81.01	Protein Ycf2 A OS=Atropa belladonna OX=33113 GN=ycf2-A PE=3 SV=1	[more]
Q8S8U1	4.2e-28	81.01	Protein Ycf2 B OS=Atropa belladonna OX=33113 GN=ycf2-B PE=3 SV=1	[more]
Q33BV3	4.2e-28	81.01	Protein Ycf2 OS=Nicotiana tomentosiformis OX=4098 GN=ycf2-A PE=3 SV=1	[more]
Q0ZIV6	4.2e-28	81.01	Protein Ycf2 OS=Vitis vinifera OX=29760 GN=ycf2-A PE=3 SV=1	[more]

BLAST of MS013448 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2S1UDZ5	3.7e-27	83.54	Protein Ycf2 OS=Melodinus cambodiensis OX=2066943 GN=ycf2 PE=3 SV=1	[more]
A0A3G6ILA3	4.8e-27	83.54	Protein Ycf2 OS=Hemiptelea davidii OX=63068 GN=ycf2 PE=3 SV=1	[more]
A0A1L5YDF8	4.8e-27	83.54	Protein Ycf2 OS=Ulmus davidiana OX=1297873 GN=ycf2 PE=3 SV=1	[more]
A0A2S1FWN5	4.8e-27	83.54	Protein Ycf2 OS=Ulmus gaussenii OX=1737301 GN=ycf2 PE=3 SV=1	[more]
A0A1L5YEA1	4.8e-27	83.54	Protein Ycf2 OS=Ulmus pumila OX=198266 GN=ycf2 PE=3 SV=1	[more]

BLAST of MS013448 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00860.1	1.3e-27	79.75	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	1.3e-27	79.75	Chloroplast Ycf2;ATPase, AAA type, core	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008543	Uncharacterised protein family Ycf2	PFAM	PF05695	DUF825	coord: 1..73 e-value: 3.5E-35 score: 120.6
None	No IPR available	PANTHER	PTHR33078:SF69	BNAA06G19310D PROTEIN	coord: 1..75
None	No IPR available	PANTHER	PTHR33078	PROTEIN YCF2-RELATED	coord: 1..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS013448.1	MS013448.1	mRNA